mmdb::math::Vertex::SaveType() mmdb::math::Edge::SaveType()

mmdb::math::Alignment::Score() mmdb::math::Alignment1::Score()

seek mmdb::io::File

mmdb::CoorManager::SeekContacts(PPAtom AIndex, int ilen, int atomNum, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, long group=0) mmdb::CoorManager::SeekContacts(PAtom A, PPAtom AIndex, int ilen, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, long group=0) mmdb::CoorManager::SeekContacts(PPAtom AIndex1, int ilen1, PPAtom AIndex2, int ilen2, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, mat44 *TMatrix=NULL, long group=0, int bricking=0, bool doSqrt=true) mmdb::CoorManager::SeekContacts(PPAtom AIndex1, int ilen1, PPAtom AIndex2, int ilen2, realtype contDist, PContact contact, int &ncontacts, int bricking=0) mmdb::CoorManager::SeekContacts(PPAtom AIndex1, int ilen1, PPAtom *AIndex2, ivector ilen2, int nStructures, realtype dist1, realtype dist2, PPMContact &contact, int bricking=0)

Select

mmdb::SelManager::Select(int selHnd, SELECTION_TYPE sType, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, cpstr Segments, cpstr Charges, realtype occ1, realtype occ2, realtype x0, realtype y0, realtype z0, realtype d0, SELECTION_KEY sKey=SKEY_OR) mmdb::SelManager::Select(int selHnd, SELECTION_TYPE sType, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, SELECTION_KEY sKey=SKEY_OR) mmdb::SelManager::Select(int selHnd, SELECTION_TYPE sType, cpstr CID, SELECTION_KEY sKey) mmdb::SelManager::Select(int selHnd1, SELECTION_TYPE sType, int selHnd2, SELECTION_KEY sKey=SKEY_OR)

SelectAtom

mmdb::SelManager::SelectAtom(int selHnd, PAtom A, SELECTION_KEY selKey=SKEY_OR, bool makeIndex=true) mmdb::SelManager::SelectAtom(PAtom atm, int maskNo, SELECTION_KEY sKey, int &nsel)

SelectAtoms

mmdb::SelManager::SelectAtoms(int selHnd, int iSer1, int iSer2, SELECTION_KEY selKey=SKEY_OR) mmdb::SelManager::SelectAtoms(int selHnd, ivector asn, int nsn, SELECTION_KEY selKey=SKEY_OR) mmdb::SelManager::SelectAtoms(int selHnd, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, cpstr Segments, cpstr Charges, realtype occ1, realtype occ2, realtype x0, realtype y0, realtype z0, realtype d0, SELECTION_KEY selKey=SKEY_OR) mmdb::SelManager::SelectAtoms(int selHnd, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, SELECTION_KEY selKey=SKEY_OR)

SelectChain mmdb::SelManager

SelectCylinder mmdb::SelManager

SelectDomain mmdb::SelManager

SelectionSort mmdb::QuickSort

SelectModel mmdb::SelManager

SelectNeighbours mmdb::SelManager

SelectObject

mmdb::SelManager::SelectObject(SELECTION_TYPE sType, PAtom atm, int maskNo, SELECTION_KEY sKey, int &nsel) mmdb::SelManager::SelectObject(PMask object, int maskNo, SELECTION_KEY sKey, int &nsel)

SelectProperty mmdb::SelManager

SelectResidue mmdb::SelManager

SelectSlab mmdb::SelManager

SelectSphere mmdb::SelManager

SelectUDD

mmdb::SelManager::SelectUDD(int selHnd, SELECTION_TYPE sType, int UDDhandle, int selMin, int selMax, SELECTION_KEY sKey) mmdb::SelManager::SelectUDD(int selHnd, SELECTION_TYPE sType, int UDDhandle, realtype selMin, realtype selMax, SELECTION_KEY sKey) mmdb::SelManager::SelectUDD(int selHnd, SELECTION_TYPE sType, int UDDhandle, cpstr selStr, int cmpRule, SELECTION_KEY sKey)

