, including all inherited members.
| _ExcludeModel(int serNum) | mmdb::Root | [protected] |
| AddAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, PAtom atom) | mmdb::CoorManager | |
| AddAtom(int modelNo, const ChainID chID, int resNo, PAtom atom) | mmdb::CoorManager | |
| AddAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, PAtom atom) | mmdb::CoorManager | |
| AddAtom(int modelNo, int chNo, int resNo, PAtom atom) | mmdb::CoorManager | |
| AddAtomArray(int inc) | mmdb::Root | [protected] |
| AddChain(int modelNo, PChain chain) | mmdb::CoorManager | |
| AddModel(PModel mdl) | mmdb::CoorManager | |
| AddNCSMatrix(mat33 &ncs_m, vect3 &ncs_v, int iGiven) | mmdb::Root | |
| AddPDBASCII(cpstr PDBFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| AddPDBASCII1(cpstr PDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| AddResidue(int modelNo, const ChainID chainID, PResidue res) | mmdb::CoorManager | |
| AddResidue(int modelNo, int chainNo, PResidue res) | mmdb::CoorManager | |
| AllocateAtom(int index, const ChainID chainID, const ChainID label_asym_id, const ResName resName, const ResName label_comp_id, int seqNum, int label_seq_id, int label_entity_id, const InsCode insCode, bool Replace) | mmdb::Root | [protected] |
| allowDuplChID | mmdb::Root | [protected] |
| ApplyNCSTransform(int NCSMatrixNo) | mmdb::Root | [protected] |
| ApplySymTransform(int SymMatrixNo, PGenSym genSym=NULL) | mmdb::CoorManager | [protected] |
| ApplyTransform(mat44 &TMatrix) | mmdb::CoorManager | |
| areBricks() | mmdb::CoorManager | [inline] |
| areMBricks() | mmdb::CoorManager | [inline] |
| atmLen | mmdb::Root | [protected] |
| atom | mmdb::Root | [protected] |
| brick | mmdb::CoorManager | [protected] |
| brick_size | mmdb::CoorManager | [protected] |
| BringToUnitCell() | mmdb::CoorManager | |
| CheckAtomPlace(int index, cpstr L) | mmdb::Root | [protected] |
| CheckAtomPlace(int index, mmcif::PLoop Loop) | mmdb::Root | [protected] |
| CheckInAtom(int index, PAtom A) | mmdb::Root | [protected] |
| CheckInAtoms(int index, PPAtom A, int natms) | mmdb::Root | [protected] |
| CheckMask(PMask Mask) | mmdb::Mask | |
| CIF | mmdb::Root | [protected] |
| ClearMask() | mmdb::Mask | |
| CoorIDCode | mmdb::CoorManager | |
| CoorManager() | mmdb::CoorManager | |
| CoorManager(io::RPStream Object) | mmdb::CoorManager | |
| Copy(PRoot MMDBRoot) | mmdb::Root | |
| CopyMask(PMask Mask) | mmdb::Mask | |
| crChain | mmdb::Root | [protected] |
| crModel | mmdb::Root | [protected] |
| crRes | mmdb::Root | [protected] |
| cryst | mmdb::Root | [protected] |
| CrystReady() | mmdb::Root | |
| DefPath | mmdb::Root | [protected] |
| DeleteAllAtoms(int modelNo, const ChainID chID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, const ChainID chID, int resNo) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, const ChainID chID) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, int chNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, int chNo, int resNo) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo, int chNo) | mmdb::CoorManager | |
| DeleteAllAtoms(int modelNo) | mmdb::CoorManager | |
| DeleteAllAtoms() | mmdb::CoorManager | |
| DeleteAllChains(int modelNo) | mmdb::CoorManager | |
| DeleteAllChains() | mmdb::CoorManager | |
| DeleteAllModels() | mmdb::Root | |
| DeleteAllResidues(int modelNo, const ChainID chainID) | mmdb::CoorManager | |
| DeleteAllResidues(int modelNo, int chainNo) | mmdb::CoorManager | |
| DeleteAllResidues(int modelNo) | mmdb::CoorManager | |
