, including all inherited members.
| _ExcludeModel(int serNum) | mmdb::Root | [protected] |
| AddAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, PAtom atom) | mmdb::CoorManager | |
| AddAtom(int modelNo, const ChainID chID, int resNo, PAtom atom) | mmdb::CoorManager | |
| AddAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, PAtom atom) | mmdb::CoorManager | |
| AddAtom(int modelNo, int chNo, int resNo, PAtom atom) | mmdb::CoorManager | |
| AddAtomArray(int inc) | mmdb::Root | [protected] |
| AddChain(int modelNo, PChain chain) | mmdb::CoorManager | |
| AddModel(PModel mdl) | mmdb::CoorManager | |
| AddNCSMatrix(mat33 &ncs_m, vect3 &ncs_v, int iGiven) | mmdb::Root | |
| AddPDBASCII(cpstr PDBFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| AddPDBASCII1(cpstr PDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| AddResidue(int modelNo, const ChainID chainID, PResidue res) | mmdb::CoorManager | |
| AddResidue(int modelNo, int chainNo, PResidue res) | mmdb::CoorManager | |
| AllocateAtom(int index, const ChainID chainID, const ChainID label_asym_id, const ResName resName, const ResName label_comp_id, int seqNum, int label_seq_id, int label_entity_id, const InsCode insCode, bool Replace) | mmdb::Root | [protected] |
| allowDuplChID | mmdb::Root | [protected] |
| ApplyNCSTransform(int NCSMatrixNo) | mmdb::Root | [protected] |
| ApplySymTransform(int SymMatrixNo, PGenSym genSym=NULL) | mmdb::CoorManager | [protected] |
| ApplyTransform(mat44 &TMatrix) | mmdb::CoorManager | |
| areBricks() | mmdb::CoorManager | [inline] |
| areMBricks() | mmdb::CoorManager | [inline] |
| atmLen | mmdb::Root | [protected] |
| atom | mmdb::Root | [protected] |
| BondManager() | mmdb::BondManager | |
| BondManager(io::RPStream Object) | mmdb::BondManager | |
| brick | mmdb::CoorManager | [protected] |
| brick_size | mmdb::CoorManager | [protected] |
| BringToUnitCell() | mmdb::CoorManager | |
| CheckAtomPlace(int index, cpstr L) | mmdb::Root | [protected] |
| CheckAtomPlace(int index, mmcif::PLoop Loop) | mmdb::Root | [protected] |
| CheckInAtom(int index, PAtom A) | mmdb::Root | [protected] |
| CheckInAtoms(int index, PPAtom A, int natms) | mmdb::Root | [protected] |
| CheckMask(PMask Mask) | mmdb::Mask | |
| CIF | mmdb::Root | [protected] |
| ClearMask() | mmdb::Mask | |
| CoorIDCode | mmdb::CoorManager | |
| CoorManager() | mmdb::CoorManager | |
| CoorManager(io::RPStream Object) | mmdb::CoorManager | |
| Copy(PManager MMDB, COPY_MASK CopyMask) | mmdb::Manager | |
| mmdb::BondManager::Copy(PRoot MMDBRoot) | mmdb::Root | |
| CopyMask(PMask Mask) | mmdb::Mask | |
| crChain | mmdb::Root | [protected] |
| crModel | mmdb::Root | [protected] |
| crRes | mmdb::Root | [protected] |
| cryst | mmdb::Root | [protected] |
| CrystReady() | mmdb::Root | |
| DefPath | mmdb::Root | [protected] |
| Delete(word DelMask) | mmdb::Manager | |
| DeleteAllAtoms(int modelNo, const ChainID chID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, const ChainID chID, int resNo) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, const ChainID chID) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, int chNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, int chNo, int resNo) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, int chNo) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo) | mmdb::CoorManager | |
