- s -

• SaveCoordinates() : ssm::MAStruct
• SelectCalphas() : ssm::Graph , ssm::SuperposeData , ssm::Superpose , ssm::MultAlign
• Set() : ssm::MAStruct , ssm::PAMatch
• SetAllowMC() : ssm::Superpose
• SetBestMatch() : ssm::GraphMatch , ssm::PAMatches
• SetCaSelections() : ssm::Superpose
• SetEdge() : ssm::Edge
• SetFlags() : ssm::GraphMatch
• SetGraphName() : ssm::Graph
• SetID() : ssm::Vertex
• SetIterationLimits() : ssm::Superpose
• SetMatch() : ssm::Match
• SetMatchBufferLength() : ssm::GraphMatch
• setProgressFunction() : ssm::MultAlign
• SetSSERange() : ssm::MSSEOutput
• SetUniqueMatch() : ssm::GraphMatch
• SetVertex() : ssm::Vertex
• Sort() : ssm::SortDist
• SortDist() : ssm::SortDist
• SortStructures() : ssm::MultAlign
• Superpose() : ssm::Graph , ssm::Superpose
• SuperposeCalphas() : ssm::Superpose
• SuperposeSSGraphs() : ssm::Superpose
• Swap() : ssm::SortDist , ssm::Match