mmdb::Atom Member List

This is the complete list of members for mmdb::Atom, including all inherited members.

_setBonds(PPAtom A)	mmdb::Atom	[protected]
AddBond(PAtom bond_atom, int bond_order, int nAdd_bonds=1)	mmdb::Atom
altLoc	mmdb::Atom
Atom()	mmdb::Atom
Atom(PResidue res)	mmdb::Atom
Atom(io::RPStream Object)	mmdb::Atom
Bond	mmdb::Atom	[protected]
CalAtomStatistics(RAtomStat AS)	mmdb::Atom
charge	mmdb::Atom
CheckData(cpstr S)	mmdb::Atom	[protected]
CheckID(const AtomName aname, const Element elname=NULL, const AltLoc aloc=pstr(""))	mmdb::Atom
CheckIDS(cpstr ID)	mmdb::Atom
CheckMask(PMask Mask)	mmdb::Mask
ClearMask()	mmdb::Mask
ConvertPDBANISOU(int ix, cpstr S)	mmdb::Atom
ConvertPDBATOM(int ix, cpstr S)	mmdb::Atom
ConvertPDBHETATM(int ix, cpstr S)	mmdb::Atom
ConvertPDBSIGATM(int ix, cpstr S)	mmdb::Atom
ConvertPDBSIGUIJ(int ix, cpstr S)	mmdb::Atom
ConvertPDBTER(int ix, cpstr S)	mmdb::Atom
CoorManager class	mmdb::Atom	[friend]
Copy(PAtom atom)	mmdb::Atom	[virtual]
CopyMask(PMask Mask)	mmdb::Mask
element	mmdb::Atom
energyType	mmdb::Atom
Expand(int n)	mmdb::Mask	[protected]
FreeBonds()	mmdb::Atom
FreeMemory()	mmdb::Atom	[protected]
FreeUDDMemory()	mmdb::UDData	[protected]
GetAAHydropathy()	mmdb::Atom
GetAASimilarity(const ResName resName)	mmdb::Atom
GetAASimilarity(PAtom A)	mmdb::Atom
GetAtomCharge(pstr chrg)	mmdb::Atom
GetAtomID(pstr AtomID)	mmdb::Atom
GetAtomIDfmt(pstr AtomID)	mmdb::Atom
GetAtomName()	mmdb::Atom	[inline]
GetBonds(RPAtomBond atomBond, int &nAtomBonds)	mmdb::Atom
GetBonds(RPAtomBondI atomBondI, int &nAtomBonds)	mmdb::Atom
GetBonds(PAtomBondI atomBondI, int &nAtomBonds, int maxlength)	mmdb::Atom
GetChain()	mmdb::Atom
GetChainCalphas(PPAtom &Calphas, int &nCalphas, cpstr altLoc="")	mmdb::Atom
GetChainID()	mmdb::Atom
GetCIF(int ix, mmcif::PLoop Loop, mmcif::PLoop LoopAnis)	mmdb::Atom
GetCoordHierarchy()	mmdb::Atom
GetCosine(PAtom a1, PAtom a2)	mmdb::Atom
GetData(cpstr S)	mmdb::Atom	[protected]
GetDist2(PAtom a)	mmdb::Atom
GetDist2(PAtom a, mat44 &tm)	mmdb::Atom
GetDist2(PAtom a, mat33 &r, vect3 &t)	mmdb::Atom
GetDist2(realtype ax, realtype ay, realtype az)	mmdb::Atom
GetElementName()	mmdb::Atom	[inline]
GetIndex()	mmdb::Atom	[inline]
GetInsCode()	mmdb::Atom
GetLabelAsymID()	mmdb::Atom
GetLabelCompID()	mmdb::Atom
GetLabelEntityID()	mmdb::Atom
GetLabelSeqID()	mmdb::Atom
getLength()	mmdb::Mask	[inline]
GetModel()	mmdb::Atom
GetModelNum()	mmdb::Atom
GetNBonds()	mmdb::Atom
getNofIUData()	mmdb::UDData	[protected]
getNofRUData()	mmdb::UDData	[protected]
getNofSUData()	mmdb::UDData	[protected]
GetOccupancy()	mmdb::Atom
GetResidue()	mmdb::Atom
GetResidueNo()	mmdb::Atom
GetResName()	mmdb::Atom
GetSeqNum()	mmdb::Atom
GetSSEType()	mmdb::Atom
GetStat(realtype v, realtype &v_min, realtype &v_max, realtype &v_m, realtype &v_m2)	mmdb::Atom	[protected]
getUDData(int UDDhandle, int &iudd)	mmdb::UDData	[protected]
getUDData(int UDDhandle, realtype &rudd)	mmdb::UDData	[protected]
getUDData(int UDDhandle, pstr sudd, int maxLen)	mmdb::UDData	[protected]
getUDData(int UDDhandle, int *retcode=NULL)	mmdb::UDData	[protected]
getUDData(int UDDhandle, pstr &sudd)	mmdb::UDData	[protected]
GetUDData(int UDDhandle, int &iudd)	mmdb::Atom
GetUDData(int UDDhandle, realtype &rudd)	mmdb::Atom
