s

mmdb::Cryst::s() mmdb::Root::S()

s1 mmdb::Link

s2 mmdb::Link

SA mmdb::Root

SaveType

mmdb::math::Vertex::SaveType() mmdb::math::Edge::SaveType()

SB mmdb::Root

SC mmdb::Root

Score

mmdb::math::Alignment::Score() mmdb::math::Alignment1::Score()

SCUTKEY mmdb

SCUTKEY_BEGEND mmdb

SCUTKEY_BEGIN mmdb

SCUTKEY_END mmdb

seek mmdb::io::File

SeekContacts

mmdb::CoorManager::SeekContacts(PPAtom AIndex, int ilen, int atomNum, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, long group=0) mmdb::CoorManager::SeekContacts(PAtom A, PPAtom AIndex, int ilen, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, long group=0) mmdb::CoorManager::SeekContacts(PPAtom AIndex1, int ilen1, PPAtom AIndex2, int ilen2, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, mat44 *TMatrix=NULL, long group=0, int bricking=0, bool doSqrt=true) mmdb::CoorManager::SeekContacts(PPAtom AIndex1, int ilen1, PPAtom AIndex2, int ilen2, realtype contDist, PContact contact, int &ncontacts, int bricking=0) mmdb::CoorManager::SeekContacts(PPAtom AIndex1, int ilen1, PPAtom *AIndex2, ivector ilen2, int nStructures, realtype dist1, realtype dist2, PPMContact &contact, int bricking=0)

segID

mmdb::Atom::segID() mmdb::SegID()

Select

mmdb::SelManager::Select(int selHnd, SELECTION_TYPE sType, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, cpstr Segments, cpstr Charges, realtype occ1, realtype occ2, realtype x0, realtype y0, realtype z0, realtype d0, SELECTION_KEY sKey=SKEY_OR) mmdb::SelManager::Select(int selHnd, SELECTION_TYPE sType, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, SELECTION_KEY sKey=SKEY_OR) mmdb::SelManager::Select(int selHnd, SELECTION_TYPE sType, cpstr CID, SELECTION_KEY sKey) mmdb::SelManager::Select(int selHnd1, SELECTION_TYPE sType, int selHnd2, SELECTION_KEY sKey=SKEY_OR)

SelectAtom

mmdb::SelManager::SelectAtom(int selHnd, PAtom A, SELECTION_KEY selKey=SKEY_OR, bool makeIndex=true) mmdb::SelManager::SelectAtom(PAtom atm, int maskNo, SELECTION_KEY sKey, int &nsel)

SelectAtoms

mmdb::SelManager::SelectAtoms(int selHnd, int iSer1, int iSer2, SELECTION_KEY selKey=SKEY_OR) mmdb::SelManager::SelectAtoms(int selHnd, ivector asn, int nsn, SELECTION_KEY selKey=SKEY_OR) mmdb::SelManager::SelectAtoms(int selHnd, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, cpstr Segments, cpstr Charges, realtype occ1, realtype occ2, realtype x0, realtype y0, realtype z0, realtype d0, SELECTION_KEY selKey=SKEY_OR) mmdb::SelManager::SelectAtoms(int selHnd, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, SELECTION_KEY selKey=SKEY_OR)

SelectChain mmdb::SelManager

SelectCylinder mmdb::SelManager

SelectDomain mmdb::SelManager

selection mmdb::SelManager

SELECTION_KEY mmdb

SELECTION_PROPERTY mmdb

SELECTION_TYPE mmdb

SelectionSort mmdb::QuickSort

SelectModel mmdb::SelManager

SelectNeighbours mmdb::SelManager

SelectObject

mmdb::SelManager::SelectObject(SELECTION_TYPE sType, PAtom atm, int maskNo, SELECTION_KEY sKey, int &nsel) mmdb::SelManager::SelectObject(PMask object, int maskNo, SELECTION_KEY sKey, int &nsel)

SelectProperty mmdb::SelManager

SelectResidue mmdb::SelManager

SelectSlab mmdb::SelManager

SelectSphere mmdb::SelManager

SelectUDD

mmdb::SelManager::SelectUDD(int selHnd, SELECTION_TYPE sType, int UDDhandle, int selMin, int selMax, SELECTION_KEY sKey) mmdb::SelManager::SelectUDD(int selHnd, SELECTION_TYPE sType, int UDDhandle, realtype selMin, realtype selMax, SELECTION_KEY sKey) mmdb::SelManager::SelectUDD(int selHnd, SELECTION_TYPE sType, int UDDhandle, cpstr selStr, int cmpRule, SELECTION_KEY sKey)

