mmdb::math::Alignment Member List

This is the complete list of members for mmdb::math::Alignment, including all inherited members.

AdjustEnds(cpstr S, cpstr T, int J, int I)	mmdb::math::Alignment	[protected]
AlgnS	mmdb::math::Alignment	[protected]
AlgnT	mmdb::math::Alignment	[protected]
Align(cpstr S, cpstr T, ALIGN_METHOD Method=ALIGN_GLOBAL)	mmdb::math::Alignment
AlignKey	mmdb::math::Alignment	[protected]
Alignment()	mmdb::math::Alignment
Alignment(io::RPStream Object)	mmdb::math::Alignment
Backtrace(cpstr S, cpstr T, int J, int I, bool StopAtZero)	mmdb::math::Alignment	[protected]
BuildGATable(cpstr S, cpstr T, bool FreeSEnd, bool FreeTEnd)	mmdb::math::Alignment	[protected]
BuildLATable(cpstr S, cpstr T)	mmdb::math::Alignment	[protected]
ET	mmdb::math::Alignment	[protected]
FreeMemory()	mmdb::math::Alignment	[protected, virtual]
FT	mmdb::math::Alignment	[protected]
GetAlignedS()	mmdb::math::Alignment	[inline]
GetAlignedT()	mmdb::math::Alignment	[inline]
GetScore()	mmdb::math::Alignment	[inline]
GetSeqId()	mmdb::math::Alignment
GetSimilarity()	mmdb::math::Alignment
GetSpace()	mmdb::math::Alignment	[inline]
InitAlignment()	mmdb::math::Alignment	[protected, virtual]
OutputResults(io::RFile f, cpstr S, cpstr T)	mmdb::math::Alignment	[virtual]
PrintVT(cpstr S, cpstr T)	mmdb::math::Alignment	[protected]
read(io::RFile f)	mmdb::math::Alignment
mmdb::io::Stream::read(RFile)	mmdb::io::Stream	[inline, virtual]
Score(char A, char B)	mmdb::math::Alignment	[protected, virtual]
SEq	mmdb::math::Alignment	[protected]
SetAffineModel(realtype WGap, realtype WSpace)	mmdb::math::Alignment
SetScores(realtype SEqual, realtype SNEqual)	mmdb::math::Alignment
SLen	mmdb::math::Alignment	[protected]
SNEq	mmdb::math::Alignment	[protected]
Space	mmdb::math::Alignment	[protected]
Stream()	mmdb::io::Stream	[inline]
Stream(RPStream)	mmdb::io::Stream	[inline]
TLen	mmdb::math::Alignment	[protected]
VAchieved	mmdb::math::Alignment	[protected]
VT	mmdb::math::Alignment	[protected]
Wg	mmdb::math::Alignment	[protected]
write(io::RFile f)	mmdb::math::Alignment
mmdb::io::Stream::write(RFile)	mmdb::io::Stream	[inline, virtual]
Ws	mmdb::math::Alignment	[protected]
~Alignment()	mmdb::math::Alignment
~Stream()	mmdb::io::Stream	[inline, virtual]