GetUDData(int UDDhandle, pstr sudd, int maxLen)	mmdb::Atom
GetUDData(int UDDhandle, pstr &sudd)	mmdb::Atom
Het	mmdb::Atom
index	mmdb::Atom	[protected]
InitAtom()	mmdb::Atom	[protected]
InitMask()	mmdb::Mask	[protected]
InitUDData()	mmdb::UDData	[protected]
isCTerminus()	mmdb::Atom
isInSelection(int selHnd)	mmdb::Atom
isMask()	mmdb::Mask
isMetal()	mmdb::Atom
isNTerminus()	mmdb::Atom
isSolvent()	mmdb::Atom
isTer()	mmdb::Atom	[inline]
IUData	mmdb::UDData	[protected]
label_atom_id	mmdb::Atom
m	mmdb::Mask	[protected]
MakeCIF(mmcif::PData CIF)	mmdb::Atom
MakePDBAtomName()	mmdb::Atom
MakeTer()	mmdb::Atom
Mask()	mmdb::Mask
Mask(io::RPStream Object)	mmdb::Mask
mlen	mmdb::Mask	[protected]
Model class	mmdb::Atom	[friend]
name	mmdb::Atom
nBonds	mmdb::Atom	[protected]
NegMask()	mmdb::Mask
NewMask(PPMask Mask, int nMasks)	mmdb::Mask
occupancy	mmdb::Atom
PDBASCIIDump(io::RFile f)	mmdb::Atom
Print(pstr S)	mmdb::Mask
putUDData(int UDDhandle, int iudd)	mmdb::UDData	[protected]
putUDData(int UDDhandle, realtype rudd)	mmdb::UDData	[protected]
putUDData(int UDDhandle, cpstr sudd)	mmdb::UDData	[protected]
PutUDData(int UDDhandle, int iudd)	mmdb::Atom
PutUDData(int UDDhandle, realtype rudd)	mmdb::Atom
PutUDData(int UDDhandle, cpstr sudd)	mmdb::Atom
read(io::RFile f)	mmdb::Atom
mmdb::io::Stream::read(RFile)	mmdb::io::Stream	[inline, virtual]
RemoveMask(PMask Mask)	mmdb::Mask
Residue class	mmdb::Atom	[friend]
residue	mmdb::Atom
RestoreElementName()	mmdb::Atom
Root class	mmdb::Atom	[friend]
RUData	mmdb::UDData	[protected]
segID	mmdb::Atom
SelManager class	mmdb::Atom	[friend]
SelMask(PMask Mask)	mmdb::Mask
serNum	mmdb::Atom
SetAtomIndex(int ix)	mmdb::Atom
SetAtomName(int ix, int sN, const AtomName aName, const AltLoc aLoc, const SegID sID, const Element eName)	mmdb::Atom
SetAtomName(const AtomName atomName)	mmdb::Atom
SetCharge(cpstr chrg)	mmdb::Atom
SetCharge(realtype chrg)	mmdb::Atom
SetCoordinates(realtype xx, realtype yy, realtype zz, realtype occ, realtype tFac)	mmdb::Atom
SetElementName(const Element elName)	mmdb::Atom
SetMask(PMask Mask)	mmdb::Mask
SetMaskBit(int BitNo)	mmdb::Mask
setNofSUData(int newN)	mmdb::UDData	[protected]
SetResidue(PResidue res)	mmdb::Atom
SetShortBinary()	mmdb::Atom
sigOcc	mmdb::Atom
sigTemp	mmdb::Atom
sigX	mmdb::Atom
sigY	mmdb::Atom
sigZ	mmdb::Atom
StandardPDBOut(cpstr Record, pstr S)	mmdb::Atom	[protected]
Stream()	mmdb::io::Stream	[inline]
Stream(RPStream)	mmdb::io::Stream	[inline]
su11	mmdb::Atom
su12	mmdb::Atom
su13	mmdb::Atom
su22	mmdb::Atom
su23	mmdb::Atom
su33	mmdb::Atom
SUData	mmdb::UDData	[protected]
tempFactor	mmdb::Atom
Ter	mmdb::Atom
Transform(mat33 &tm, vect3 &v)	mmdb::Atom
Transform(mat44 &tm)	mmdb::Atom
TransformCopy(mat44 &tm, realtype &xx, realtype &yy, realtype &zz)	mmdb::Atom
TransformSet(mat44 &tm, realtype xx, realtype yy, realtype zz)	mmdb::Atom
u11	mmdb::Atom
u12	mmdb::Atom
u13	mmdb::Atom
u22	mmdb::Atom
u23	mmdb::Atom
u33	mmdb::Atom
UDData()	mmdb::UDData
UDData(io::RPStream Object)	mmdb::UDData
WhatIsSet	mmdb::Atom
write(io::RFile f)	mmdb::Atom
mmdb::io::Stream::write(RFile)	mmdb::io::Stream	[inline, virtual]
x	mmdb::Atom
XadMask(PMask Mask)	mmdb::Mask
y	mmdb::Atom
z	mmdb::Atom
~Atom()	mmdb::Atom
~Mask()	mmdb::Mask
~Stream()	mmdb::io::Stream	[inline, virtual]
~UDData()	mmdb::UDData