| DeleteAllAtoms() | mmdb::CoorManager | |
| DeleteAllChains(int modelNo) | mmdb::CoorManager | |
| DeleteAllChains() | mmdb::CoorManager | |
| DeleteAllModels() | mmdb::Root | |
| DeleteAllResidues(int modelNo, const ChainID chainID) | mmdb::CoorManager | |
| DeleteAllResidues(int modelNo, int chainNo) | mmdb::CoorManager | |
| DeleteAllResidues(int modelNo) | mmdb::CoorManager | |
| DeleteAllResidues() | mmdb::CoorManager | |
| DeleteAllSelections() | mmdb::SelManager | |
| DeleteAltLocs() | mmdb::CoorManager | |
| DeleteAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, int atomNo) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, const ChainID chID, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, const ChainID chID, int resNo, int atomNo) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, int atomNo) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, int chNo, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, int chNo, int resNo, int atomNo) | mmdb::CoorManager | |
| DeleteChain(int modelNo, const ChainID chID) | mmdb::CoorManager | |
| DeleteChain(int modelNo, int chainNo) | mmdb::CoorManager | |
| DeleteModel(cpstr CID) | mmdb::CoorManager | |
| DeleteModel(int modelNo) | mmdb::CoorManager | |
| DeleteResidue(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| DeleteResidue(int modelNo, const ChainID chainID, int resNo) | mmdb::CoorManager | |
| DeleteResidue(int modelNo, int chainNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| DeleteResidue(int modelNo, int chainNo, int resNo) | mmdb::CoorManager | |
| DeleteSelection(int selHnd) | mmdb::SelManager | |
| DeleteSelObjects(int selHnd) | mmdb::SelManager | |
| DeleteSolvent() | mmdb::CoorManager | |
| enforceUniqueChID | mmdb::Root | [protected] |
| Exclude | mmdb::Root | [protected] |
| Expand(int n) | mmdb::Mask | [protected] |
| ExpandAtomArray(int inc) | mmdb::Root | [protected] |
| FindSeqSection(PAtom atom, int seqDist, int &seq1, int &seq2) | mmdb::CoorManager | [protected] |
| FinishStructEdit() | mmdb::Root | |
| Flags | mmdb::Root | [protected] |
| Footnote | mmdb::Root | [protected] |
| Frac2Orth(realtype xfrac, realtype yfrac, realtype zfrac, realtype &xorth, realtype &yorth, realtype &zorth) | mmdb::CoorManager | |
| Frac2Orth(mat44 &F, mat44 &T) | mmdb::CoorManager | |
| FreeCoordMemory() | mmdb::Root | [protected] |
| FreeFileMemory() | mmdb::Root | |
| FreeUDDMemory() | mmdb::UDData | [protected] |
| FType | mmdb::Root | [protected] |
| GenerateNCSMates() | mmdb::Root | |
| GenerateSymMates(PGenSym genSym=NULL) | mmdb::CoorManager | |
| GetAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| GetAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, int atomNo) | mmdb::CoorManager | |
| GetAtom(int modelNo, const ChainID chID, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| GetAtom(int modelNo, const ChainID chID, int resNo, int atomNo) | mmdb::CoorManager | |
| GetAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| GetAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, int atomNo) | mmdb::CoorManager | |
| GetAtom(int modelNo, int chNo, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| GetAtom(int modelNo, int chNo, int resNo, int atomNo) | mmdb::CoorManager | |
| GetAtom(cpstr CID) | mmdb::CoorManager | |
