Here is a list of all class members with links to the classes they belong to:

- c -

• c : ssm::SpAtom
• c0 : ssm::SpAtom
• c1 : ssm::GraphMatch
• c2 : ssm::GraphMatch
• Ca1 : ssm::Align
• Ca2 : ssm::Align
• CalcCombinations() : ssm::Graph
• CalcConsensus() : ssm::MultAlign
• CalcConsensusScores() : ssm::MultAlign
• CalcCorrelationMatrix() : ssm::MAStruct
• CalcDistance() : ssm::Superpose
• CalcGeometry() : ssm::Vertex
• CalcNCombs() : ssm::Superpose
• CalcNGaps() : ssm::Superpose
• CalcQScore() : ssm::Superpose
• CalcRMSD() : ssm::MultAlign
• CalcRotation() : ssm::MultAlign
• CalcScore() : ssm::SSEDesc
• CalcTranslation() : ssm::MAStruct
• CalculateTMatrix() : ssm::Superpose
• CalcVertexOrder() : ssm::Graph
• calcVTypes() : ssm::Graph
• Calpha : ssm::SuperposeData
• Calpha1 : ssm::Superpose
• Calpha2 : ssm::Superpose
• cax0 : ssm::Superpose
• cay0 : ssm::Superpose
• caz0 : ssm::Superpose
• chainID : ssm::Vertex
• CheckConnectivity() : ssm::GraphMatch , ssm::Edge
• CheckEdgeConnectivity() : ssm::Graph
• chID : ssm::MSSEOutput , ssm::MAOutput , ssm::SpAtom
• chID1 : ssm::XTAlign
• chID2 : ssm::XTAlign
• ChooseFirstRotation() : ssm::Superpose
• classID : ssm::SSEDesc , ssm::Vertex
• CleanShortSections() : ssm::Superpose
• cnCheck : ssm::Align
• CollectMatch() : ssm::GraphMatch
• Compare() : ssm::SortDist , ssm::Vertex , ssm::Edge
• CompareEdges() : ssm::Graph
• CompatibleSSE() : ssm::SpAtom
• connectivity : ssm::MultAlign
• Copy() : ssm::SectionDist , ssm::MSSEOutput , ssm::Graph , ssm::MAOutput , ssm::SSEDesc , ssm::Vertex
• copyF1 : ssm::Superpose
• copyF2 : ssm::Superpose
• copyFlen : ssm::Superpose
• core_e1 : ssm::SectionDist
• core_e2 : ssm::SectionDist
• core_pos1 : ssm::SectionDist
• core_pos2 : ssm::SectionDist
• CorrespondContacts() : ssm::Superpose , ssm::MultAlign
• CorrespondSSEs() : ssm::Superpose
• cosine : ssm::SectionDist
• Cosine() : ssm::SSEDesc
• customFree() : ssm::XAlignText
• customInit() : ssm::XAlignText , ssm::XAlign
• cx : ssm::MAStruct
• cy : ssm::MAStruct
• cz : ssm::MAStruct