ssm::MultAlign Member List

This is the complete list of members for ssm::MultAlign, including all inherited members.
Assm::MultAlign [protected]
align(mmdb::PPManager MMDB, mmdb::psvector selstring, PPGraph Graph, int nStructures)ssm::MultAlign
AlignCalphas()ssm::MultAlign [protected]
AlignSSEs()ssm::MultAlign [protected]
AllocateMap()ssm::MultAlign [protected]
CalcConsensus()ssm::MultAlign [protected]
CalcConsensusScores()ssm::MultAlign [protected]
CalcRMSD(int mappos)ssm::MultAlign [protected]
CalcRotation(mmdb::mat44 &R)ssm::MultAlign [protected]
connectivityssm::MultAlign [protected]
CorrespondContacts(mmdb::realtype contDist)ssm::MultAlign [protected]
DeleteMap()ssm::MultAlign [protected]
DeletePAMatches()ssm::MultAlign [protected]
DeleteStructures()ssm::MultAlign [protected]
DeselectCalphas()ssm::MultAlign [protected]
EvaluateMapping(mmdb::PMContact C)ssm::MultAlign [protected]
FreeMemory()ssm::MultAlign [protected]
getAlignment(int structNo, mmdb::ivector &Ca, int &nres)ssm::MultAlign
getAlignScores(int &n_align, int &n_SSEs, mmdb::realtype &rmsd, mmdb::realtype &Qscore)ssm::MultAlign
GetBestMatch(PMAStruct S1, PMAStruct S2)ssm::MultAlign [protected]
getConsensusScores(mmdb::rvector &cons_x, mmdb::rvector &cons_y, mmdb::rvector &cons_z, int &cons_len, mmdb::rmatrix &m_rmsd, mmdb::rmatrix &m_Qscore, mmdb::rmatrix &m_seqId)ssm::MultAlign
GetMAOutput(PPMAOutput &MAOut, int &nrows, int &ncols)ssm::MultAlign
getMaxNofIter()ssm::MultAlign [inline]
GetMSSEOutput(PPMSSEOutput &MSSEOut, int &nrows, int &ncols)ssm::MultAlign
getNres(int structNo)ssm::MultAlign
GetSSEMatchingStats()ssm::MultAlign [protected]
getTMatrix(mmdb::mat44 &TMatrix, int structNo)ssm::MultAlign
InitMultAlign()ssm::MultAlign [protected]
MakeFirstGuess()ssm::MultAlign [protected]
Mapssm::MultAlign [protected]
Map_nrowsssm::MultAlign [protected]
MatchQuality(int Nalgn, int N1, int N2, mmdb::realtype dist2)ssm::MultAlign [protected]
MatchQuality2(int Nalgn, mmdb::realtype dist2)ssm::MultAlign [protected]
maxContssm::MultAlign [protected]
maxHollowItssm::MultAlign [protected]
maxIterssm::MultAlign [protected]
maxNresssm::MultAlign [protected]
maxNVssm::MultAlign [protected]
minContssm::MultAlign [protected]
minIterssm::MultAlign [protected]
minNresssm::MultAlign [protected]
MultAlign()ssm::MultAlign
MultAlign(mmdb::io::RPStream Object)ssm::MultAlign
mx_Qscoressm::MultAlign [protected]
mx_rmsdssm::MultAlign [protected]
mx_seqIdssm::MultAlign [protected]
Nalignssm::MultAlign [protected]
nSSEalignssm::MultAlign [protected]
nStructssm::MultAlign [protected]
nStructAllocssm::MultAlign [protected]
OptimizeAlignments()ssm::MultAlign [protected]
PMssm::MultAlign [protected]
precisionssm::MultAlign [protected]
printStats()ssm::MultAlign [protected]
ProgFuncDatassm::MultAlign [protected]
ProgressFuncssm::MultAlign [protected]
Q_achievedssm::MultAlign [protected]
read(mmdb::io::RFile f)ssm::MultAlign
RefineGraphs()ssm::MultAlign [protected]
Rmsd0ssm::MultAlign [protected]
rmsd_achievedssm::MultAlign [protected]
Sssm::MultAlign [protected]
SelectCalphas()ssm::MultAlign [protected]
setProgressFunction(void *UserData, PMAProgressFunc Fnc)ssm::MultAlign
SortStructures()ssm::MultAlign [protected]
superposessm::MultAlign [protected]
Ussm::MultAlign [protected]
Vssm::MultAlign [protected]
v1ssm::MultAlign [protected]
v2ssm::MultAlign [protected]
vqssm::MultAlign [protected]
Wssm::MultAlign [protected]
write(mmdb::io::RFile f)ssm::MultAlign
WriteMatchedSSEs(mmdb::io::RFile f, bool shortTable=false)ssm::MultAlign
WriteMultAlign(mmdb::io::RFile f)ssm::MultAlign
WriteSuperposed(mmdb::cpstr fileName)ssm::MultAlign
xcssm::MultAlign [protected]
ycssm::MultAlign [protected]
Zssm::MultAlign [protected]
zcssm::MultAlign [protected]
~MultAlign()ssm::MultAlign
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