| DeleteAllResidues() | mmdb::CoorManager | |
| DeleteAltLocs() | mmdb::CoorManager | |
| DeleteAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, int atomNo) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, const ChainID chID, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, const ChainID chID, int resNo, int atomNo) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, int atomNo) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, int chNo, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| DeleteAtom(int modelNo, int chNo, int resNo, int atomNo) | mmdb::CoorManager | |
| DeleteChain(int modelNo, const ChainID chID) | mmdb::CoorManager | |
| DeleteChain(int modelNo, int chainNo) | mmdb::CoorManager | |
| DeleteModel(cpstr CID) | mmdb::CoorManager | |
| DeleteModel(int modelNo) | mmdb::CoorManager | |
| DeleteResidue(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| DeleteResidue(int modelNo, const ChainID chainID, int resNo) | mmdb::CoorManager | |
| DeleteResidue(int modelNo, int chainNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| DeleteResidue(int modelNo, int chainNo, int resNo) | mmdb::CoorManager | |
| DeleteSolvent() | mmdb::CoorManager | |
| enforceUniqueChID | mmdb::Root | [protected] |
| Exclude | mmdb::Root | [protected] |
| Expand(int n) | mmdb::Mask | [protected] |
| ExpandAtomArray(int inc) | mmdb::Root | [protected] |
| FindSeqSection(PAtom atom, int seqDist, int &seq1, int &seq2) | mmdb::CoorManager | [protected] |
| FinishStructEdit() | mmdb::Root | |
| Flags | mmdb::Root | [protected] |
| Footnote | mmdb::Root | [protected] |
| Frac2Orth(realtype xfrac, realtype yfrac, realtype zfrac, realtype &xorth, realtype &yorth, realtype &zorth) | mmdb::CoorManager | |
| Frac2Orth(mat44 &F, mat44 &T) | mmdb::CoorManager | |
| FreeCoordMemory() | mmdb::Root | [protected] |
| FreeFileMemory() | mmdb::Root | |
| FreeUDDMemory() | mmdb::UDData | [protected] |
| FType | mmdb::Root | [protected] |
| GenerateNCSMates() | mmdb::Root | |
| GenerateSymMates(PGenSym genSym=NULL) | mmdb::CoorManager | |
| GetAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| GetAtom(int modelNo, const ChainID chID, int seqNo, const InsCode insCode, int atomNo) | mmdb::CoorManager | |
| GetAtom(int modelNo, const ChainID chID, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| GetAtom(int modelNo, const ChainID chID, int resNo, int atomNo) | mmdb::CoorManager | |
| GetAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| GetAtom(int modelNo, int chNo, int seqNo, const InsCode insCode, int atomNo) | mmdb::CoorManager | |
| GetAtom(int modelNo, int chNo, int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc) | mmdb::CoorManager | |
| GetAtom(int modelNo, int chNo, int resNo, int atomNo) | mmdb::CoorManager | |
| GetAtom(cpstr CID) | mmdb::CoorManager | |
| GetAtomArray() | mmdb::Root | [inline] |
| GetAtomArrayLength() | mmdb::Root | [inline] |
| GetAtomI(int index) | mmdb::Root | |
| GetAtomStatistics(RAtomStat AS) | mmdb::Root | |
| GetAtomTable(PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(int modelNo, int chainNo, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(int modelNo, const ChainID chainID, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(int modelNo, int chainNo, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable(cpstr CID, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(int modelNo, int chainNo, int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(int modelNo, const ChainID chainID, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(int modelNo, int chainNo, int resNo, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetAtomTable1(cpstr CID, PPAtom &atomTable, int &NumberOfAtoms) | mmdb::CoorManager | |