SelManager

mmdb::Atom::SelManager() mmdb::Chain::SelManager() mmdb::Model::SelManager() mmdb::UDData::SelManager() mmdb::SelManager::SelManager() mmdb::SelManager::SelManager(io::RPStream Object)

SelManager mmdb

SelMask mmdb::Mask

SELPROP_Aminoacid mmdb

SELPROP_ModRes mmdb

SELPROP_Nucleotide mmdb

SELPROP_Solvent mmdb

SELPROP_Sugar mmdb

selSortLimit mmdb::QuickSort

selSUDD mmdb

selType mmdb::SelManager

sense mmdb::Strand

SEq

mmdb::math::Alignment::SEq() mmdb::math::Alignment1::SEq()

SeqAdv mmdb

seqAdv

mmdb::Chain::seqAdv() mmdb::Chain::SeqAdv() mmdb::SeqAdv::SeqAdv() mmdb::SeqAdv::SeqAdv(PChain Chain_Owner) mmdb::SeqAdv::SeqAdv(PChain Chain_Owner, cpstr S) mmdb::SeqAdv::SeqAdv(io::RPStream Object)

seqBeg mmdb::DBReference

seqEnd mmdb::DBReference

seqId mmdb::SeqSuperpose

seqNum

mmdb::Residue::seqNum() mmdb::SeqAdv::seqNum() mmdb::ModRes::seqNum() mmdb::HetRec::seqNum() mmdb::AtomPath::seqNum()

seqNum1

mmdb::Link::seqNum1() mmdb::LinkR::seqNum1() mmdb::CisPep::seqNum1()

seqNum2

mmdb::Link::seqNum2() mmdb::LinkR::seqNum2() mmdb::CisPep::seqNum2()

SeqRes

mmdb::Chain::SeqRes() mmdb::SeqRes::SeqRes() mmdb::SeqRes::SeqRes(io::RPStream Object) mmdb::Chain::seqRes()

SeqRes mmdb

SEQSP_IterLimit mmdb

SEQSP_Ok mmdb

SEQSP_RC mmdb

SEQSP_SeqThreshold mmdb

SeqSuperpose mmdb

SeqSuperpose mmdb::SeqSuperpose

SeqSuperposeInit mmdb::SeqSuperpose

serNum

mmdb::Atom::serNum() mmdb::SeqRes::serNum() mmdb::NCSMatrix::serNum() mmdb::TVect::serNum() mmdb::Helix::serNum() mmdb::Turn::serNum() mmdb::CisPep::serNum() mmdb::Model::serNum()

set_new_float_unibin mmdb

set_old_float_unibin mmdb

SetAffineModel

mmdb::math::Alignment::SetAffineModel() mmdb::math::Alignment1::SetAffineModel()

SetAtomIndex mmdb::Atom

SetAtomName

mmdb::Atom::SetAtomName(int ix, int sN, const AtomName aName, const AltLoc aLoc, const SegID sID, const Element eName) mmdb::Atom::SetAtomName(const AtomName atomName)

SetCategoryName mmdb::mmcif::Category

SetCell

mmdb::Cryst::SetCell() mmdb::Root::SetCell()

SetChain

mmdb::Residue::SetChain() mmdb::ChainContainer::SetChain() mmdb::ContainerChain::SetChain() mmdb::SeqRes::SetChain() mmdb::Chain::SetChain()

SetChainID

mmdb::Residue::SetChainID() mmdb::Chain::SetChainID()

SetCharge

mmdb::Atom::SetCharge(cpstr chrg) mmdb::Atom::SetCharge(realtype chrg)

SetCompressPath mmdb::io

SetCoordinates mmdb::Atom

SetData

mmdb::xml::XMLObject::SetData(cpstr Data) mmdb::xml::XMLObject::SetData(const realtype V, const int length=11) mmdb::xml::XMLObject::SetData(const int iV, const int length=0) mmdb::xml::XMLObject::SetData(const bool bV)

SetDefaultCoorID mmdb::CoorManager

SetEdge

mmdb::math::Edge::SetEdge(int vx1, int vx2, cpstr btype) mmdb::math::Edge::SetEdge(int vx1, int vx2, int btype)

SetEdges mmdb::math::Graph

SetElementName mmdb::Atom

SetEntryID

mmdb::ProModel::SetEntryID() mmdb::Chain::SetEntryID() mmdb::Model::SetEntryID() mmdb::Root::SetEntryID()

SetFlag

mmdb::math::GraphMatch::SetFlag() mmdb::mmcif::Data::SetFlag() mmdb::Root::SetFlag()

SetGraphAllocPortion mmdb::math

SetGroup mmdb::SymOps

SetGroupSymopLib mmdb::SymOps

SetGZIPPath mmdb::io

SetHeader mmdb::Title

SetID mmdb::math::Vertex

SetIgnoreSCALEi mmdb::Root

SetMask mmdb::Mask

SetMaskBit mmdb::Mask

SetMatch mmdb::math::GMatch

SetMaxNofMatches mmdb::math::GraphMatch

SetMinFunction mmdb::math::BFGSMin

SetMMDBManager mmdb::Model

SetModel mmdb::Chain

SetName

mmdb::math::Vertex::SetName() mmdb::math::Graph::SetName()

SetNCSMatrix mmdb::NCSMatrix

setNofSUData mmdb::UDData

SetParent mmdb::xml::XMLObject

SetPath mmdb::AtomPath

SetPrintFunction mmdb::math::BFGSMin

SetPrintWarnings

mmdb::mmcif::Data::SetPrintWarnings() mmdb::mmcif::File::SetPrintWarnings()

SetProperty

mmdb::math::Vertex::SetProperty() mmdb::math::Edge::SetProperty()

SetResID mmdb::Residue

SetResidue mmdb::Atom

SetResName mmdb::Residue

SetScores

mmdb::math::Alignment::SetScores() mmdb::math::Alignment1::SetScores()

SetShortBinary

mmdb::Atom::SetShortBinary() mmdb::Root::SetShortBinary()

SetSpaceGroup

mmdb::Cryst::SetSpaceGroup() mmdb::Root::SetSpaceGroup()

SetStopOnWarning

mmdb::mmcif::Data::SetStopOnWarning() mmdb::mmcif::File::SetStopOnWarning()

SetSuccess mmdb::io::File

SetSyminfoLib

mmdb::Cryst::SetSyminfoLib() mmdb::Root::SetSyminfoLib()

SetSymOp mmdb::SymOp

SetTag mmdb::xml::XMLObject

SetTimeLimit mmdb::math::GraphMatch

SetTMatrix mmdb::SymOp

SetType

mmdb::math::Vertex::SetType() mmdb::math::Edge::SetType()

SetTypeExt mmdb::math::Vertex

SetUserID mmdb::math::Vertex

SetVertex

mmdb::math::Vertex::SetVertex(cpstr chem_elem) mmdb::math::Vertex::SetVertex(int vtype, cpstr vname) mmdb::math::Vertex::SetVertex(int vtype)

SetVertices mmdb::math::Graph

SetWrongFields mmdb::mmcif::Data

Sheet mmdb

sheet

mmdb::Sheets::sheet() mmdb::Sheet::Sheet() mmdb::Sheet::Sheet(io::RPStream Object)

sheetID

mmdb::Strand::sheetID() mmdb::Sheet::sheetID() mmdb::SheetID()

Sheets mmdb

sheets

mmdb::Model::sheets() mmdb::Sheets::Sheets() mmdb::Sheets::Sheets(io::RPStream Object)

short2UniBin mmdb

short_int mmdb

short_mono mmdb

shortreal mmdb

shortreal2UniBin mmdb

shortrealUniBin mmdb

shortUniBin mmdb

shut mmdb::io::File

sIdCode mmdb::Supersede

Sign mmdb::math

sigOcc mmdb::Atom

sigTemp mmdb::Atom

sigX mmdb::Atom

sigY mmdb::Atom

sigZ mmdb::Atom

Size mmdb::Biomolecule

SKEY_AND mmdb

SKEY_CLR mmdb

SKEY_NEW mmdb

SKEY_OR mmdb

SKEY_XAND mmdb

SKEY_XOR mmdb

SLen

mmdb::math::Alignment::SLen() mmdb::math::Alignment1::SLen()

SN mmdb::math::BFGSMin

SNEq

mmdb::math::Alignment::SNEq() mmdb::math::Alignment1::SNEq()

Sort

mmdb::mmcif::Category::Sort() mmdb::mmcif::Data::Sort() mmdb::mmcif::File::Sort() mmdb::QuickSort::Sort()

SORT_CHAIN_ChainID_Asc mmdb

SORT_CHAIN_ChainID_Desc mmdb

SORT_CHAIN_DIR mmdb

SortChains mmdb::Model

SortContacts mmdb

SortResidues mmdb::Chain

SortTags mmdb::mmcif

source

mmdb::Title::source() mmdb::Source::Source() mmdb::Source::Source(cpstr S) mmdb::Source::Source(io::RPStream Object)

