, including all inherited members.
| _copy(PModel Model) | mmdb::Model | [protected] |
| _copy(PModel Model, PPAtom atom, int &atom_index) | mmdb::Model | [protected] |
| _ExcludeChain(const ChainID chainID) | mmdb::Model | [protected, virtual] |
| AddAtom(const ChainID chID, int seqNo, const InsCode insCode, PAtom atom) | mmdb::Model | |
| AddAtom(const ChainID chID, int resNo, PAtom atom) | mmdb::Model | |
| AddAtom(int chNo, int seqNo, const InsCode insCode, PAtom atom) | mmdb::Model | |
| AddAtom(int chNo, int resNo, PAtom atom) | mmdb::Model | |
| AddAtomArray(int) | mmdb::ProModel | [inline, virtual] |
| AddChain(PChain chn) | mmdb::Model | [virtual] |
| AddCisPep(PCisPep cisPep) | mmdb::Model | |
| AddLink(PLink link) | mmdb::Model | |
| AddLinkR(PLinkR linkR) | mmdb::Model | |
| AddResidue(const ChainID chainID, PResidue res) | mmdb::Model | |
| AddResidue(int chainNo, PResidue res) | mmdb::Model | |
| ApplyTransform(mat44 &TMatrix) | mmdb::Model | |
| Atom class | mmdb::Model | [friend] |
| BondManager class | mmdb::Model | [friend] |
| CalAtomStatistics(RAtomStat AS) | mmdb::Model | |
| CalcSecStructure(bool flagBulge=true, int aminoSelHnd=-1) | mmdb::Model | |
| chain | mmdb::Model | [protected] |
| Chain class | mmdb::Model | [friend] |
| CheckInAtoms() | mmdb::Model | [protected] |
| CheckMask(PMask Mask) | mmdb::Mask | |
| cisPeps | mmdb::Model | [protected] |
| ClearMask() | mmdb::Mask | |
| ConvertPDBString(pstr PDBString) | mmdb::Model | |
| CoorManager class | mmdb::Model | [friend] |
| Copy(PModel model) | mmdb::Model | |
| CopyCisPeps(PModel model) | mmdb::Model | |
| CopyHets(PModel model) | mmdb::Model | |
| CopyLinkRs(PModel model) | mmdb::Model | |
| CopyLinks(PModel model) | mmdb::Model | |
| CopyMask(PMask Mask) | mmdb::Mask | |
| CopySecStructure(PModel model) | mmdb::Model | |
| CreateChain(const ChainID chID) | mmdb::Model | |
| DeleteAllAtoms(const ChainID chID, int seqNo, const InsCode insCode) | mmdb::Model | |
| DeleteAllAtoms(const ChainID chID, int resNo) | mmdb::Model | |
| DeleteAllAtoms(const ChainID chID) | mmdb::Model | |
| DeleteAllAtoms(int chNo, int seqNo, const InsCode insCode) | mmdb::Model | |
| DeleteAllAtoms(int chNo, int resNo) | mmdb::Model | |
| DeleteAllAtoms(int chNo) | mmdb::Model | |
| DeleteAllAtoms() | mmdb::Model | |
| DeleteAllChains() | mmdb::Model | |
| DeleteAllResidues(const ChainID chainID) | mmdb::Model | |
| DeleteAllResidues(int chainNo) | mmdb::Model | |
| DeleteAllResidues() | mmdb::Model | |
| DeleteAltLocs() | mmdb::Model | |
| DeleteAtom(const ChainID chID, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::Model | |
| DeleteAtom(const ChainID chID, int seqNo, const InsCode insCode, int atomNo) | mmdb::Model | |
| DeleteAtom(const ChainID chID, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::Model | |
| DeleteAtom(const ChainID chID, int resNo, int atomNo) | mmdb::Model | |
| DeleteAtom(int chNo, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::Model | |
| DeleteAtom(int chNo, int seqNo, const InsCode insCode, int atomNo) | mmdb::Model | |
| DeleteAtom(int chNo, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::Model | |
| DeleteAtom(int chNo, int resNo, int atomNo) | mmdb::Model | |
| DeleteChain(const ChainID chID) | mmdb::Model | |