| GetBrick(int nx, int ny, int nz) | mmdb::CoorManager | |
| GetBrickCoor(PAtom A, int &nx, int &ny, int &nz) | mmdb::CoorManager | |
| GetBrickCoor(realtype x, realtype y, realtype z, int &nx, int &ny, int &nz) | mmdb::CoorManager | |
| GetBrickDimension(int &nxmax, int &nymax, int &nzmax) | mmdb::CoorManager | |
| GetCell(realtype &cell_a, realtype &cell_b, realtype &cell_c, realtype &cell_alpha, realtype &cell_beta, realtype &cell_gamma, realtype &vol, int &OrthCode) | mmdb::Root | |
| GetChain(int modelNo, const ChainID chainID) | mmdb::CoorManager | |
| GetChain(int modelNo, int chainNo) | mmdb::CoorManager | |
| GetChain(cpstr CID) | mmdb::CoorManager | |
| GetChainTable(int modelNo, PPChain &chainTable, int &NumberOfChains) | mmdb::CoorManager | |
| GetChainTable(cpstr CID, PPChain &chainTable, int &NumberOfChains) | mmdb::CoorManager | |
| GetCrystData() | mmdb::Root | [inline] |
| GetEntryID() | mmdb::Root | |
| GetExpDataRec(int recNo) | mmdb::Root | |
| GetFileType() | mmdb::Root | [inline] |
| GetFirstDefinedModel() | mmdb::CoorManager | |
| GetFirstModelNum() | mmdb::CoorManager | |
| GetFractMatrix(mat44 &TMatrix, int Nop, int cellshift_a, int cellshift_b, int cellshift_c) | mmdb::Root | |
| GetInputBuffer(pstr Line, int &count) | mmdb::Root | |
| getLength() | mmdb::Mask | [inline] |
| GetMBrick(int nx, int ny, int nz) | mmdb::CoorManager | |
| GetMBrickCoor(PAtom A, int &nx, int &ny, int &nz) | mmdb::CoorManager | |
| GetMBrickCoor(realtype x, realtype y, realtype z, int &nx, int &ny, int &nz) | mmdb::CoorManager | |
| GetMBrickDimension(int &nxmax, int &nymax, int &nzmax) | mmdb::CoorManager | |
| GetMdlTypeRec(int recNo) | mmdb::Root | |
| GetModel(int modelNo) | mmdb::CoorManager | |
| GetModel(cpstr CID) | mmdb::CoorManager | |
| GetModelTable(PPModel &modTable, int &NumberOfModels) | mmdb::CoorManager | |
| GetNCSMatrix(int NCSMatrixNo, mat44 &ncs_m, int &iGiven) | mmdb::Root | |
| GetNewChainID(int modelNo, ChainID chID, int length=1) | mmdb::Root | |
| GetNofExpDataRecs() | mmdb::Root | |
| getNofIUData() | mmdb::UDData | [protected] |
| GetNofMdlTypeRecs() | mmdb::Root | |
| getNofRUData() | mmdb::UDData | [protected] |
| getNofSUData() | mmdb::UDData | [protected] |
| GetNumberOfAtoms() | mmdb::CoorManager | [inline] |
| GetNumberOfAtoms(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetNumberOfAtoms(int modelNo, int chainNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetNumberOfAtoms(int modelNo, const ChainID chainID, int resNo) | mmdb::CoorManager | |
| GetNumberOfAtoms(int modelNo, int chainNo, int resNo) | mmdb::CoorManager | |
| GetNumberOfAtoms(cpstr CID) | mmdb::CoorManager | |
| GetNumberOfChains(int modelNo) | mmdb::CoorManager | |
| GetNumberOfChains(cpstr CID) | mmdb::CoorManager | |
| GetNumberOfModels() | mmdb::CoorManager | [inline] |
| GetNumberOfNCSMates() | mmdb::Root | |
| GetNumberOfNCSMatrices() | mmdb::Root | |
| GetNumberOfResidues(int modelNo, const ChainID chainID) | mmdb::CoorManager | |
| GetNumberOfResidues(int modelNo, int chainNo) | mmdb::CoorManager | |
| GetNumberOfResidues(cpstr CID) | mmdb::CoorManager | |
| GetNumberOfSymOps() | mmdb::Root | |
| GetRCell(realtype &cell_as, realtype &cell_bs, realtype &cell_cs, realtype &cell_alphas, realtype &cell_betas, realtype &cell_gammas, realtype &vols, int &OrthCode) | mmdb::Root | |
