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LOOP/profile.cpp LOOP/rapper.cpp LOOP/phipsi.cpp \
LOOP/utils.cpp LOOP/exhaustive.cpp LOOP/restraints.cpp LOOP/rotamers.cpp \
LOOP/side_chains.cpp LOOP/lib_pir.cpp LOOP/visualize.cpp LOOP/cluster.cpp \
LOOP/loop.cpp LOOP/analyze.cpp LOOP/energy.cpp LOOP/fminimize.cpp \
LOOP/cores.cpp LOOP/jacobi.cpp LOOP/ca_trace.cpp LOOP/setup.cpp \
LOOP/dict.cpp LOOP/pop_search.cpp LOOP/contree.cpp \
LOOP/comparative.cpp LOOP/map.cpp LOOP/fread.cpp LOOP/align.cpp \
LOOP/rampage.cpp LOOP/abinitio.cpp LOOP/3Dgrid.cpp \
LOOP/rapdf.cpp LOOP/array.cpp LOOP/hbonds.cpp LOOP/ellipsoids.cpp \
LOOP/read_restraint.cpp LOOP/contactmap.cpp \
LOOP/params.cpp LOOP/typed_value.cpp LOOP/misc.cpp LOOP/residue.cpp \
LOOP/atom.cpp LOOP/psa.cpp LOOP/edm_sidechains.cpp \
LOOP/hash_table.cpp LOOP/surface.cpp LOOP/parse.cpp LOOP/band.cpp \
LOOP/edensity.cpp LOOP/read_map.cpp LOOP/iterator.cpp \
LOOP/residue_range.cpp LOOP/pop_search_frags.cpp LOOP/saxs.cpp \
LOOP/lib_choral.cpp LOOP/pdf.cpp LOOP/WeightedDistribMean.cpp \
LOOP/3Dgeom.h             LOOP/FlankPPSource.h     LOOP/pop_search.h \
LOOP/3Dgrid.h             LOOP/fminimize.h         LOOP/profile.h \
LOOP/aaconv.h             LOOP/fread.h             LOOP/psa.h \
LOOP/abinitio.h           LOOP/hash_table.h        LOOP/queue.h \
LOOP/align.h              LOOP/hbonds.h            LOOP/rampage.h \
LOOP/analyze.h            LOOP/heap.h              LOOP/ran2.h \
LOOP/array.h              LOOP/iterator.h          LOOP/rapdf.h \
LOOP/atomconv.h           LOOP/jacobi.h            LOOP/read_map.h \
LOOP/atom.h               LOOP/kip.h               LOOP/read_restraint.h \
LOOP/band.h               LOOP/kip_pdb.h           LOOP/residue.h \
LOOP/bitfield.h           LOOP/kip_snake.h         LOOP/residue_range.h \
LOOP/build_residue.h      LOOP/LastKphipsiSource.h LOOP/restraints.h \
LOOP/build_side_chain.h   LOOP/lib_choral.h        LOOP/rotamers.h \
LOOP/ca_trace.h           LOOP/lib_cluster.h       LOOP/saxs.h \
LOOP/cluster.h            LOOP/lib_frags.h         LOOP/search_residue.h \
LOOP/cluster_side_chain.h LOOP/lib_pir.h           LOOP/setup.h \
LOOP/comparative.h        LOOP/list.h              LOOP/side_chains.h \
LOOP/contactmap.h         LOOP/localMove.h         LOOP/space_grid.h \
LOOP/contree.h            LOOP/loop.h              LOOP/surface.h \
LOOP/cores.h              LOOP/map.h               LOOP/target.h \
LOOP/ctdata.h             LOOP/measure.h           LOOP/TrimerSource.h \
LOOP/dict.h               LOOP/misc.h              LOOP/typed_value.h \
LOOP/edensity.h           LOOP/params.h            LOOP/utils.h \
LOOP/edm_sidechains.h     LOOP/parse.h             LOOP/visualize.h \
LOOP/ellipsoids.h         LOOP/pdf.h               LOOP/WeightedDistribMean.h \
LOOP/energy.h             LOOP/phipsi.h            LOOP/xmlmsg.h \
LOOP/exhaustive.h         LOOP/PhipsiSource.h