| GetAtomArray() | mmdb::Root | [inline] |
| GetAtomArrayLength() | mmdb::Root | [inline] |
| GetAtomI(int index) | mmdb::Root | |
| GetAtomStatistics(int selHnd, RAtomStat AS) | mmdb::SelManager | |
| mmdb::CoorManager::GetAtomStatistics(RAtomStat AS) | mmdb::Root | |
| GetAtomTable(PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(int modelNo, int chainNo, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(int modelNo, const ChainID chainID, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(int modelNo, int chainNo, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(cpstr CID, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(int modelNo, int chainNo, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(int modelNo, const ChainID chainID, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(int modelNo, int chainNo, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(cpstr CID, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetBiomolecule(int bmNo) | mmdb::Manager | |
| GetBiomolecules(PPBiomolecule &BM, int &nBMs) | mmdb::Manager | |
| GetBrick(int nx, int ny, int nz) | mmdb::CoorManager | |
| GetBrickCoor(PAtom A, int &nx, int &ny, int &nz) | mmdb::CoorManager | |
| GetBrickCoor(realtype x, realtype y, realtype z, int &nx, int &ny, int &nz) | mmdb::CoorManager | |
| GetBrickDimension(int &nxmax, int &nymax, int &nzmax) | mmdb::CoorManager | |
| GetCell(realtype &cell_a, realtype &cell_b, realtype &cell_c, realtype &cell_alpha, realtype &cell_beta, realtype &cell_gamma, realtype &vol, int &OrthCode) | mmdb::Root | |
| GetChain(int modelNo, const ChainID chainID) | mmdb::CoorManager | |
| GetChain(int modelNo, int chainNo) | mmdb::CoorManager | |
| GetChain(cpstr CID) | mmdb::CoorManager | |
| GetChainTable(int modelNo, PPChain &chainTable, int &NumberOfChains) | mmdb::CoorManager | |
| GetChainTable(cpstr CID, PPChain &chainTable, int &NumberOfChains) | mmdb::CoorManager | |
| GetCrystData() | mmdb::Root | [inline] |
| GetEntryID() | mmdb::Root | |
| GetExpDataRec(int recNo) | mmdb::Root | |
| GetFileType() | mmdb::Root | [inline] |
| GetFirstDefinedModel() | mmdb::CoorManager | |
| GetFirstModelNum() | mmdb::CoorManager | |
| GetFractMatrix(mat44 &TMatrix, int Nop, int cellshift_a, int cellshift_b, int cellshift_c) | mmdb::Root | |
| GetInputBuffer(pstr Line, int &count) | mmdb::Root | |
| GetJournal() | mmdb::Manager | |
| getLength() | mmdb::Mask | [inline] |
| GetMBrick(int nx, int ny, int nz) | mmdb::CoorManager | |
| GetMBrickCoor(PAtom A, int &nx, int &ny, int &nz) | mmdb::CoorManager | |
| GetMBrickCoor(realtype x, realtype y, realtype z, int &nx, int &ny, int &nz) | mmdb::CoorManager | |
| GetMBrickDimension(int &nxmax, int &nymax, int &nzmax) | mmdb::CoorManager | |
| GetMdlTypeRec(int recNo) | mmdb::Root | |
| GetModel(int modelNo) | mmdb::CoorManager | |
| GetModel(cpstr CID) | mmdb::CoorManager | |
| GetModelTable(PPModel &modTable, int &NumberOfModels) | mmdb::CoorManager | |
| GetNCSMatrix(int NCSMatrixNo, mat44 &ncs_m, int &iGiven) | mmdb::Root | |
| GetNewChainID(int modelNo, ChainID chID, int length=1) | mmdb::Root | |
| GetNofBiomolecules() | mmdb::Manager | |
| GetNofExpDataRecs() | mmdb::Root | |
| getNofIUData() | mmdb::UDData | [protected] |
| GetNofMdlTypeRecs() | mmdb::Root | |
| getNofRUData() | mmdb::UDData | [protected] |
