- c -

• CalcCombinations() : ssm::Graph
• CalcConsensus() : ssm::MultAlign
• CalcConsensusScores() : ssm::MultAlign
• CalcCorrelationMatrix() : ssm::MAStruct
• CalcDistance() : ssm::Superpose
• CalcGeometry() : ssm::Vertex
• CalcNCombs() : ssm::Superpose
• CalcNGaps() : ssm::Superpose
• CalcQScore() : ssm::Superpose
• CalcRMSD() : ssm::MultAlign
• CalcRotation() : ssm::MultAlign
• CalcScore() : ssm::SSEDesc
• CalcTranslation() : ssm::MAStruct
• CalculateTMatrix() : ssm::Superpose
• CalcVertexOrder() : ssm::Graph
• calcVTypes() : ssm::Graph
• CheckConnectivity() : ssm::GraphMatch , ssm::Edge
• CheckEdgeConnectivity() : ssm::Graph
• ChooseFirstRotation() : ssm::Superpose
• CleanShortSections() : ssm::Superpose
• CollectMatch() : ssm::GraphMatch
• Compare() : ssm::SortDist , ssm::Vertex , ssm::Edge
• CompareEdges() : ssm::Graph
• CompatibleSSE() : ssm::SpAtom
• Copy() : ssm::SectionDist , ssm::SSEDesc , ssm::MAOutput , ssm::Vertex , ssm::MSSEOutput , ssm::Graph
• CorrespondContacts() : ssm::Superpose , ssm::MultAlign
• CorrespondSSEs() : ssm::Superpose
• Cosine() : ssm::SSEDesc
• customFree() : ssm::XAlignText
• customInit() : ssm::XAlign , ssm::XAlignText