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$(srcdir)/config.h.in: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) 
	($(am__cd) $(top_srcdir) && $(AUTOHEADER))
	rm -f stamp-h1
	touch $@

distclean-hdr:
	-rm -f config.h stamp-h1
install-binPROGRAMS: $(bin_PROGRAMS)
	@$(NORMAL_INSTALL)
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	if test -n "$$list"; then \
	  echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
	fi; \
	for p in $$list; do echo "$$p $$p"; done | \
	sed 's/$(EXEEXT)$$//' | \
	while read p p1; do if test -f $$p \
	  ; then echo "$$p"; echo "$$p"; else :; fi; \
	done | \
	sed -e 'p;s,.*/,,;n;h' \
	    -e 's|.*|.|' \
	    -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
	sed 'N;N;N;s,\n, ,g' | \
	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
	    if ($$2 == $$4) files[d] = files[d] " " $$1; \
	    else { print "f", $$3 "/" $$4, $$1; } } \
	  END { for (d in files) print "f", d, files[d] }' | \
	while read type dir files; do \
	    if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
	    test -z "$$files" || { \
	      echo " $(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
	      $(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
	    } \
	; done

uninstall-binPROGRAMS:
	@$(NORMAL_UNINSTALL)
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	files=`for p in $$list; do echo "$$p"; done | \
	  sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
	      -e 's/$$/$(EXEEXT)/' \
	`; \
	test -n "$$list" || exit 0; \
	echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
	cd "$(DESTDIR)$(bindir)" && rm -f $$files

clean-binPROGRAMS:
	-test -z "$(bin_PROGRAMS)" || rm -f $(bin_PROGRAMS)
LOOP/$(am__dirstamp):
	@$(MKDIR_P) LOOP
	@: > LOOP/$(am__dirstamp)

LOOP/rapper$(EXEEXT): $(LOOP_rapper_OBJECTS) $(LOOP_rapper_DEPENDENCIES) $(EXTRA_LOOP_rapper_DEPENDENCIES) LOOP/$(am__dirstamp)
	@rm -f LOOP/rapper$(EXEEXT)
	$(AM_V_CXXLD)$(CXXLINK) $(LOOP_rapper_OBJECTS) $(LOOP_rapper_LDADD) $(LIBS)

mostlyclean-compile:
	-rm -f *.$(OBJEXT)

distclean-compile:
	-rm -f *.tab.c

@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/3Dgeom.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/3Dgrid.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/WeightedDistribMean.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/aaconv.Po@am__quote@
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@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/align.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/analyze.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/array.Po@am__quote@
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@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/atomconv.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/band.Po@am__quote@
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@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cluster.Po@am__quote@
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@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/edensity.Po@am__quote@
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@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/energy.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/exhaustive.Po@am__quote@
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@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fread.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_table.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hbonds.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/heap.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/iterator.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/jacobi.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/kip_pdb.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/kip_snake.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/lib_choral.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/lib_frags.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/lib_pir.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/list.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/loop.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/map.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/measure.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/misc.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/params.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/parse.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/pdf.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/phipsi.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/pop_search.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/pop_search_frags.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/profile.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/psa.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/queue.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/rampage.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/ran2.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/rapdf.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/rapper.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/read_map.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/read_restraint.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/residue.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/residue_range.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/restraints.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/rotamers.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/saxs.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/search_residue.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/setup.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/side_chains.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/space_grid.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/surface.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/typed_value.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/utils.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/visualize.Po@am__quote@

.cpp.o:
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ $<

.cpp.obj:
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`

aaconv.o: LOOP/aaconv.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT aaconv.o -MD -MP -MF $(DEPDIR)/aaconv.Tpo -c -o aaconv.o `test -f 'LOOP/aaconv.cpp' || echo '$(srcdir)/'`LOOP/aaconv.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/aaconv.Tpo $(DEPDIR)/aaconv.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='LOOP/aaconv.cpp' object='aaconv.o' libtool=no @AMDEPBACKSLASH@
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@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o aaconv.o `test -f 'LOOP/aaconv.cpp' || echo '$(srcdir)/'`LOOP/aaconv.cpp