| GetResidue(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetResidue(int modelNo, int chainNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetResidue(int modelNo, const ChainID chainID, int resNo) | mmdb::CoorManager | |
| GetResidue(int modelNo, int chainNo, int resNo) | mmdb::CoorManager | |
| GetResidue(cpstr CID) | mmdb::CoorManager | |
| GetResidueNo(int modelNo, const ChainID chainID, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetResidueNo(int modelNo, int chainNo, int seqNo, const InsCode insCode) | mmdb::CoorManager | |
| GetResidueTable(PPResidue &resTable, int &NumberOfResidues) | mmdb::CoorManager | |
| GetResidueTable(int modelNo, const ChainID chainID, PPResidue &resTable, int &NumberOfResidues) | mmdb::CoorManager | |
| GetResidueTable(int modelNo, int chainNo, PPResidue &resTable, int &NumberOfResidues) | mmdb::CoorManager | |
| GetResidueTable(cpstr CID, PPResidue &resTable, int &NumberOfResidues) | mmdb::CoorManager | |
| GetROMatrix(mat44 &RO) | mmdb::Root | |
| GetSelMask(int selHnd) | mmdb::Root | [protected, virtual] |
| GetSpaceGroup() | mmdb::Root | |
| GetSpaceGroupFix() | mmdb::Root | |
| GetStructureTitle(pstr &L) | mmdb::Root | |
| GetSyminfoLib() | mmdb::Root | |
| GetSymOp(int Nop) | mmdb::Root | |
| GetSymOpMatrix(mat44 &TMatrix, int Nop) | mmdb::Root | |
| GetTMatrix(mat44 &TMatrix, int Nop, int cellshift_a, int cellshift_b, int cellshift_c) | mmdb::Root | |
| GetUCTMatrix(mat44 &TMatrix, int Nop, realtype x, realtype y, realtype z, int cellshift_a, int cellshift_b, int cellshift_c) | mmdb::Root | |
| getUDData(int UDDhandle, int &iudd) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, realtype &rudd) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, pstr sudd, int maxLen) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, int *retcode=NULL) | mmdb::UDData | [protected] |
| getUDData(int UDDhandle, pstr &sudd) | mmdb::UDData | [protected] |
| GetUDData(int UDDhandle, int &iudd) | mmdb::Root | |
| GetUDData(int UDDhandle, realtype &rudd) | mmdb::Root | |
| GetUDData(int UDDhandle, pstr sudd, int maxLen) | mmdb::Root | |
| GetUDData(int UDDhandle, pstr &sudd) | mmdb::Root | |
| GetUDDHandle(UDR_TYPE udr_type, cpstr UDDataID) | mmdb::Root | |
| GetUnparsedA() | mmdb::Root | [inline] |
| GetUnparsedB() | mmdb::Root | [inline] |
| GetUnparsedC() | mmdb::Root | [inline] |
| iContact(PAtom a1, PAtom a2, int seq1, int seq2, realtype dd, realtype d12, realtype d22, realtype &d2) | mmdb::CoorManager | [protected] |
| iContact(realtype x, realtype y, realtype z, PAtom a2, realtype dd, realtype d12, realtype d22, realtype &d2) | mmdb::CoorManager | [protected] |
| ignoreRemarks | mmdb::Root | [protected] |
| InitMask() | mmdb::Mask | [protected] |
| InitMMDBCoorManager() | mmdb::CoorManager | [protected] |
| InitMMDBRoot() | mmdb::Root | [protected] |
| InitUDData() | mmdb::UDData | [protected] |
| InsModel(PModel mdl, int modelNo) | mmdb::CoorManager | |
| isCellInfo() | mmdb::Root | |
| isCrystInfo() | mmdb::Root | |
| isMask() | mmdb::Mask | |
| isNCSMatrix() | mmdb::Root | |
| isScaleMatrix() | mmdb::Root | |
| isSpaceGroup() | mmdb::Root | |
| isTransfMatrix() | mmdb::Root | |
| IUData | mmdb::UDData | [protected] |
| lcount | mmdb::Root | [protected] |
| m | mmdb::Mask | [protected] |
| MakeBricks(PPAtom atmvec, int avlen, realtype Margin, realtype BrickSize=6.0) | mmdb::CoorManager | |
| MakeHetAtoms(cpstr chainID, bool Make) | mmdb::Root | |