| DeleteChain(int chainNo) | mmdb::Model | |
| DeleteResidue(const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::Model | |
| DeleteResidue(const ChainID chainID, int resNo) | mmdb::Model | |
| DeleteResidue(int chainNo, int seqNo, const InsCode insCode) | mmdb::Model | |
| DeleteResidue(int chainNo, int resNo) | mmdb::Model | |
| DeleteSolvent() | mmdb::Model | |
| DeleteSolventChains() | mmdb::Model | |
| Exclude | mmdb::Model | [protected] |
| Expand(int n) | mmdb::Mask | [protected] |
| ExpandAtomArray(int) | mmdb::ProModel | [inline, virtual] |
| ExpandChainArray(int nOfChains) | mmdb::Model | [protected] |
| FreeMemory() | mmdb::Model | [protected] |
| FreeUDDMemory() | mmdb::UDData | [protected] |
| GetAIndexRange(int &i1, int &i2) | mmdb::Model | |
| GetAllAtoms() | mmdb::Model | [virtual] |
| GetAtom(const ChainID chID, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::Model | |
| GetAtom(const ChainID chID, int seqNo, const InsCode insCode, int atomNo) | mmdb::Model | |
| GetAtom(const ChainID chID, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::Model | |
| GetAtom(const ChainID chID, int resNo, int atomNo) | mmdb::Model | |
| GetAtom(int chNo, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::Model | |
| GetAtom(int chNo, int seqNo, const InsCode insCode, int atomNo) | mmdb::Model | |
| GetAtom(int chNo, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::Model | |
| GetAtom(int chNo, int resNo, int atomNo) | mmdb::Model | |
| GetAtomStatistics(RAtomStat AS) | mmdb::Model | |
| GetAtomTable(const ChainID chainID, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::Model | |
| GetAtomTable(int chainNo, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::Model | |
| GetAtomTable(const ChainID chainID, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::Model | |
| GetAtomTable(int chainNo, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::Model | |
| GetAtomTable1(const ChainID chainID, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::Model | |
| GetAtomTable1(int chainNo, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::Model | |
| GetAtomTable1(const ChainID chainID, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::Model | |
| GetAtomTable1(int chainNo, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::Model | |
| GetChain(const ChainID chID) | mmdb::Model | |
| GetChain(int chainNo) | mmdb::Model | |
| GetChainCreate(const ChainID chID, bool enforceUniqueChainID) | mmdb::Model | |
| GetChainTable(PPChain &chainTable, int &NumberOfChains) | mmdb::Model | |
| GetCIF(mmcif::PData CIF) | mmdb::Model | |
| GetCIFPSClass(mmcif::PData CIF, int ClassID) | mmdb::Model | [protected] |
| GetCisPep(int CisPepNum) | mmdb::Model | |
| GetCisPeps() | mmdb::Model | [inline] |
| GetCoordHierarchy() | mmdb::Model | [inline, virtual] |
| GetEntryID() | mmdb::Model | [virtual] |
| GetHelices() | mmdb::Model | [inline] |
| GetHelix(int serialNum) | mmdb::Model | |
| GetHetInfo() | mmdb::Model | [inline] |
| getLength() | mmdb::Mask | [inline] |
| GetLink(int serialNum) | mmdb::Model | |
| GetLinkR(int serialNum) | mmdb::Model | |
| GetLinkRs() | mmdb::Model | [inline] |
| GetLinks() | mmdb::Model | [inline] |
| GetModelID(pstr modelID) | mmdb::Model | |