aaconv.obj: LOOP/aaconv.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT aaconv.obj -MD -MP -MF $(DEPDIR)/aaconv.Tpo -c -o aaconv.obj `if test -f 'LOOP/aaconv.cpp'; then $(CYGPATH_W) 'LOOP/aaconv.cpp'; else $(CYGPATH_W) '$(srcdir)/LOOP/aaconv.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/aaconv.Tpo $(DEPDIR)/aaconv.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='LOOP/aaconv.cpp' object='aaconv.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o aaconv.obj `if test -f 'LOOP/aaconv.cpp'; then $(CYGPATH_W) 'LOOP/aaconv.cpp'; else $(CYGPATH_W) '$(srcdir)/LOOP/aaconv.cpp'; fi`

atomconv.o: LOOP/atomconv.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT atomconv.o -MD -MP -MF $(DEPDIR)/atomconv.Tpo -c -o atomconv.o `test -f 'LOOP/atomconv.cpp' || echo '$(srcdir)/'`LOOP/atomconv.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/atomconv.Tpo $(DEPDIR)/atomconv.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='LOOP/atomconv.cpp' object='atomconv.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o atomconv.o `test -f 'LOOP/atomconv.cpp' || echo '$(srcdir)/'`LOOP/atomconv.cpp

atomconv.obj: LOOP/atomconv.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT atomconv.obj -MD -MP -MF $(DEPDIR)/atomconv.Tpo -c -o atomconv.obj `if test -f 'LOOP/atomconv.cpp'; then $(CYGPATH_W) 'LOOP/atomconv.cpp'; else $(CYGPATH_W) '$(srcdir)/LOOP/atomconv.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/atomconv.Tpo $(DEPDIR)/atomconv.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='LOOP/atomconv.cpp' object='atomconv.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o atomconv.obj `if test -f 'LOOP/atomconv.cpp'; then $(CYGPATH_W) 'LOOP/atomconv.cpp'; else $(CYGPATH_W) '$(srcdir)/LOOP/atomconv.cpp'; fi`

kip_snake.o: LOOP/kip_snake.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT kip_snake.o -MD -MP -MF $(DEPDIR)/kip_snake.Tpo -c -o kip_snake.o `test -f 'LOOP/kip_snake.cpp' || echo '$(srcdir)/'`LOOP/kip_snake.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/kip_snake.Tpo $(DEPDIR)/kip_snake.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='LOOP/kip_snake.cpp' object='kip_snake.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o kip_snake.o `test -f 'LOOP/kip_snake.cpp' || echo '$(srcdir)/'`LOOP/kip_snake.cpp

kip_snake.obj: LOOP/kip_snake.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT kip_snake.obj -MD -MP -MF $(DEPDIR)/kip_snake.Tpo -c -o kip_snake.obj `if test -f 'LOOP/kip_snake.cpp'; then $(CYGPATH_W) 'LOOP/kip_snake.cpp'; else $(CYGPATH_W) '$(srcdir)/LOOP/kip_snake.cpp'; fi`
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kip_pdb.o: LOOP/kip_pdb.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT kip_pdb.o -MD -MP -MF $(DEPDIR)/kip_pdb.Tpo -c -o kip_pdb.o `test -f 'LOOP/kip_pdb.cpp' || echo '$(srcdir)/'`LOOP/kip_pdb.cpp
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@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='LOOP/kip_pdb.cpp' object='kip_pdb.o' libtool=no @AMDEPBACKSLASH@
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kip_pdb.obj: LOOP/kip_pdb.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT kip_pdb.obj -MD -MP -MF $(DEPDIR)/kip_pdb.Tpo -c -o kip_pdb.obj `if test -f 'LOOP/kip_pdb.cpp'; then $(CYGPATH_W) 'LOOP/kip_pdb.cpp'; else $(CYGPATH_W) '$(srcdir)/LOOP/kip_pdb.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/kip_pdb.Tpo $(DEPDIR)/kip_pdb.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='LOOP/kip_pdb.cpp' object='kip_pdb.obj' libtool=no @AMDEPBACKSLASH@
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measure.o: LOOP/measure.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT measure.o -MD -MP -MF $(DEPDIR)/measure.Tpo -c -o measure.o `test -f 'LOOP/measure.cpp' || echo '$(srcdir)/'`LOOP/measure.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/measure.Tpo $(DEPDIR)/measure.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='LOOP/measure.cpp' object='measure.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o measure.o `test -f 'LOOP/measure.cpp' || echo '$(srcdir)/'`LOOP/measure.cpp