| getNofSUData() | mmdb::UDData | [protected] |
| GetNumberOfAtoms() | mmdb::CoorManager | [inline] |
| GetNumberOfAtoms(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetNumberOfAtoms(int modelNo, int chainNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetNumberOfAtoms(int modelNo, const ChainID chainID, int resNo) | mmdb::CoorManager | |
| GetNumberOfAtoms(int modelNo, int chainNo, int resNo) | mmdb::CoorManager | |
| GetNumberOfAtoms(cpstr CID) | mmdb::CoorManager | |
| GetNumberOfChains(int modelNo) | mmdb::CoorManager | |
| GetNumberOfChains(cpstr CID) | mmdb::CoorManager | |
| GetNumberOfModels() | mmdb::CoorManager | [inline] |
| GetNumberOfNCSMates() | mmdb::Root | |
| GetNumberOfNCSMatrices() | mmdb::Root | |
| GetNumberOfResidues(int modelNo, const ChainID chainID) | mmdb::CoorManager | |
| GetNumberOfResidues(int modelNo, int chainNo) | mmdb::CoorManager | |
| GetNumberOfResidues(cpstr CID) | mmdb::CoorManager | |
| GetNumberOfSymOps() | mmdb::Root | |
| GetRCell(realtype &cell_as, realtype &cell_bs, realtype &cell_cs, realtype &cell_alphas, realtype &cell_betas, realtype &cell_gammas, realtype &vols, int &OrthCode) | mmdb::Root | |
| GetRemarks() | mmdb::Manager | |
| GetResidue(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetResidue(int modelNo, int chainNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetResidue(int modelNo, const ChainID chainID, int resNo) | mmdb::CoorManager | |
| GetResidue(int modelNo, int chainNo, int resNo) | mmdb::CoorManager | |
| GetResidue(cpstr CID) | mmdb::CoorManager | |
| GetResidueNo(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetResidueNo(int modelNo, int chainNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetResidueTable(PPResidue &resTable, int &NumberOfResidues) | mmdb::CoorManager | |
| GetResidueTable(int modelNo, const ChainID chainID, PPResidue &resTable, int &NumberOfResidues) | mmdb::CoorManager | |
| GetResidueTable(int modelNo, int chainNo, PPResidue &resTable, int &NumberOfResidues) | mmdb::CoorManager | |
| GetResidueTable(cpstr CID, PPResidue &resTable, int &NumberOfResidues) | mmdb::CoorManager | |
| GetResolution() | mmdb::Manager | |
| GetROMatrix(mat44 &RO) | mmdb::Root | |
| GetSelIndex(int selHnd, PPAtom &SelAtom, int &nSelAtoms) | mmdb::SelManager | |
| GetSelIndex(int selHnd, PPResidue &SelResidues, int &nSelResidues) | mmdb::SelManager | |
| GetSelIndex(int selHnd, PPChain &SelChains, int &nSelChains) | mmdb::SelManager | |
| GetSelIndex(int selHnd, PPModel &SelModels, int &nSelModels) | mmdb::SelManager | |
| GetSelLength(int selHnd) | mmdb::SelManager | |
| GetSelMask(int selHnd) | mmdb::SelManager | [protected, virtual] |
| GetSelType(int selHnd) | mmdb::SelManager | |
| GetSpaceGroup() | mmdb::Root | |
| GetSpaceGroupFix() | mmdb::Root | |
| GetStructureTitle(pstr &L) | mmdb::Root | |
| GetSyminfoLib() | mmdb::Root | |
| GetSymOp(int Nop) | mmdb::Root | |
| GetSymOpMatrix(mat44 &TMatrix, int Nop) | mmdb::Root | |
| GetTMatrix(mat44 &TMatrix, int Nop, int cellshift_a, int cellshift_b, int cellshift_c) | mmdb::Root | |
| GetUCTMatrix(mat44 &TMatrix, int Nop, realtype x, realtype y, realtype z, int cellshift_a, int cellshift_b, int cellshift_c) | mmdb::Root | |
| GetUDData(int UDDhandle, int &iudd) | mmdb::Root | |
| GetUDData(int UDDhandle, realtype &rudd) | mmdb::Root | |
| GetUDData(int UDDhandle, pstr sudd, int maxLen) | mmdb::Root | |
| GetUDData(int UDDhandle, pstr &sudd) | mmdb::Root | |
| getUDData(int UDDhandle, int &iudd) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, realtype &rudd) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, pstr sudd, int maxLen) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, int *retcode=NULL) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, pstr &sudd) | mmdb::UDData | [protected] |
| GetUDDHandle(UDR_TYPE udr_type, cpstr UDDataID) | mmdb::Root | |
| GetUnparsedA() | mmdb::Root | [inline] |
| GetUnparsedB() | mmdb::Root | [inline] |
| GetUnparsedC() | mmdb::Root | [inline] |
| iContact(PAtom a1, PAtom a2, int seq1, int seq2, realtype dd, realtype d12, realtype d22, realtype &d2) | mmdb::CoorManager | [protected] |
| iContact(realtype x, realtype y, realtype z, PAtom a2, realtype dd, realtype d12, realtype d22, realtype &d2) | mmdb::CoorManager | [protected] |
| ignoreRemarks | mmdb::Root | [protected] |
| InitMask() | mmdb::Mask | [protected] |
| InitMMDBCoorManager() | mmdb::CoorManager | [protected] |
| InitMMDBRoot() | mmdb::Root | [protected] |
| InitSelManager() | mmdb::SelManager | [protected] |
| InitUDData() | mmdb::UDData | [protected] |
| InsModel(PModel mdl, int modelNo) | mmdb::CoorManager | |
| isCellInfo() | mmdb::Root | |
| isCrystInfo() | mmdb::Root | |
| isMask() | mmdb::Mask | |
| isNCSMatrix() | mmdb::Root | |
| isScaleMatrix() | mmdb::Root | |
| isSpaceGroup() | mmdb::Root | |
| isTransfMatrix() | mmdb::Root | |
| IUData | mmdb::UDData | [protected] |
| lcount | mmdb::Root | [protected] |
| m | mmdb::Mask | [protected] |
| MakeAllSelIndexes() | mmdb::SelManager | |
| MakeBiomolecule(int bmNo, int modelNo=1) | mmdb::Manager | |
| MakeBonds(bool calc_only) | mmdb::BondManager | |
| MakeBricks(PPAtom atmvec, int avlen, realtype Margin, realtype BrickSize=6.0) | mmdb::CoorManager | |
| MakeHetAtoms(cpstr chainID, bool Make) | mmdb::Root | |
| MakeMBricks(PPAtom *atmvec, ivector avlen, int nStructures, realtype Margin, realtype BrickSize=6.0) | mmdb::CoorManager | |
| MakeSelIndex(int selHnd) | mmdb::SelManager | |
| MakeSelIndex(int selHnd, SELECTION_TYPE sType, int nsel) | mmdb::SelManager | [protected] |
| Manager() | mmdb::Manager | |
| Manager(io::RPStream Object) | mmdb::Manager | |
| Mask() | mmdb::Mask | |
| Mask(io::RPStream Object) | mmdb::Mask | |
| mask | mmdb::SelManager | [protected] |
| mbrick | mmdb::CoorManager | [protected] |
| mbrick_size | mmdb::CoorManager | [protected] |
| mlen | mmdb::Mask | [protected] |
| model | mmdb::Root | [protected] |
| nAtoms | mmdb::Root | [protected] |
| nbrick_x | mmdb::CoorManager | [protected] |
| nbrick_y | mmdb::CoorManager | [protected] |
| nbrick_z | mmdb::CoorManager | [protected] |
| NegMask() | mmdb::Mask | |
| NewMask(PPMask Mask, int nMasks) | mmdb::Mask | |
| NewSelection() | mmdb::SelManager | |
| nmbrick_x | mmdb::CoorManager | [protected] |
| nmbrick_y | mmdb::CoorManager | [protected] |
| nmbrick_z | mmdb::CoorManager | [protected] |
| nModels | mmdb::Root | [protected] |
| nSelections | mmdb::SelManager | [protected] |
| nSelItems | mmdb::SelManager | [protected] |
| Orth2Frac(realtype xorth, realtype yorth, realtype zorth, realtype &xfrac, realtype &yfrac, realtype &zfrac) | mmdb::CoorManager | |
