ssm::Superpose Member List

This is the complete list of members for ssm::Superpose, including all inherited members.
_superpose(PGraph G1, PGraph G2, int &rc)ssm::Superpose [protected]
Assm::Superpose [protected]
a1ssm::Superpose [protected]
a2ssm::Superpose [protected]
ADssm::Superpose [protected]
AlignSSEs(RSectionDist D, int unmap)ssm::Superpose [protected]
allowMCssm::Superpose [protected]
CalcDistance(int SSE1, int SSSE2, RSectionDist D)ssm::Superpose [protected]
CalcNCombs(PGraph G, PSSEDesc SSED, int nSSEs, PSpAtom a, int nres)ssm::Superpose [protected]
CalcNGaps(PSpAtom a, int nres, int &Ng, int &Nm)ssm::Superpose [protected]
CalcQScore(RSSEDesc SSE1)ssm::Superpose [protected]
CalculateTMatrix()ssm::Superpose [protected]
Calpha1ssm::Superpose [protected]
Calpha2ssm::Superpose [protected]
cax0ssm::Superpose [protected]
cay0ssm::Superpose [protected]
caz0ssm::Superpose [protected]
ChooseFirstRotation(int rotSSE1, int rotSSE2)ssm::Superpose [protected]
CleanShortSections(PSpAtom at1, int nat1, PSpAtom at2)ssm::Superpose [protected]
copyF1ssm::Superpose [protected]
copyF2ssm::Superpose [protected]
copyFlenssm::Superpose [protected]
CorrespondContacts(mmdb::PManager M1, mmdb::realtype rmsd_est)ssm::Superpose [protected]
CorrespondSSEs(mmdb::ivector F1, int nF1, mmdb::ivector F2, int nF2, mmdb::realtype rmsd_est)ssm::Superpose [protected]
driverIDssm::Superpose [protected]
ExpandContact(mmdb::RContact c, int &ip, int &im, mmdb::realtype maxDist2)ssm::Superpose [protected]
FH1ssm::Superpose [protected]
FH2ssm::Superpose [protected]
FirstGuess(mmdb::ivector F1, mmdb::ivector F2, int mlen)ssm::Superpose [protected]
FreeMemory()ssm::Superpose [protected]
FS1ssm::Superpose [protected]
FS2ssm::Superpose [protected]
GetCalphaQ()ssm::Superpose [inline]
GetCalphas1(mmdb::PPAtom &Calpha, int &numRes)ssm::Superpose
GetCalphas2(mmdb::PPAtom &Calpha, int &numRes)ssm::Superpose
GetNAlign()ssm::Superpose
GetRMSD()ssm::Superpose
GetSSEDesc1(RPSSEDesc sseDesc, int &numSSEs)ssm::Superpose
GetSSEDesc1()ssm::Superpose
GetSSEDesc2(RPSSEDesc sseDesc, int &numSSEs)ssm::Superpose
GetSSEDesc2()ssm::Superpose
GetSSESpseCenters(RSSEDesc Q1, RSSEDesc Q2, RSSEDesc T1, RSSEDesc T2, mmdb::realtype &qc1, mmdb::realtype &qc2, mmdb::realtype &tc1, mmdb::realtype &tc2)ssm::Superpose [protected]
GetSuperposedSSEs(mmdb::ivector v1, mmdb::ivector v2, int &nSupSSEs)ssm::Superpose
GetSuperposition(mmdb::ivector &Ca1, mmdb::rvector &dist1, int &nCa1, mmdb::ivector &Ca2, int &nCa2, mmdb::mat44 &TMat, mmdb::realtype &rmsdAchieved, int &nAligned, int &nGaps, mmdb::realtype &seqIdentity, int &nMisD, mmdb::realtype &nCombs)ssm::Superpose
GetTMatrix(mmdb::mat44 &TMat)ssm::Superpose
GetTMatrix()ssm::Superpose
IdentifyUnmatchedSSEs(mmdb::ivector &FH, int &nFH, mmdb::ivector &FS, int &nFS, mmdb::ivector F, int mlen, PGraph G)ssm::Superpose [protected]
InitSuperpose()ssm::Superpose [protected]
isMC(int pos1, int pos2)ssm::Superpose [protected]