measure.obj: LOOP/measure.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT measure.obj -MD -MP -MF $(DEPDIR)/measure.Tpo -c -o measure.obj `if test -f 'LOOP/measure.cpp'; then $(CYGPATH_W) 'LOOP/measure.cpp'; else $(CYGPATH_W) '$(srcdir)/LOOP/measure.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/measure.Tpo $(DEPDIR)/measure.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='LOOP/measure.cpp' object='measure.obj' libtool=no @AMDEPBACKSLASH@
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@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o measure.obj `if test -f 'LOOP/measure.cpp'; then $(CYGPATH_W) 'LOOP/measure.cpp'; else $(CYGPATH_W) '$(srcdir)/LOOP/measure.cpp'; fi`

lib_frags.o: LOOP/lib_frags.cpp
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queue.obj: LOOP/queue.cpp
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space_grid.o: LOOP/space_grid.cpp
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bitfield.o: LOOP/bitfield.cpp
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build_side_chain.o: LOOP/build_side_chain.cpp
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rapper.o: LOOP/rapper.cpp
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rapper.obj: LOOP/rapper.cpp
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phipsi.o: LOOP/phipsi.cpp
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utils.o: LOOP/utils.cpp
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restraints.o: LOOP/restraints.cpp
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restraints.obj: LOOP/restraints.cpp
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rotamers.o: LOOP/rotamers.cpp
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rotamers.obj: LOOP/rotamers.cpp
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side_chains.o: LOOP/side_chains.cpp
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loop.o: LOOP/loop.cpp
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loop.obj: LOOP/loop.cpp
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analyze.o: LOOP/analyze.cpp
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energy.o: LOOP/energy.cpp
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jacobi.o: LOOP/jacobi.cpp
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ca_trace.o: LOOP/ca_trace.cpp
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setup.o: LOOP/setup.cpp
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setup.obj: LOOP/setup.cpp
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dict.o: LOOP/dict.cpp
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dict.obj: LOOP/dict.cpp
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pop_search.o: LOOP/pop_search.cpp
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pop_search.obj: LOOP/pop_search.cpp
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contree.o: LOOP/contree.cpp
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contree.obj: LOOP/contree.cpp
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comparative.o: LOOP/comparative.cpp
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comparative.obj: LOOP/comparative.cpp
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map.o: LOOP/map.cpp
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map.obj: LOOP/map.cpp
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fread.o: LOOP/fread.cpp
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fread.obj: LOOP/fread.cpp
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align.o: LOOP/align.cpp
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align.obj: LOOP/align.cpp
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rampage.o: LOOP/rampage.cpp
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rampage.obj: LOOP/rampage.cpp
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abinitio.o: LOOP/abinitio.cpp
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abinitio.obj: LOOP/abinitio.cpp
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3Dgrid.o: LOOP/3Dgrid.cpp
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3Dgrid.obj: LOOP/3Dgrid.cpp
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rapdf.o: LOOP/rapdf.cpp
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rapdf.obj: LOOP/rapdf.cpp
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array.o: LOOP/array.cpp
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array.obj: LOOP/array.cpp
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hbonds.o: LOOP/hbonds.cpp
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hbonds.obj: LOOP/hbonds.cpp
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ellipsoids.o: LOOP/ellipsoids.cpp
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ellipsoids.obj: LOOP/ellipsoids.cpp
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read_restraint.o: LOOP/read_restraint.cpp
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read_restraint.obj: LOOP/read_restraint.cpp
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contactmap.o: LOOP/contactmap.cpp
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contactmap.obj: LOOP/contactmap.cpp
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params.o: LOOP/params.cpp
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params.obj: LOOP/params.cpp
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typed_value.o: LOOP/typed_value.cpp
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typed_value.obj: LOOP/typed_value.cpp
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misc.o: LOOP/misc.cpp
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misc.obj: LOOP/misc.cpp
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residue.o: LOOP/residue.cpp
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residue.obj: LOOP/residue.cpp
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atom.o: LOOP/atom.cpp
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atom.obj: LOOP/atom.cpp
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psa.o: LOOP/psa.cpp
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psa.obj: LOOP/psa.cpp
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edm_sidechains.o: LOOP/edm_sidechains.cpp
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edm_sidechains.obj: LOOP/edm_sidechains.cpp
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hash_table.o: LOOP/hash_table.cpp
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hash_table.obj: LOOP/hash_table.cpp
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surface.o: LOOP/surface.cpp
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surface.obj: LOOP/surface.cpp
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parse.o: LOOP/parse.cpp
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parse.obj: LOOP/parse.cpp
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band.o: LOOP/band.cpp
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band.obj: LOOP/band.cpp
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edensity.o: LOOP/edensity.cpp
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edensity.obj: LOOP/edensity.cpp
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read_map.o: LOOP/read_map.cpp
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iterator.o: LOOP/iterator.cpp
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	tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
	$(am__post_remove_distdir)

