ssm::XAlign Member List

This is the complete list of members for ssm::XAlign, including all inherited members.
a1ssm::XAlign [protected]
a2ssm::XAlign [protected]
algnLenssm::XAlign [protected]
align(PGraph g1, mmdb::PPAtom Calpha1, mmdb::ivector Ca1, int nat1, PGraph g2, mmdb::PPAtom Calpha2, mmdb::ivector Ca2, int nat2, mmdb::rvector dist1, int &nr)ssm::XAlign
alignXBlocks(RXBlock B1, RXBlock B2, int &nr)ssm::XAlign [protected]
alpha1ssm::XAlign [protected]
alpha2ssm::XAlign [protected]
customInit()ssm::XAlign [protected, virtual]
d1ssm::XAlign [protected]
FreeMemory()ssm::XAlign [protected, virtual]
GetNCols2()ssm::XAlign [inline]
makeRow(mmdb::PAtom A1, int sseType1, mmdb::PAtom A2, int sseType2, mmdb::realtype dist, int rowNo, int icol, bool aligned)ssm::XAlign [protected, virtual]
makeXBlocks(mmdb::ivector Ca, int nat, RPXBlock xBlock, int &nBlocks)ssm::XAlign [protected]
maxdistssm::XAlign [protected]
na1ssm::XAlign [protected]
na2ssm::XAlign [protected]
nBlock1ssm::XAlign [protected]
nBlock2ssm::XAlign [protected]
nCols1ssm::XAlign [protected]
nCols2ssm::XAlign [protected]
nRowsssm::XAlign [protected]
sg1ssm::XAlign [protected]
sg2ssm::XAlign [protected]
XAlign()ssm::XAlign
XBlock1ssm::XAlign [protected]
XBlock2ssm::XAlign [protected]
~XAlign()ssm::XAlign [virtual]
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