| Orth2Frac(mat44 &T, mat44 &F) | mmdb::CoorManager | |
| ParseBiomolecules() | mmdb::Manager | |
| PDBCleanup(word CleanKey) | mmdb::Root | |
| Print(pstr S) | mmdb::Mask | |
| PutAtom(int index, int serNum, const AtomName atomName, const ResName resName, const ChainID chainID, int seqNum, const InsCode insCode, const AltLoc altLoc, const SegID segID, const Element element) | mmdb::Root | |
| PutAtom(int index, PAtom A, int serNum=0) | mmdb::Root | |
| PutCell(realtype cell_a, realtype cell_b, realtype cell_c, realtype cell_alpha, realtype cell_beta, realtype cell_gamma, int OrthCode=0) | mmdb::Root | |
| PutPDBString(cpstr PDBString) | mmdb::Root | |
| PutUDData(int UDDhandle, int iudd) | mmdb::Root | |
| PutUDData(int UDDhandle, realtype rudd) | mmdb::Root | |
| PutUDData(int UDDhandle, cpstr sudd) | mmdb::Root | |
| putUDData(int UDDhandle, int iudd) | mmdb::UDData | [protected] |
| putUDData(int UDDhandle, realtype rudd) | mmdb::UDData | [protected] |
| putUDData(int UDDhandle, cpstr sudd) | mmdb::UDData | [protected] |
| read(io::RFile f) | mmdb::Manager | [protected] |
| mmdb::io::Stream::read(RFile) | mmdb::io::Stream | [inline, virtual] |
| ReadCIFASCII(cpstr CIFFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadCIFASCII(io::RFile f) | mmdb::Root | |
| ReadCIFASCII1(cpstr CIFLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadCIFAtom(mmcif::PData CIFD) | mmdb::Root | [protected] |
| ReadCoorFile(cpstr LFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadCoorFile(io::RFile f) | mmdb::Root | |
| ReadCoorFile1(cpstr CFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadFromCIF(mmcif::PData CIFD) | mmdb::Root | |
| ReadMMDBF(cpstr MMDBRootName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadMMDBF(io::RFile f) | mmdb::Root | |
| ReadMMDBF1(cpstr MMDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadPDBASCII(cpstr PDBFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadPDBASCII(io::RFile f) | mmdb::Root | |
| ReadPDBASCII1(cpstr PDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadPDBAtom(cpstr L) | mmdb::Root | [protected] |
| ReadPDBLine(io::RFile f, pstr L, int maxlen) | mmdb::Root | [protected] |
| RegisterUDInteger(UDR_TYPE udr_type, cpstr UDDataID) | mmdb::Root | |
| RegisterUDReal(UDR_TYPE udr_type, cpstr UDDataID) | mmdb::Root | |
| RegisterUDString(UDR_TYPE udr_type, cpstr UDDataID) | mmdb::Root | |
| RemoveAtom(int index) | mmdb::Root | |
| RemoveBonds() | mmdb::BondManager | |
| RemoveBricks() | mmdb::CoorManager | |
| RemoveFlag(word Flag) | mmdb::Root | |
| RemoveMask(PMask Mask) | mmdb::Mask | |
| RemoveMBricks() | mmdb::CoorManager | |
| ResetManager() | mmdb::SelManager | [protected, virtual] |
| Root() | mmdb::Root | |
| Root(io::RPStream Object) | mmdb::Root | |
| RotateModels(int modelNo1, int modelNo2, int rotdir) | mmdb::CoorManager | |
| RUData | mmdb::UDData | [protected] |
| S | mmdb::Root | [protected] |
| SA | mmdb::Root | [protected] |
| SB | mmdb::Root | [protected] |
| SC | mmdb::Root | [protected] |
| SeekContacts(PPAtom AIndex, int ilen, int atomNum, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, long group=0) | mmdb::CoorManager | |
| SeekContacts(PAtom A, PPAtom AIndex, int ilen, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, long group=0) | mmdb::CoorManager | |