dist-shar: distdir
	shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
	$(am__post_remove_distdir)

dist-zip: distdir
	-rm -f $(distdir).zip
	zip -rq $(distdir).zip $(distdir)
	$(am__post_remove_distdir)

dist dist-all:
	$(MAKE) $(AM_MAKEFLAGS) $(DIST_TARGETS) am__post_remove_distdir='@:'
	$(am__post_remove_distdir)

# This target untars the dist file and tries a VPATH configuration.  Then
# it guarantees that the distribution is self-contained by making another
# tarfile.
distcheck: dist
	case '$(DIST_ARCHIVES)' in \
	*.tar.gz*) \
	  GZIP=$(GZIP_ENV) gzip -dc $(distdir).tar.gz | $(am__untar) ;;\
	*.tar.bz2*) \
	  bzip2 -dc $(distdir).tar.bz2 | $(am__untar) ;;\
	*.tar.lz*) \
	  lzip -dc $(distdir).tar.lz | $(am__untar) ;;\
	*.tar.xz*) \
	  xz -dc $(distdir).tar.xz | $(am__untar) ;;\
	*.tar.Z*) \
	  uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
	*.shar.gz*) \
	  GZIP=$(GZIP_ENV) gzip -dc $(distdir).shar.gz | unshar ;;\
	*.zip*) \
	  unzip $(distdir).zip ;;\
	esac
	chmod -R a-w $(distdir)
	chmod u+w $(distdir)
	mkdir $(distdir)/_build $(distdir)/_inst
	chmod a-w $(distdir)
	test -d $(distdir)/_build || exit 0; \
	dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
	  && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
	  && am__cwd=`pwd` \
	  && $(am__cd) $(distdir)/_build \
	  && ../configure --srcdir=.. --prefix="$$dc_install_base" \
	    $(AM_DISTCHECK_CONFIGURE_FLAGS) \
	    $(DISTCHECK_CONFIGURE_FLAGS) \
	  && $(MAKE) $(AM_MAKEFLAGS) \
	  && $(MAKE) $(AM_MAKEFLAGS) dvi \
	  && $(MAKE) $(AM_MAKEFLAGS) check \
	  && $(MAKE) $(AM_MAKEFLAGS) install \
	  && $(MAKE) $(AM_MAKEFLAGS) installcheck \
	  && $(MAKE) $(AM_MAKEFLAGS) uninstall \
	  && $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
	        distuninstallcheck \
	  && chmod -R a-w "$$dc_install_base" \
	  && ({ \
	       (cd ../.. && umask 077 && mkdir "$$dc_destdir") \
	       && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
	       && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
	       && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
	            distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
	      } || { rm -rf "$$dc_destdir"; exit 1; }) \
	  && rm -rf "$$dc_destdir" \
	  && $(MAKE) $(AM_MAKEFLAGS) dist \
	  && rm -rf $(DIST_ARCHIVES) \
	  && $(MAKE) $(AM_MAKEFLAGS) distcleancheck \
	  && cd "$$am__cwd" \
	  || exit 1
	$(am__post_remove_distdir)
	@(echo "$(distdir) archives ready for distribution: "; \
	  list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
	  sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x'
distuninstallcheck:
	@test -n '$(distuninstallcheck_dir)' || { \
	  echo 'ERROR: trying to run $@ with an empty' \
	       '$$(distuninstallcheck_dir)' >&2; \
	  exit 1; \
	}; \
	$(am__cd) '$(distuninstallcheck_dir)' || { \
	  echo 'ERROR: cannot chdir into $(distuninstallcheck_dir)' >&2; \
	  exit 1; \
	}; \
	test `$(am__distuninstallcheck_listfiles) | wc -l` -eq 0 \
	   || { echo "ERROR: files left after uninstall:" ; \
	        if test -n "$(DESTDIR)"; then \
	          echo "  (check DESTDIR support)"; \
	        fi ; \
	        $(distuninstallcheck_listfiles) ; \
	        exit 1; } >&2
distcleancheck: distclean
	@if test '$(srcdir)' = . ; then \
	  echo "ERROR: distcleancheck can only run from a VPATH build" ; \
	  exit 1 ; \
	fi
	@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
	  || { echo "ERROR: files left in build directory after distclean:" ; \
	       $(distcleancheck_listfiles) ; \
	       exit 1; } >&2
check-am: all-am
check: check-am
all-am: Makefile $(PROGRAMS) $(DATA) config.h
installdirs:
	for dir in "$(DESTDIR)$(bindir)" "$(DESTDIR)$(pkgdatadir)" "$(DESTDIR)$(pkgdata2dir)"; do \
	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
	done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	if test -z '$(STRIP)'; then \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	      install; \
	else \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
	fi
mostlyclean-generic:

