2005-05-24  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* coot-utils.scm (graphics-comma-key-pressed-hook): Added empty hook

2005-03-20  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* gap.scm (fit-gap): add valid molecule protection.

2005-03-18  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* hello.scm: (first-non-trivial-name): created for Indian names
	such as "D. K. Simanshu"

2005-03-09  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* coot-utils.scm (goosh-command-with-file-input): also pass args.

	* raster3d.scm: new usage of goosh-command-with-file-input passing
	also -png for old rasters [Nick Keep].

2005-03-02  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* hello.scm Add Japanese names.

	* fitting.scm (fit-protein): add
	set-refinement-immediate-replacement after refinement.

2005-02-23  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* group-settings.scm: turn off display lists if uname is Linux.

2005-02-20  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* coot-utils.scm (move-molecule-to-screen-centre): created.

2005-02-19  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* coot-utils.scm: US English spelling of rotation-center.

2005-01-17  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* mutate.scm (mutate-chain): added
	update-go-to-atom-window-on-changed-mol usage

	(mutate-residue-range): Added
	update-go-to-atom-window-on-changed-mol.

2005-01-12  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* mutate.scm (mutate-residue-range): Added no backup wrapper.
	Perhaps I should create a (with-no-backup imol func)
	environment...
	(mutate-residue-range): graphics-draw after we have finished.

2005-01-11  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* mutate.scm (mutate-chain): Use mutate-single-residue-by-seqno
	not the undefined mutate-single-residue.

2005-01-09  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* raster3d.scm (render-image): remove the #t from the
	goosh-command-with-file-input

2004-12-30  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* coot-lsq.scm: Created.  Added to Makefile.am and coot.scm.

2004-11-16  Paul Emsley  <emsley@localhost>

	* refmac.scm (run-refmac-by-filename): loggraph now works on the
	refmac log file.

2004-11-04  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* libcheck.scm (monomer-molecule-from-3-let-code): renamed
	post-refmac-pdb-file-name to start with "monomer" not the
	confusing "post-refmac".

2004-10-19  Paul Emsley  <emsley@localhost>

	* coot-utils.scm (multi-read-pdb): apply the full path to the
	result of the glob.
2004-10-16  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* refmac.scm (run-refmac-by-filename): added potential double
	definition of WEIGHT exclusion.

2004-10-15  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* coot-utils.scm (list-of-strings?): fix null? args problem
	[oops].

2004-09-15  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* refmac.scm (refmac-extra-params): Added.  Used by
	run-refmac-by-filename.

2004-08-18  Paul Emsley  <paule@chem.gla.ac.uk>

	* coot-utils.scm: (multi-read-pdb) and (read-pdb-all) created.

2004-08-04  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* hello.scm Use localtime, not gmtime.

2004-07-19  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* coot-utils.scm (goosh-command): Add command-in-path? protection
	[don't crash when trying to run "Get Monomer" libcheck without
	having setup CCP4].

	* libcheck.scm (monomer-molecule-from-3-let-code): libstatus can
	be #f, so add number? checking before = test.

2004-07-17  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* refmac.scm (run-refmac-by-filename): wrap the
	handle-read-draw-molecule of the new file with non-recentring
	code.

2004-07-13  Paul Emsley  <paulemsley@ysbl.york.ac.uk>

	* raster3d.scm: (render-image): oops.  I had left in "notrender",
	rather than "render".  Fixed.

2004-06-08  Paul Emsley  <emsley@localhost>

	* coot-utils.scm (goosh-command-with-file-input): Added which cmd
	protection.

2004-05-23  Paul Emsley  <emsley@localhost>

	* raster3d.scm (render-image): Created.

2003-10-18  Paul Emsley  <emsley@localhost>

	* coot-utils.scm: Added function (set-virtual-trackball-type).

2003-10-17  Paul Emsley  <emsley@localhost>

	* refmac.scm: pulled out refmac-exe so that it can be
	user-defined.

