Here is a list of all class members with links to the classes they belong to:

- s -

• S : ssm::MultAlign
• SaveCoordinates() : ssm::MAStruct
• score : ssm::SSEDesc
• sd : ssm::SortDist
• SD : ssm::MAStruct
• sdata : ssm::Superpose
• SDist : ssm::Superpose
• SDistAlloc : ssm::Superpose
• SelectCalphas() : ssm::Graph , ssm::MultAlign , ssm::SuperposeData , ssm::Superpose
• selHnd : ssm::SuperposeData
• selHndCa1 : ssm::Align
• selHndCa2 : ssm::Align
• selHndIncl : ssm::SuperposeData
• selInclHnd1 : ssm::Superpose
• selInclHnd2 : ssm::Superpose
• selstring : ssm::SuperposeData
• selString1 : ssm::Superpose
• selString2 : ssm::Superpose
• seqIdent : ssm::Superpose
• seqIdentity : ssm::Align
• seqNum : ssm::MAOutput
• seqNum1 : ssm::XTAlign , ssm::MSSEOutput
• seqNum2 : ssm::XTAlign , ssm::MSSEOutput
• serNum : ssm::Vertex
• Set() : ssm::MAStruct , ssm::PAMatch
• SetAllowMC() : ssm::Superpose
• SetBestMatch() : ssm::GraphMatch , ssm::PAMatches
• SetCaSelections() : ssm::Superpose
• SetEdge() : ssm::Edge
• SetFlags() : ssm::GraphMatch
• SetGraphName() : ssm::Graph
• SetID() : ssm::Vertex
• SetIterationLimits() : ssm::Superpose
• SetMatch() : ssm::Match
• SetMatchBufferLength() : ssm::GraphMatch
• setProgressFunction() : ssm::MultAlign
• SetSSERange() : ssm::MSSEOutput
• SetUniqueMatch() : ssm::GraphMatch
• SetVertex() : ssm::Vertex
• sg1 : ssm::XAlign
• sg2 : ssm::XAlign
• shortSect1 : ssm::Superpose
• shortSect2 : ssm::Superpose
• simindex : ssm::XTAlign
• sNo : ssm::MAStruct
• Sort() : ssm::SortDist
• SortDist() : ssm::SortDist
• sortDist : ssm::Superpose
• SortStructures() : ssm::MultAlign
• sse : ssm::SpAtom
• sse1 : ssm::SectionDist
• sse2 : ssm::SectionDist
• SSED : ssm::SuperposeData
• SSED1 : ssm::Superpose
• SSED2 : ssm::Superpose
• sseGray : ssm::Superpose
• sseType : ssm::MAOutput , ssm::MSSEOutput
• sseType1 : ssm::XTAlign
• sseType2 : ssm::XTAlign
• SSEweight : ssm::Superpose
• Stop : ssm::GraphMatch
• strandNo : ssm::Vertex
• Superpose() : ssm::Superpose
• superpose : ssm::Align , ssm::MultAlign
• Superpose() : ssm::Graph
• SuperposeCalphas() : ssm::Superpose
• SuperposeSSGraphs() : ssm::Superpose
• swap : ssm::GraphMatch
• Swap() : ssm::SortDist , ssm::Match