| SeekContacts(PPAtom AIndex1, int ilen1, PPAtom AIndex2, int ilen2, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, mat44 *TMatrix=NULL, long group=0, int bricking=0, bool doSqrt=true) | mmdb::CoorManager | |
| SeekContacts(PPAtom AIndex1, int ilen1, PPAtom AIndex2, int ilen2, realtype contDist, PContact contact, int &ncontacts, int bricking=0) | mmdb::CoorManager | |
| SeekContacts(PPAtom AIndex1, int ilen1, PPAtom *AIndex2, ivector ilen2, int nStructures, realtype dist1, realtype dist2, PPMContact &contact, int bricking=0) | mmdb::CoorManager | |
| Select(int selHnd, SELECTION_TYPE sType, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, cpstr Segments, cpstr Charges, realtype occ1, realtype occ2, realtype x0, realtype y0, realtype z0, realtype d0, SELECTION_KEY sKey=SKEY_OR) | mmdb::SelManager | |
| Select(int selHnd, SELECTION_TYPE sType, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, SELECTION_KEY sKey=SKEY_OR) | mmdb::SelManager | |
| Select(int selHnd, SELECTION_TYPE sType, cpstr CID, SELECTION_KEY sKey) | mmdb::SelManager | |
| Select(int selHnd1, SELECTION_TYPE sType, int selHnd2, SELECTION_KEY sKey=SKEY_OR) | mmdb::SelManager | |
| SelectAtom(int selHnd, PAtom A, SELECTION_KEY selKey=SKEY_OR, bool makeIndex=true) | mmdb::SelManager | |
| SelectAtom(PAtom atm, int maskNo, SELECTION_KEY sKey, int &nsel) | mmdb::SelManager | [protected] |
| SelectAtoms(int selHnd, int iSer1, int iSer2, SELECTION_KEY selKey=SKEY_OR) | mmdb::SelManager | |
| SelectAtoms(int selHnd, ivector asn, int nsn, SELECTION_KEY selKey=SKEY_OR) | mmdb::SelManager | |
| SelectAtoms(int selHnd, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, cpstr Segments, cpstr Charges, realtype occ1, realtype occ2, realtype x0, realtype y0, realtype z0, realtype d0, SELECTION_KEY selKey=SKEY_OR) | mmdb::SelManager | |
| SelectAtoms(int selHnd, int iModel, cpstr Chains, int ResNo1, cpstr Ins1, int ResNo2, cpstr Ins2, cpstr RNames, cpstr ANames, cpstr Elements, cpstr altLocs, SELECTION_KEY selKey=SKEY_OR) | mmdb::SelManager | |
| SelectChain(int selHnd, PChain chain, SELECTION_TYPE sType, SELECTION_KEY sKey, bool makeIndex) | mmdb::SelManager | |
| SelectCylinder(int selHnd, SELECTION_TYPE sType, realtype x1, realtype y1, realtype z1, realtype x2, realtype y2, realtype z2, realtype r, SELECTION_KEY sKey=SKEY_OR) | mmdb::SelManager | |
| SelectDomain(int selHnd, cpstr domainRange, SELECTION_TYPE sType, SELECTION_KEY sKey, int modelNo=1) | mmdb::SelManager | |
| selection | mmdb::SelManager | [protected] |
| SelectModel(int selHnd, PModel mdl, SELECTION_TYPE sType, SELECTION_KEY sKey, bool makeIndex) | mmdb::SelManager | |
| SelectNeighbours(int selHnd, SELECTION_TYPE sType, PPAtom sA, int alen, realtype d1, realtype d2, SELECTION_KEY sKey=SKEY_OR) | mmdb::SelManager | |
| SelectObject(SELECTION_TYPE sType, PAtom atm, int maskNo, SELECTION_KEY sKey, int &nsel) | mmdb::SelManager | [protected] |
| SelectObject(PMask object, int maskNo, SELECTION_KEY sKey, int &nsel) | mmdb::SelManager | [protected] |
| SelectProperty(int selHnd, SELECTION_PROPERTY propKey, SELECTION_TYPE sType, SELECTION_KEY sKey) | mmdb::SelManager | |
| SelectResidue(int selHnd, PResidue Res, SELECTION_TYPE sType, SELECTION_KEY sKey, bool makeIndex) | mmdb::SelManager | |