clean-generic:

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
	-rm -f LOOP/$(am__dirstamp)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-binPROGRAMS clean-generic mostlyclean-am

distclean: distclean-am
	-rm -f $(am__CONFIG_DISTCLEAN_FILES)
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
	distclean-hdr distclean-tags

dvi: dvi-am

dvi-am:

html: html-am

html-am:

info: info-am

info-am:

install-data-am: install-dist_pkgdata2DATA install-dist_pkgdataDATA

install-dvi: install-dvi-am

install-dvi-am:

install-exec-am: install-binPROGRAMS

install-html: install-html-am

install-html-am:

install-info: install-info-am

install-info-am:

install-man:

install-pdf: install-pdf-am

install-pdf-am:

install-ps: install-ps-am

install-ps-am:

installcheck-am:

maintainer-clean: maintainer-clean-am
	-rm -f $(am__CONFIG_DISTCLEAN_FILES)
	-rm -rf $(top_srcdir)/autom4te.cache
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-compile mostlyclean-generic

pdf: pdf-am

pdf-am:

ps: ps-am

ps-am:

uninstall-am: uninstall-binPROGRAMS uninstall-dist_pkgdata2DATA \
	uninstall-dist_pkgdataDATA

.MAKE: all install-am install-strip

.PHONY: CTAGS GTAGS TAGS all all-am am--refresh check check-am clean \
	clean-binPROGRAMS clean-cscope clean-generic cscope \
	cscopelist-am ctags ctags-am dist dist-all dist-bzip2 \
	dist-gzip dist-lzip dist-shar dist-tarZ dist-xz dist-zip \
	distcheck distclean distclean-compile distclean-generic \
	distclean-hdr distclean-tags distcleancheck distdir \
	distuninstallcheck dvi dvi-am html html-am info info-am \
	install install-am install-binPROGRAMS install-data \
	install-data-am install-dist_pkgdata2DATA \
	install-dist_pkgdataDATA install-dvi install-dvi-am \
	install-exec install-exec-am install-html install-html-am \
	install-info install-info-am install-man install-pdf \
	install-pdf-am install-ps install-ps-am install-strip \
	installcheck installcheck-am installdirs maintainer-clean \
	maintainer-clean-generic mostlyclean mostlyclean-compile \
	mostlyclean-generic pdf pdf-am ps ps-am tags tags-am uninstall \
	uninstall-am uninstall-binPROGRAMS uninstall-dist_pkgdata2DATA \
	uninstall-dist_pkgdataDATA


# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT: