mmdb::Chain Member List

This is the complete list of members for mmdb::Chain, including all inherited members.

_copy(PChain chain)	mmdb::Chain	[protected]
_copy(PChain chain, PPAtom atom, int &atom_index)	mmdb::Chain	[protected]
_ExcludeResidue(const ResName resName, int seqNum, const InsCode insCode)	mmdb::Chain	[protected]
AddAtom(int seqNo, const InsCode insCode, PAtom atom)	mmdb::Chain
AddAtom(int resNo, PAtom atom)	mmdb::Chain
AddResidue(PResidue res)	mmdb::Chain
ApplyTransform(mat44 &TMatrix)	mmdb::Chain
Atom class	mmdb::Chain	[friend]
BondManager class	mmdb::Chain	[friend]
CalAtomStatistics(RAtomStat AS)	mmdb::Chain
Chain()	mmdb::Chain
Chain(PProModel model, const ChainID chID)	mmdb::Chain
Chain(io::RPStream Object)	mmdb::Chain
chainID	mmdb::Chain	[protected]
CheckID(const ChainID chID)	mmdb::Chain
CheckIDS(cpstr CID)	mmdb::Chain
CheckInAtoms()	mmdb::Chain	[protected]
CheckMask(PMask Mask)	mmdb::Mask
ClearMask()	mmdb::Mask
ConvertDBREF(cpstr PDBString)	mmdb::Chain
ConvertHET(cpstr PDBString)	mmdb::Chain
ConvertMODRES(cpstr PDBString)	mmdb::Chain
ConvertSEQADV(cpstr PDBString)	mmdb::Chain
ConvertSEQRES(cpstr PDBString)	mmdb::Chain
CoorManager class	mmdb::Chain	[friend]
Copy(PChain chain)	mmdb::Chain
CopyAnnotations(PChain chain)	mmdb::Chain
CopyMask(PMask Mask)	mmdb::Mask
DBRef	mmdb::Chain
DBReference class	mmdb::Chain	[friend]
DeleteAllAtoms(int seqNo, const InsCode insCode)	mmdb::Chain
DeleteAllAtoms(int resNo)	mmdb::Chain
DeleteAllAtoms()	mmdb::Chain
DeleteAllResidues()	mmdb::Chain
DeleteAltLocs()	mmdb::Chain
DeleteAtom(int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc)	mmdb::Chain
DeleteAtom(int seqNo, const InsCode insCode, int atomNo)	mmdb::Chain
DeleteAtom(int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc)	mmdb::Chain
DeleteAtom(int resNo, int atomNo)	mmdb::Chain
DeleteResidue(int resNo)	mmdb::Chain
DeleteResidue(int seqNum, const InsCode insCode)	mmdb::Chain
DeleteSolvent()	mmdb::Chain
Exclude	mmdb::Chain	[protected]
Expand(int n)	mmdb::Mask	[protected]
ExpandResidueArray(int inc)	mmdb::Chain	[protected]
FreeAnnotations()	mmdb::Chain
FreeMemory()	mmdb::Chain	[protected]
FreeUDDMemory()	mmdb::UDData	[protected]
GetAtom(int seqNo, const InsCode insCode, const AtomName aname, const Element elmnt, const AltLoc aloc)	mmdb::Chain
GetAtom(int seqNo, const InsCode insCode, int atomNo)	mmdb::Chain
GetAtom(int resNo, const AtomName aname, const Element elmnt, const AltLoc aloc)	mmdb::Chain
GetAtom(int resNo, int atomNo)	mmdb::Chain
GetAtomStatistics(RAtomStat AS)	mmdb::Chain
GetAtomTable(int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms)	mmdb::Chain
GetAtomTable(int resNo, PPAtom &atomTable, int &NumberOfAtoms)	mmdb::Chain
GetAtomTable1(int seqNo, const InsCode insCode, PPAtom &atomTable, int &NumberOfAtoms)	mmdb::Chain
GetAtomTable1(int resNo, PPAtom &atomTable, int &NumberOfAtoms)	mmdb::Chain
GetChainID()	mmdb::Chain	[inline]
GetChainID(pstr ChID)	mmdb::Chain
GetCoordHierarchy()	mmdb::Chain
GetDBRef(int dbRefNo)	mmdb::Chain
GetEntryID()	mmdb::Chain
getLength()	mmdb::Mask	[inline]
GetModel()	mmdb::Chain	[inline]
GetModelNum()	mmdb::Chain
GetModResidue(int modResNo)	mmdb::Chain
getNofIUData()	mmdb::UDData	[protected]
GetNofModResidues()	mmdb::Chain
getNofRUData()	mmdb::UDData	[protected]
getNofSUData()	mmdb::UDData	[protected]
GetNumberOfAtoms(bool countTers)	mmdb::Chain
GetNumberOfAtoms(int seqNo, const InsCode insCode)	mmdb::Chain
GetNumberOfAtoms(int resNo)	mmdb::Chain
GetNumberOfDBRefs()	mmdb::Chain
GetNumberOfResidues()	mmdb::Chain
GetResidue(int resNo)	mmdb::Chain