| SelectSlab(int selHnd, SELECTION_TYPE sType, realtype a, realtype b, realtype c, realtype d, realtype r, SELECTION_KEY sKey=SKEY_OR) | mmdb::SelManager | |
| SelectSphere(int selHnd, SELECTION_TYPE sType, realtype x, realtype y, realtype z, realtype r, SELECTION_KEY sKey=SKEY_OR) | mmdb::SelManager | |
| SelectUDD(int selHnd, SELECTION_TYPE sType, int UDDhandle, int selMin, int selMax, SELECTION_KEY sKey) | mmdb::SelManager | |
| SelectUDD(int selHnd, SELECTION_TYPE sType, int UDDhandle, realtype selMin, realtype selMax, SELECTION_KEY sKey) | mmdb::SelManager | |
| SelectUDD(int selHnd, SELECTION_TYPE sType, int UDDhandle, cpstr selStr, int cmpRule, SELECTION_KEY sKey) | mmdb::SelManager | |
| SelManager() | mmdb::SelManager | |
| SelManager(io::RPStream Object) | mmdb::SelManager | |
| SelMask(PMask Mask) | mmdb::Mask | |
| selType | mmdb::SelManager | [protected] |
| SetCell(realtype cell_a, realtype cell_b, realtype cell_c, realtype cell_alpha, realtype cell_beta, realtype cell_gamma, int OrthCode=0) | mmdb::Root | |
| SetDefaultCoorID(cpstr CID) | mmdb::CoorManager | |
| SetEntryID(const IDCode idCode) | mmdb::Root | |
| SetFlag(word Flag) | mmdb::Root | |
| SetIgnoreSCALEi(bool ignoreScalei) | mmdb::Root | |
| SetMask(PMask Mask) | mmdb::Mask | |
| SetMaskBit(int BitNo) | mmdb::Mask | |
| setNofSUData(int newN) | mmdb::UDData | [protected] |
| SetShortBinary() | mmdb::Root | |
| SetSpaceGroup(cpstr spGroup) | mmdb::Root | |
| SetSyminfoLib(cpstr syminfo_lib) | mmdb::Root | |
| Stream() | mmdb::io::Stream | [inline] |
| Stream(RPStream) | mmdb::io::Stream | [inline] |
| SUData | mmdb::UDData | [protected] |
| SwapModels(int modelNo1, int modelNo2) | mmdb::CoorManager | |
| SwitchModel(cpstr L) | mmdb::Root | [protected] |
| SwitchModel(int nM) | mmdb::Root | [protected] |
| title | mmdb::Root | [protected] |
| TrimModelTable() | mmdb::Root | |
| UDData() | mmdb::UDData | |
| UDData(io::RPStream Object) | mmdb::UDData | |
| udRegister | mmdb::Root | [protected] |
| UnselectAtoms(int selHnd, int iSer1, int iSer2) | mmdb::SelManager | |
| write(io::RFile f) | mmdb::Manager | [protected] |
| mmdb::io::Stream::write(RFile) | mmdb::io::Stream | [inline, virtual] |
| WriteCIFASCII(cpstr CIFFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WriteCIFASCII1(cpstr CIFLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WriteMMDBF(cpstr MMDBRootName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WriteMMDBF1(cpstr MMDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WritePDBASCII(cpstr PDBFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WritePDBASCII(io::RFile f) | mmdb::Root | |
| WritePDBASCII1(cpstr PDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| XadMask(PMask Mask) | mmdb::Mask | |
| xbrick_0 | mmdb::CoorManager | [protected] |
| xmbrick_0 | mmdb::CoorManager | [protected] |
| ybrick_0 | mmdb::CoorManager | [protected] |
| ymbrick_0 | mmdb::CoorManager | [protected] |
| zbrick_0 | mmdb::CoorManager | [protected] |
| zmbrick_0 | mmdb::CoorManager | [protected] |
| ~BondManager() | mmdb::BondManager | |
| ~CoorManager() | mmdb::CoorManager | |
| ~Manager() | mmdb::Manager | |
| ~Mask() | mmdb::Mask | |
| ~Root() | mmdb::Root | |
| ~SelManager() | mmdb::SelManager | |
| ~Stream() | mmdb::io::Stream | [inline, virtual] |
| ~UDData() | mmdb::UDData | |
1.7.2