| MakeMBricks(PPAtom *atmvec, ivector avlen, int nStructures, realtype Margin, realtype BrickSize=6.0) | mmdb::CoorManager | |
| Mask() | mmdb::Mask | |
| Mask(io::RPStream Object) | mmdb::Mask | |
| mbrick | mmdb::CoorManager | [protected] |
| mbrick_size | mmdb::CoorManager | [protected] |
| mlen | mmdb::Mask | [protected] |
| model | mmdb::Root | [protected] |
| nAtoms | mmdb::Root | [protected] |
| nbrick_x | mmdb::CoorManager | [protected] |
| nbrick_y | mmdb::CoorManager | [protected] |
| nbrick_z | mmdb::CoorManager | [protected] |
| NegMask() | mmdb::Mask | |
| NewMask(PPMask Mask, int nMasks) | mmdb::Mask | |
| nmbrick_x | mmdb::CoorManager | [protected] |
| nmbrick_y | mmdb::CoorManager | [protected] |
| nmbrick_z | mmdb::CoorManager | [protected] |
| nModels | mmdb::Root | [protected] |
| Orth2Frac(realtype xorth, realtype yorth, realtype zorth, realtype &xfrac, realtype &yfrac, realtype &zfrac) | mmdb::CoorManager | |
| Orth2Frac(mat44 &T, mat44 &F) | mmdb::CoorManager | |
| PDBCleanup(word CleanKey) | mmdb::Root | |
| Print(pstr S) | mmdb::Mask | |
| PutAtom(int index, int serNum, const AtomName atomName, const ResName resName, const ChainID chainID, int seqNum, const InsCode insCode, const AltLoc altLoc, const SegID segID, const Element element) | mmdb::Root | |
| PutAtom(int index, PAtom A, int serNum=0) | mmdb::Root | |
| PutCell(realtype cell_a, realtype cell_b, realtype cell_c, realtype cell_alpha, realtype cell_beta, realtype cell_gamma, int OrthCode=0) | mmdb::Root | |
| PutPDBString(cpstr PDBString) | mmdb::Root | |
| putUDData(int UDDhandle, int iudd) | mmdb::UDData | [protected] |
| putUDData(int UDDhandle, realtype rudd) | mmdb::UDData | [protected] |
| putUDData(int UDDhandle, cpstr sudd) | mmdb::UDData | [protected] |
| PutUDData(int UDDhandle, int iudd) | mmdb::Root | |
| PutUDData(int UDDhandle, realtype rudd) | mmdb::Root | |
| PutUDData(int UDDhandle, cpstr sudd) | mmdb::Root | |
| read(io::RFile f) | mmdb::CoorManager | [protected] |
| mmdb::io::Stream::read(RFile) | mmdb::io::Stream | [inline, virtual] |
| ReadCIFASCII(cpstr CIFFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadCIFASCII(io::RFile f) | mmdb::Root | |
| ReadCIFASCII1(cpstr CIFLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadCIFAtom(mmcif::PData CIFD) | mmdb::Root | [protected] |
| ReadCoorFile(cpstr LFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadCoorFile(io::RFile f) | mmdb::Root | |
| ReadCoorFile1(cpstr CFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadFromCIF(mmcif::PData CIFD) | mmdb::Root | |
| ReadMMDBF(cpstr MMDBRootName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadMMDBF(io::RFile f) | mmdb::Root | |
| ReadMMDBF1(cpstr MMDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadPDBASCII(cpstr PDBFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadPDBASCII(io::RFile f) | mmdb::Root | |
| ReadPDBASCII1(cpstr PDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| ReadPDBAtom(cpstr L) | mmdb::Root | [protected] |
| ReadPDBLine(io::RFile f, pstr L, int maxlen) | mmdb::Root | [protected] |
| RegisterUDInteger(UDR_TYPE udr_type, cpstr UDDataID) | mmdb::Root | |
| RegisterUDReal(UDR_TYPE udr_type, cpstr UDDataID) | mmdb::Root | |
| RegisterUDString(UDR_TYPE udr_type, cpstr UDDataID) | mmdb::Root | |
| RemoveAtom(int index) | mmdb::Root | |
| RemoveBricks() | mmdb::CoorManager | |
| RemoveFlag(word Flag) | mmdb::Root | |
| RemoveMask(PMask Mask) | mmdb::Mask | |
| RemoveMBricks() | mmdb::CoorManager | |
| ResetManager() | mmdb::CoorManager | [protected, virtual] |