GetResidue(int seqNum, const InsCode insCode)	mmdb::Chain
GetResidueCreate(const ResName resName, int seqNum, const InsCode insCode, bool Enforce)	mmdb::Chain
GetResidueNo(int seqNum, const InsCode insCode)	mmdb::Chain
GetResidueTable(PPResidue &resTable, int &NumberOfResidues)	mmdb::Chain
GetUDData(int UDDhandle, int &iudd)	mmdb::Chain
GetUDData(int UDDhandle, realtype &rudd)	mmdb::Chain
GetUDData(int UDDhandle, pstr sudd, int maxLen)	mmdb::Chain
GetUDData(int UDDhandle, pstr &sudd)	mmdb::Chain
getUDData(int UDDhandle, int &iudd)	mmdb::UDData	[protected]
getUDData(int UDDhandle, realtype &rudd)	mmdb::UDData	[protected]
getUDData(int UDDhandle, pstr sudd, int maxLen)	mmdb::UDData	[protected]
getUDData(int UDDhandle, int *retcode=NULL)	mmdb::UDData	[protected]
getUDData(int UDDhandle, pstr &sudd)	mmdb::UDData	[protected]
Het	mmdb::Chain
HetRec class	mmdb::Chain	[friend]
InitChain()	mmdb::Chain	[protected]
InitMask()	mmdb::Mask	[protected]
InitUDData()	mmdb::UDData	[protected]
InsResidue(PResidue res, int pos)	mmdb::Chain
InsResidue(PResidue res, int seqNum, const InsCode insCode)	mmdb::Chain
isAminoacidChain()	mmdb::Chain
isInSelection(int selHnd)	mmdb::Chain
isMask()	mmdb::Mask
isNucleotideChain()	mmdb::Chain
isSolventChain()	mmdb::Chain
IUData	mmdb::UDData	[protected]
m	mmdb::Mask	[protected]
MakeAtomCIF(mmcif::PData CIF)	mmdb::Chain
Manager class	mmdb::Chain	[friend]
Mask()	mmdb::Mask
Mask(io::RPStream Object)	mmdb::Mask
MaskAtoms(PMask Mask)	mmdb::Chain
MaskResidues(PMask Mask)	mmdb::Chain
mlen	mmdb::Mask	[protected]
Model class	mmdb::Chain	[friend]
model	mmdb::Chain	[protected]
modRes	mmdb::Chain
ModRes class	mmdb::Chain	[friend]
NegMask()	mmdb::Mask
NewMask(PPMask Mask, int nMasks)	mmdb::Mask
nResidues	mmdb::Chain	[protected]
nWeights	mmdb::Chain	[protected]
PDBASCIIAtomDump(io::RFile f)	mmdb::Chain
PDBASCIIDump(io::RFile f)	mmdb::Chain
prevChainID	mmdb::Chain	[protected]
Print(pstr S)	mmdb::Mask
putUDData(int UDDhandle, int iudd)	mmdb::UDData	[protected]
putUDData(int UDDhandle, realtype rudd)	mmdb::UDData	[protected]
putUDData(int UDDhandle, cpstr sudd)	mmdb::UDData	[protected]
PutUDData(int UDDhandle, int iudd)	mmdb::Chain
PutUDData(int UDDhandle, realtype rudd)	mmdb::Chain
PutUDData(int UDDhandle, cpstr sudd)	mmdb::Chain
read(io::RFile f)	mmdb::Chain
mmdb::io::Stream::read(RFile)	mmdb::io::Stream	[inline, virtual]
RemoveMask(PMask Mask)	mmdb::Mask
Residue class	mmdb::Chain	[friend]
residue	mmdb::Chain	[protected]
Root class	mmdb::Chain	[friend]
RUData	mmdb::UDData	[protected]
SelManager class	mmdb::Chain	[friend]
SelMask(PMask Mask)	mmdb::Mask
SeqAdv class	mmdb::Chain	[friend]
seqAdv	mmdb::Chain
seqRes	mmdb::Chain
SeqRes class	mmdb::Chain	[friend]
SetChain(const ChainID chID)	mmdb::Chain
SetChainID(const ChainID chID)	mmdb::Chain
SetEntryID(const IDCode idCode)	mmdb::Chain
SetMask(PMask Mask)	mmdb::Mask
SetMaskBit(int BitNo)	mmdb::Mask
SetModel(PProModel model)	mmdb::Chain
setNofSUData(int newN)	mmdb::UDData	[protected]
SortResidues()	mmdb::Chain
Stream()	mmdb::io::Stream	[inline]
Stream(RPStream)	mmdb::io::Stream	[inline]
SUData	mmdb::UDData	[protected]
TrimResidueTable()	mmdb::Chain
UDData()	mmdb::UDData
UDData(io::RPStream Object)	mmdb::UDData
UnmaskAtoms(PMask Mask)	mmdb::Chain
UnmaskResidues(PMask Mask)	mmdb::Chain
Weight	mmdb::Chain	[protected]
write(io::RFile f)	mmdb::Chain
mmdb::io::Stream::write(RFile)	mmdb::io::Stream	[inline, virtual]
XadMask(PMask Mask)	mmdb::Mask
~Chain()	mmdb::Chain
~Mask()	mmdb::Mask
~Stream()	mmdb::io::Stream	[inline, virtual]
~UDData()	mmdb::UDData