iterMaxssm::Superpose [protected]
iterMinssm::Superpose [protected]
MapSSEs(mmdb::PPAtom Calpha, PSpAtom a, int nres, PGraph G, RPSSEDesc SSED, int &nSSEs)ssm::Superpose [protected]
MatchQuality(int Nalign, mmdb::realtype Rmsd)ssm::Superpose
MatchQuality2(int Nalign, mmdb::realtype dist2)ssm::Superpose [protected]
maxContactssm::Superpose [protected]
maxHollowItssm::Superpose [protected]
maxRMSDssm::Superpose [protected]
minContactssm::Superpose [protected]
minCosinessm::Superpose [protected]
minQStepssm::Superpose [protected]
MMDB1ssm::Superpose [protected]
MMDB2ssm::Superpose [protected]
nalgnssm::Superpose [protected]
ncombsssm::Superpose [protected]
nFH1ssm::Superpose [protected]
nFH2ssm::Superpose [protected]
nFS1ssm::Superpose [protected]
nFS2ssm::Superpose [protected]
ngapsssm::Superpose [protected]
nmdssm::Superpose [protected]
nmisdrssm::Superpose [protected]
nres1ssm::Superpose [protected]
nres2ssm::Superpose [protected]
nSSEs1ssm::Superpose [protected]
nSSEs2ssm::Superpose [protected]
OptimizeNalign()ssm::Superpose [protected]
Q_achievedssm::Superpose [protected]
RecoverGaps(mmdb::PPAtom Ca1, PSpAtom at1, int nat1, mmdb::PPAtom Ca2, PSpAtom at2, int nat2, mmdb::realtype thresh)ssm::Superpose [protected]
Rmsd0ssm::Superpose [protected]
rmsd_achievedssm::Superpose [protected]
RV1ssm::Superpose [protected]
sdatassm::Superpose [protected]
SDistssm::Superpose [protected]
SDistAllocssm::Superpose [protected]
SelectCalphas(mmdb::PManager MMDB, PGraph G, mmdb::PPAtom &Calpha, PSpAtom &a, int &nres, int &selHnd, int selInclHnd, mmdb::cpstr selString)ssm::Superpose [protected]
selInclHnd1ssm::Superpose [protected]
selInclHnd2ssm::Superpose [protected]
selString1ssm::Superpose [protected]
selString2ssm::Superpose [protected]
seqIdentssm::Superpose [protected]
SetAllowMC(bool allowMisconnections)ssm::Superpose
SetCaSelections(mmdb::cpstr selection1, mmdb::cpstr selection2)ssm::Superpose
SetIterationLimits(int iter_max, int iter_min, int max_hollow)ssm::Superpose
shortSect1ssm::Superpose [protected]
shortSect2ssm::Superpose [protected]
sortDistssm::Superpose [protected]
SSED1ssm::Superpose [protected]
SSED2ssm::Superpose [protected]
sseGrayssm::Superpose [protected]
SSEweightssm::Superpose [protected]
Superpose()ssm::Superpose
SuperposeCalphas(PGraph G1, PGraph G2, mmdb::ivector F1, mmdb::ivector F2, int mlen, mmdb::PManager M1, mmdb::PManager M2, int selHndIncl1=0, int selHndIncl2=0)ssm::Superpose
SuperposeCalphas(PSuperposeData SD1, PSuperposeData SD2, mmdb::ivector F1, mmdb::ivector F2, int mlen)ssm::Superpose
SuperposeSSGraphs(PGraph G1, mmdb::ivector F1, PGraph G2, mmdb::ivector F2, int matchlen)ssm::Superpose
TMatrixssm::Superpose [protected]
TMxssm::Superpose [protected]
Ussm::Superpose [protected]
UnmapExcluded(PSpAtom a1, PSpAtom a2, int nres1)ssm::Superpose [protected]
Vssm::Superpose [protected]
Wssm::Superpose [protected]
~Superpose()ssm::Superpose
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