| GetNewChainID(ChainID chID, int length=1) | mmdb::Model | |
| getNofIUData() | mmdb::UDData | [protected] |
| getNofRUData() | mmdb::UDData | [protected] |
| getNofSUData() | mmdb::UDData | [protected] |
| GetNumberOfAllAtoms() | mmdb::Model | [virtual] |
| GetNumberOfAtoms(bool countTers) | mmdb::Model | |
| GetNumberOfAtoms(const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::Model | |
| GetNumberOfAtoms(int chainNo, int seqNo, const InsCode insCode) | mmdb::Model | |
| GetNumberOfAtoms(const ChainID chainID, int resNo) | mmdb::Model | |
| GetNumberOfAtoms(int chainNo, int resNo) | mmdb::Model | |
| GetNumberOfChains() | mmdb::Model | |
| GetNumberOfCisPeps() | mmdb::Model | |
| GetNumberOfHelices() | mmdb::Model | |
| GetNumberOfLinkRs() | mmdb::Model | |
| GetNumberOfLinks() | mmdb::Model | |
| GetNumberOfModels() | mmdb::Model | [virtual] |
| GetNumberOfResidues() | mmdb::Model | |
| GetNumberOfResidues(const ChainID chainID) | mmdb::Model | |
| GetNumberOfResidues(int chainNo) | mmdb::Model | |
| GetNumberOfSheets() | mmdb::Model | |
| GetNumberOfStrands(int sheetSerNum) | mmdb::Model | |
| GetNumberOfStrands(const SheetID sheetID) | mmdb::Model | |
| GetResidue(const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::Model | |
| GetResidue(const ChainID chainID, int resNo) | mmdb::Model | |
| GetResidue(int chainNo, int seqNo, const InsCode insCode) | mmdb::Model | |
| GetResidue(int chainNo, int resNo) | mmdb::Model | |
| GetResidueNo(const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::Model | |
| GetResidueNo(int chainNo, int seqNo, const InsCode insCode) | mmdb::Model | |
| GetResidueTable(PPResidue &resTable, int &NumberOfResidues) | mmdb::Model | |
| GetResidueTable(const ChainID chainID, PPResidue &resTable, int &NumberOfResidues) | mmdb::Model | |
| GetResidueTable(int chainNo, PPResidue &resTable, int &NumberOfResidues) | mmdb::Model | |
| GetSerNum() | mmdb::Model | [virtual] |
| GetSheet(int serialNum) | mmdb::Model | |
| GetSheet(const SheetID sheetID) | mmdb::Model | |
| GetSheetID(int serialNum, SheetID sheetID) | mmdb::Model | |
| GetSheets() | mmdb::Model | [inline] |
| GetStrand(int sheetSerNum, int strandSerNum) | mmdb::Model | |
| GetStrand(const SheetID sheetID, int strandSerNum) | mmdb::Model | |
| getUDData(int UDDhandle, int &iudd) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, realtype &rudd) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, pstr sudd, int maxLen) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, int *retcode=NULL) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, pstr &sudd) | mmdb::UDData | [protected] |
| GetUDData(int UDDhandle, int &iudd) | mmdb::Model | |
| GetUDData(int UDDhandle, realtype &rudd) | mmdb::Model | |
| GetUDData(int UDDhandle, pstr sudd, int maxLen) | mmdb::Model | |
| GetUDData(int UDDhandle, pstr &sudd) | mmdb::Model | |
| helices | mmdb::Model | [protected] |
| hetCompounds | mmdb::Model | [protected] |
| InitMask() | mmdb::Mask | [protected] |
| InitModel() | mmdb::Model | [protected] |
| InitUDData() | mmdb::UDData | [protected] |
| isInSelection(int selHnd) | mmdb::Model | |
| isMask() | mmdb::Mask | |
| IUData | mmdb::UDData | [protected] |
| linkRs | mmdb::Model | [protected] |