SelManager

mmdb::SelManager::SelManager() mmdb::SelManager::SelManager(io::RPStream Object)

SelMask mmdb::Mask

selSUDD mmdb

SeqAdv

mmdb::SeqAdv::SeqAdv() mmdb::SeqAdv::SeqAdv(PChain Chain_Owner) mmdb::SeqAdv::SeqAdv(PChain Chain_Owner, cpstr S) mmdb::SeqAdv::SeqAdv(io::RPStream Object)

SeqRes

mmdb::SeqRes::SeqRes() mmdb::SeqRes::SeqRes(io::RPStream Object)

SeqSuperpose mmdb::SeqSuperpose

SeqSuperposeInit mmdb::SeqSuperpose

set_new_float_unibin mmdb

set_old_float_unibin mmdb

SetAffineModel

mmdb::math::Alignment::SetAffineModel() mmdb::math::Alignment1::SetAffineModel()

SetAtomIndex mmdb::Atom

SetAtomName

mmdb::Atom::SetAtomName(int ix, int sN, const AtomName aName, const AltLoc aLoc, const SegID sID, const Element eName) mmdb::Atom::SetAtomName(const AtomName atomName)

SetCategoryName mmdb::mmcif::Category

SetCell

mmdb::Cryst::SetCell() mmdb::Root::SetCell()

SetChain

mmdb::Residue::SetChain() mmdb::ChainContainer::SetChain() mmdb::ContainerChain::SetChain() mmdb::SeqRes::SetChain() mmdb::Chain::SetChain()

SetChainID

mmdb::Residue::SetChainID() mmdb::Chain::SetChainID()

SetCharge

mmdb::Atom::SetCharge(cpstr chrg) mmdb::Atom::SetCharge(realtype chrg)

SetCompressPath mmdb::io

SetCoordinates mmdb::Atom

SetData

mmdb::xml::XMLObject::SetData(cpstr Data) mmdb::xml::XMLObject::SetData(const realtype V, const int length=11) mmdb::xml::XMLObject::SetData(const int iV, const int length=0) mmdb::xml::XMLObject::SetData(const bool bV)

SetDefaultCoorID mmdb::CoorManager

SetEdge

mmdb::math::Edge::SetEdge(int vx1, int vx2, cpstr btype) mmdb::math::Edge::SetEdge(int vx1, int vx2, int btype)

SetEdges mmdb::math::Graph

SetElementName mmdb::Atom

SetEntryID

mmdb::ProModel::SetEntryID() mmdb::Chain::SetEntryID() mmdb::Model::SetEntryID() mmdb::Root::SetEntryID()

SetFlag

mmdb::math::GraphMatch::SetFlag() mmdb::mmcif::Data::SetFlag() mmdb::Root::SetFlag()

SetGraphAllocPortion mmdb::math

SetGroup mmdb::SymOps

SetGroupSymopLib mmdb::SymOps

SetGZIPPath mmdb::io

SetHeader mmdb::Title

SetID mmdb::math::Vertex

SetIgnoreSCALEi mmdb::Root

SetMask mmdb::Mask

SetMaskBit mmdb::Mask

SetMatch mmdb::math::GMatch

SetMaxNofMatches mmdb::math::GraphMatch

SetMinFunction mmdb::math::BFGSMin

SetMMDBManager mmdb::Model

SetModel mmdb::Chain

SetName

mmdb::math::Vertex::SetName() mmdb::math::Graph::SetName()

SetNCSMatrix mmdb::NCSMatrix

setNofSUData mmdb::UDData

SetParent mmdb::xml::XMLObject

SetPath mmdb::AtomPath

SetPrintFunction mmdb::math::BFGSMin

SetPrintWarnings

mmdb::mmcif::Data::SetPrintWarnings() mmdb::mmcif::File::SetPrintWarnings()

SetProperty

mmdb::math::Vertex::SetProperty() mmdb::math::Edge::SetProperty()

SetResID mmdb::Residue

SetResidue mmdb::Atom

SetResName mmdb::Residue

SetScores

mmdb::math::Alignment::SetScores() mmdb::math::Alignment1::SetScores()

SetShortBinary

mmdb::Atom::SetShortBinary() mmdb::Root::SetShortBinary()

SetSpaceGroup

mmdb::Cryst::SetSpaceGroup() mmdb::Root::SetSpaceGroup()

SetStopOnWarning

mmdb::mmcif::Data::SetStopOnWarning() mmdb::mmcif::File::SetStopOnWarning()

SetSuccess mmdb::io::File

SetSyminfoLib

mmdb::Cryst::SetSyminfoLib() mmdb::Root::SetSyminfoLib()

SetSymOp mmdb::SymOp

SetTag mmdb::xml::XMLObject

SetTimeLimit mmdb::math::GraphMatch

SetTMatrix mmdb::SymOp

SetType

mmdb::math::Vertex::SetType() mmdb::math::Edge::SetType()

SetTypeExt mmdb::math::Vertex

SetUserID mmdb::math::Vertex

SetVertex

mmdb::math::Vertex::SetVertex(cpstr chem_elem) mmdb::math::Vertex::SetVertex(int vtype, cpstr vname) mmdb::math::Vertex::SetVertex(int vtype)

SetVertices mmdb::math::Graph

SetWrongFields mmdb::mmcif::Data

Sheet

mmdb::Sheet::Sheet() mmdb::Sheet::Sheet(io::RPStream Object)

Sheets

mmdb::Sheets::Sheets() mmdb::Sheets::Sheets(io::RPStream Object)

short2UniBin mmdb

shortreal2UniBin mmdb

shut mmdb::io::File

Sign mmdb::math

Size mmdb::Biomolecule

Sort

mmdb::mmcif::Category::Sort() mmdb::mmcif::Data::Sort() mmdb::mmcif::File::Sort() mmdb::QuickSort::Sort()

SortChains mmdb::Model

SortContacts mmdb

SortResidues mmdb::Chain

SortTags mmdb::mmcif

Source

mmdb::Source::Source() mmdb::Source::Source(cpstr S) mmdb::Source::Source(io::RPStream Object)

srandom mmdb::math::RandomNumber

SrX2Y2 mmdb::math

SSContainer

mmdb::SSContainer::SSContainer() mmdb::SSContainer::SSContainer(io::RPStream Object)

StandardPDBOut mmdb::Atom

Stop mmdb::math::BFGSMin

Strand

mmdb::Strand::Strand() mmdb::Strand::Strand(io::RPStream Object)

strcat_des mmdb

strcpy_cs mmdb

strcpy_css mmdb

strcpy_des mmdb

strcpy_n mmdb

strcpy_n0 mmdb

strcpy_n1 mmdb

strcpy_ncs mmdb

strcpy_ncss mmdb

strcpy_nr mmdb

strcpy_ns mmdb

Stream

mmdb::io::Stream::Stream() mmdb::io::Stream::Stream(RPStream)

StreamRead_ mmdb::io

StreamWrite_ mmdb::io

strlen_des mmdb

Struct

mmdb::mmcif::Struct::Struct() mmdb::mmcif::Struct::Struct(cpstr N) mmdb::mmcif::Struct::Struct(io::RPStream Object)

Success mmdb::io::File

Superpose mmdb::SeqSuperpose

SuperposeAtoms mmdb

Supersede

mmdb::Supersede::Supersede() mmdb::Supersede::Supersede(cpstr S) mmdb::Supersede::Supersede(io::RPStream Object)

SVD mmdb::math

Swap

mmdb::Contact::Swap() mmdb::QuickSort::Swap()

SwapModels mmdb::CoorManager

SwitchModel

mmdb::Root::SwitchModel(cpstr L) mmdb::Root::SwitchModel(int nM)

SymOp

mmdb::SymOp::SymOp() mmdb::SymOp::SymOp(io::RPStream Object)

SymOps

mmdb::SymOps::SymOps() mmdb::SymOps::SymOps(io::RPStream Object)