| Root() | mmdb::Root | |
| Root(io::RPStream Object) | mmdb::Root | |
| RotateModels(int modelNo1, int modelNo2, int rotdir) | mmdb::CoorManager | |
| RUData | mmdb::UDData | [protected] |
| S | mmdb::Root | [protected] |
| SA | mmdb::Root | [protected] |
| SB | mmdb::Root | [protected] |
| SC | mmdb::Root | [protected] |
| SeekContacts(PPAtom AIndex, int ilen, int atomNum, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, long group=0) | mmdb::CoorManager | |
| SeekContacts(PAtom A, PPAtom AIndex, int ilen, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, long group=0) | mmdb::CoorManager | |
| SeekContacts(PPAtom AIndex1, int ilen1, PPAtom AIndex2, int ilen2, realtype dist1, realtype dist2, int seqDist, RPContact contact, int &ncontacts, int maxlen=0, mat44 *TMatrix=NULL, long group=0, int bricking=0, bool doSqrt=true) | mmdb::CoorManager | |
| SeekContacts(PPAtom AIndex1, int ilen1, PPAtom AIndex2, int ilen2, realtype contDist, PContact contact, int &ncontacts, int bricking=0) | mmdb::CoorManager | |
| SeekContacts(PPAtom AIndex1, int ilen1, PPAtom *AIndex2, ivector ilen2, int nStructures, realtype dist1, realtype dist2, PPMContact &contact, int bricking=0) | mmdb::CoorManager | |
| SelMask(PMask Mask) | mmdb::Mask | |
| SetCell(realtype cell_a, realtype cell_b, realtype cell_c, realtype cell_alpha, realtype cell_beta, realtype cell_gamma, int OrthCode=0) | mmdb::Root | |
| SetDefaultCoorID(cpstr CID) | mmdb::CoorManager | |
| SetEntryID(const IDCode idCode) | mmdb::Root | |
| SetFlag(word Flag) | mmdb::Root | |
| SetIgnoreSCALEi(bool ignoreScalei) | mmdb::Root | |
| SetMask(PMask Mask) | mmdb::Mask | |
| SetMaskBit(int BitNo) | mmdb::Mask | |
| setNofSUData(int newN) | mmdb::UDData | [protected] |
| SetShortBinary() | mmdb::Root | |
| SetSpaceGroup(cpstr spGroup) | mmdb::Root | |
| SetSyminfoLib(cpstr syminfo_lib) | mmdb::Root | |
| Stream() | mmdb::io::Stream | [inline] |
| Stream(RPStream) | mmdb::io::Stream | [inline] |
| SUData | mmdb::UDData | [protected] |
| SwapModels(int modelNo1, int modelNo2) | mmdb::CoorManager | |
| SwitchModel(cpstr L) | mmdb::Root | [protected] |
| SwitchModel(int nM) | mmdb::Root | [protected] |
| title | mmdb::Root | [protected] |
| TrimModelTable() | mmdb::Root | |
| UDData() | mmdb::UDData | |
| UDData(io::RPStream Object) | mmdb::UDData | |
| udRegister | mmdb::Root | [protected] |
| write(io::RFile f) | mmdb::CoorManager | [protected] |
| mmdb::io::Stream::write(RFile) | mmdb::io::Stream | [inline, virtual] |
| WriteCIFASCII(cpstr CIFFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WriteCIFASCII1(cpstr CIFLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WriteMMDBF(cpstr MMDBRootName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WriteMMDBF1(cpstr MMDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WritePDBASCII(cpstr PDBFileName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| WritePDBASCII(io::RFile f) | mmdb::Root | |
| WritePDBASCII1(cpstr PDBLFName, io::GZ_MODE gzipMode=io::GZM_CHECK) | mmdb::Root | |
| XadMask(PMask Mask) | mmdb::Mask | |
| xbrick_0 | mmdb::CoorManager | [protected] |
| xmbrick_0 | mmdb::CoorManager | [protected] |
| ybrick_0 | mmdb::CoorManager | [protected] |
| ymbrick_0 | mmdb::CoorManager | [protected] |
| zbrick_0 | mmdb::CoorManager | [protected] |
| zmbrick_0 | mmdb::CoorManager | [protected] |
| ~CoorManager() | mmdb::CoorManager | |
| ~Mask() | mmdb::Mask | |
| ~Root() | mmdb::Root | |
| ~Stream() | mmdb::io::Stream | [inline, virtual] |
| ~UDData() | mmdb::UDData | |
1.7.2