| links | mmdb::Model | [protected] |
| m | mmdb::Mask | [protected] |
| MakeAtomCIF(mmcif::PData CIF) | mmdb::Model | |
| MakePSCIF(mmcif::PData CIF) | mmdb::Model | |
| Manager class | mmdb::Model | [friend] |
| manager | mmdb::Model | [protected] |
| Mask() | mmdb::Mask | |
| Mask(io::RPStream Object) | mmdb::Mask | |
| MaskAtoms(PMask mask) | mmdb::Model | |
| MaskChains(PMask mask) | mmdb::Model | |
| MaskResidues(PMask mask) | mmdb::Model | |
| mlen | mmdb::Mask | [protected] |
| Model() | mmdb::Model | |
| Model(PManager MMDBF, int serialNum) | mmdb::Model | |
| Model(io::RPStream Object) | mmdb::Model | |
| MoveChain(PChain &m_chain, PPAtom m_atom, PPAtom atom, int &atom_index, int chain_ext) | mmdb::Model | |
| nChains | mmdb::Model | [protected] |
| nChainsAlloc | mmdb::Model | [protected] |
| NegMask() | mmdb::Mask | |
| NewMask(PPMask Mask, int nMasks) | mmdb::Mask | |
| PDBASCIIDump(io::RFile f) | mmdb::Model | |
| PDBASCIIDumpCP(io::RFile f) | mmdb::Model | |
| PDBASCIIDumpPS(io::RFile f) | mmdb::Model | |
| Print(pstr S) | mmdb::Mask | |
| ProModel() | mmdb::ProModel | [inline] |
| ProModel(io::RPStream Object) | mmdb::ProModel | [inline] |
| putUDData(int UDDhandle, int iudd) | mmdb::UDData | [protected] |
| putUDData(int UDDhandle, realtype rudd) | mmdb::UDData | [protected] |
| putUDData(int UDDhandle, cpstr sudd) | mmdb::UDData | [protected] |
| PutUDData(int UDDhandle, int iudd) | mmdb::Model | |
| PutUDData(int UDDhandle, realtype rudd) | mmdb::Model | |
| PutUDData(int UDDhandle, cpstr sudd) | mmdb::Model | |
| read(io::RFile f) | mmdb::Model | |
| mmdb::io::Stream::read(RFile) | mmdb::io::Stream | [inline, virtual] |
| RemoveCisPeps() | mmdb::Model | |
| RemoveHetInfo() | mmdb::Model | |
| RemoveLinkRs() | mmdb::Model | |
| RemoveLinks() | mmdb::Model | |
| RemoveMask(PMask Mask) | mmdb::Mask | |
| RemoveSecStructure() | mmdb::Model | |
| Residue class | mmdb::Model | [friend] |
| Root class | mmdb::Model | [friend] |
| RUData | mmdb::UDData | [protected] |
| SelManager class | mmdb::Model | [friend] |
| SelMask(PMask Mask) | mmdb::Mask | |
| serNum | mmdb::Model | [protected] |
| SetEntryID(const IDCode idCode) | mmdb::Model | [virtual] |
| SetMask(PMask Mask) | mmdb::Mask | |
| SetMaskBit(int BitNo) | mmdb::Mask | |
| SetMMDBManager(PManager MMDBM, int serialNum) | mmdb::Model | |
| setNofSUData(int newN) | mmdb::UDData | [protected] |
| sheets | mmdb::Model | [protected] |
| SortChains(int sortKey) | mmdb::Model | |
| Stream() | mmdb::io::Stream | [inline] |
| Stream(RPStream) | mmdb::io::Stream | [inline] |
| SUData | mmdb::UDData | [protected] |
| TrimChainTable() | mmdb::Model | |
| turns | mmdb::Model | [protected] |
| UDData() | mmdb::UDData | |
| UDData(io::RPStream Object) | mmdb::UDData | |
| UnmaskAtoms(PMask mask) | mmdb::Model | |
| UnmaskChains(PMask mask) | mmdb::Model | |
| UnmaskResidues(PMask mask) | mmdb::Model | |
| write(io::RFile f) | mmdb::Model | |
| mmdb::io::Stream::write(RFile) | mmdb::io::Stream | [inline, virtual] |
| XadMask(PMask Mask) | mmdb::Mask | |
| ~Mask() | mmdb::Mask | |
| ~Model() | mmdb::Model | |
| ~ProModel() | mmdb::ProModel | [inline] |
| ~Stream() | mmdb::io::Stream | [inline, virtual] |
| ~UDData() | mmdb::UDData | |
1.7.2