Source mmdb

Space

mmdb::math::Alignment::Space() mmdb::math::Alignment1::Space()

spaceGroup mmdb::Cryst

spaceGroupFix mmdb::Cryst

spaceWeight mmdb::math::AlignParams

special mmdb

SpGroup mmdb::SymOps

SPOSEAT_NoAtoms mmdb

SPOSEAT_Ok mmdb

SPOSEAT_RC mmdb

SPOSEAT_SVD_Fail mmdb

sprsdeDate mmdb::Supersede

SqrtEps mmdb::math::BFGSMin

SqrtEtha mmdb::math::BFGSMin

srandom mmdb::math::RandomNumber

SrX2Y2 mmdb::math

SSContainer mmdb

SSContainer

mmdb::SSContainer::SSContainer() mmdb::SSContainer::SSContainer(io::RPStream Object)

SSE mmdb::Residue

SSE_3Turn mmdb

SSE_4Turn mmdb

SSE_5Turn mmdb

SSE_Bulge mmdb

SSE_FLAG mmdb

SSE_Helix mmdb

SSE_None mmdb

SSE_RC mmdb

SSE_Strand mmdb

SSERC_noAminoacids mmdb

SSERC_noResidues mmdb

SSERC_noSSE mmdb

SSERC_Ok mmdb

StandardPDBOut mmdb::Atom

stdRes mmdb::ModRes

StdSolventName mmdb

StepSize mmdb::math::BFGSMin

Stop

mmdb::math::GraphMatch::Stop() mmdb::math::BFGSMin::Stop()

stopOnMaxNMathches mmdb::math::GraphMatch

StopOnWarning mmdb::mmcif::File

StpEps mmdb::math::BFGSMin

strand

mmdb::Sheet::strand() mmdb::Strand::Strand() mmdb::Strand::Strand(io::RPStream Object)

Strand mmdb

StrandID mmdb

strandNo mmdb::Strand

strcat_des mmdb

strchr mmdb_mattype.h

strcpy_cs mmdb

strcpy_css mmdb

strcpy_des mmdb

strcpy_n mmdb

strcpy_n0 mmdb

strcpy_n1 mmdb

strcpy_ncs mmdb

strcpy_ncss mmdb

strcpy_nr mmdb

strcpy_ns mmdb

Stream mmdb::io

Stream

mmdb::io::Stream::Stream() mmdb::io::Stream::Stream(RPStream)

StreamRead_ mmdb::io

StreamWrite_ mmdb::io

strlen_des mmdb

strrchr mmdb_mattype.h

Struct mmdb::mmcif

Struct

mmdb::mmcif::Struct::Struct() mmdb::mmcif::Struct::Struct(cpstr N) mmdb::mmcif::Struct::Struct(io::RPStream Object)

STYPE_ATOM mmdb

STYPE_CHAIN mmdb

STYPE_INVALID mmdb

STYPE_MODEL mmdb

STYPE_RESIDUE mmdb

STYPE_UNDEFINED mmdb

su11 mmdb::Atom

su12 mmdb::Atom

su13 mmdb::Atom

su22 mmdb::Atom

su23 mmdb::Atom

su33 mmdb::Atom

Success mmdb::io::File

SUData mmdb::UDData

SUDRegister mmdb::UDRegister

Superpose mmdb::SeqSuperpose

SuperposeAtoms mmdb

Supersede mmdb

supersede

mmdb::Title::supersede() mmdb::Supersede::Supersede() mmdb::Supersede::Supersede(cpstr S) mmdb::Supersede::Supersede(io::RPStream Object)

SVD mmdb::math

swap

mmdb::math::GraphMatch::swap() mmdb::Contact::Swap() mmdb::QuickSort::Swap()

SwapModels mmdb::CoorManager

SwitchModel

mmdb::Root::SwitchModel(cpstr L) mmdb::Root::SwitchModel(int nM)

Sx mmdb::math::BFGSMin

SymGroup mmdb

syminfo_file mmdb_symop.cpp

syminfo_lib mmdb::Cryst

SymOp mmdb

symOp

mmdb::SymOps::symOp() mmdb::SymOp::SymOp() mmdb::SymOp::SymOp(io::RPStream Object)

symop_file mmdb_symop.cpp

SYMOP_NoLibFile mmdb

SYMOP_NoSymOps mmdb

SYMOP_NotAnOperation mmdb

SYMOP_Ok mmdb

SYMOP_RC mmdb

SYMOP_UnknownSpaceGroup mmdb

SYMOP_WrongSyntax mmdb

SYMOP_ZeroDenominator mmdb

SymOps

mmdb::SymOps::SymOps() mmdb::SymOps::SymOps(io::RPStream Object) mmdb::Cryst::symOps()

SymOps mmdb

SYMREL_MASK mmdb::math

SYSKEY mmdb::io

syskey_all mmdb::io

syskey_unix mmdb::io

syskey_win mmdb::io