gsmt::Aligner Member List

This is the complete list of members for gsmt::Aligner, including all inherited members.

A	gsmt::Clusterer	[protected]
A1	gsmt::Clusterer	[protected]
A2	gsmt::Clusterer	[protected]
addSegment(int i1, int i2, int n, int &clusterID, mmdb::rvector mc1, mmdb::rvector mc2)	gsmt::Clusterer	[protected]
Align(PStructure s1, PStructure s2, bool measure_cpu)	gsmt::Aligner
Aligner()	gsmt::Aligner
Aligner(mmdb::io::RPStream Object)	gsmt::Aligner
c10	gsmt::Refiner	[protected]
c20	gsmt::Refiner	[protected]
calcMassCenters(mmdb::PPAtom atom1, mmdb::PPAtom atom2, int n, mmdb::rvector mc1, mmdb::rvector mc2)	gsmt::Clusterer	[protected]
cdist	gsmt::Refiner	[protected]
checkAndAdd(PSegCluster C, int i1, int i2, int n, mmdb::rvector mc1, mmdb::rvector mc2)	gsmt::Clusterer	[protected]
checkRTMatrix(mmdb::mat44 &T, int clusterNo)	gsmt::Refiner	[protected]
cix	gsmt::Refiner	[protected]
Cluster	gsmt::Clusterer	[protected]
Clusterer()	gsmt::Clusterer
Clusterer(mmdb::io::RPStream Object)	gsmt::Clusterer
clustTol2	gsmt::Clusterer	[protected]
contact	gsmt::Refiner	[protected]
D1	gsmt::Clusterer	[protected]
D2	gsmt::Clusterer	[protected]
DA	gsmt::Refiner	[protected]
deltaRT	gsmt::Refiner	[protected]
filterTol2	gsmt::Clusterer	[protected]
FreeClusters()	gsmt::Clusterer	[protected]
FreeMemory()	gsmt::Aligner	[protected]
FreeRefMemory()	gsmt::Refiner	[protected]
FreeSupMemory()	gsmt::Clusterer	[protected]
GetBestMatch(RPSuperposition SD, int &matchNo)	gsmt::Aligner
GetDMatMemory(int nat1, int nat2)	gsmt::Clusterer	[protected]
GetMatch(int matchNo)	gsmt::Aligner
GetR0()	gsmt::Clusterer	[inline]
GetSeedAlignment(int matchNo, mmdb::ivector &ac1, mmdb::ivector &ac2)	gsmt::Aligner
GetSupMemory()	gsmt::Clusterer	[protected]
InitClass()	gsmt::Aligner	[protected]
isRotoinversion(mmdb::PPAtom atom1, mmdb::PPAtom atom2, int n, mmdb::rvector mc1, mmdb::rvector mc2)	gsmt::Clusterer	[protected]
iterMax	gsmt::Refiner	[protected]
M1	gsmt::Refiner	[protected]
makeSegClusters(PStructure s1, PStructure s2)	gsmt::Clusterer	[protected]
maxClustRefine	gsmt::Refiner	[protected]
maxContact	gsmt::Refiner	[protected]
minMatch	gsmt::Clusterer	[protected]
minMatch1	gsmt::Clusterer	[protected]
minMatch2	gsmt::Clusterer	[protected]
minSegLen	gsmt::Clusterer	[protected]
natoms1	gsmt::Clusterer	[protected]
natoms2	gsmt::Clusterer	[protected]
nClusters	gsmt::Clusterer	[protected]
PrintAlignTable(mmdb::io::RFile f, PSuperposition SD)	gsmt::Aligner
printClusterData()	gsmt::Refiner	[protected]
pruneClusters(int i1)	gsmt::Clusterer	[protected]
pruneSegGap	gsmt::Clusterer	[protected]
pruneSegLen	gsmt::Clusterer	[protected]
QR0	gsmt::Clusterer	[protected]
QSP	gsmt::Refiner	[protected]
radius2	gsmt::Refiner	[protected]
read(mmdb::io::RFile f)	gsmt::Aligner
Refine(PStructure s1, PStructure s2)	gsmt::Refiner	[protected]
RefineCluster(int clusterNo)	gsmt::Refiner	[protected]
refineDepth	gsmt::Refiner	[protected]
Refiner()	gsmt::Refiner
Refiner(mmdb::io::RPStream Object)	gsmt::Refiner
RV1	gsmt::Clusterer	[protected]
segTol	gsmt::Clusterer	[protected]
SetPerformanceLevel(PERFORMANCE_CODE performance)	gsmt::Aligner
SetR0(mmdb::realtype R0)	gsmt::Clusterer	[inline]
SetSimilarityThresholds(mmdb::realtype minPart1, mmdb::realtype minPart2)	gsmt::Aligner
sid	gsmt::Clusterer	[protected]
Superpose(mmdb::ivector ac1, mmdb::mat44 &T)	gsmt::Refiner	[protected]
U	gsmt::Clusterer	[protected]
V	gsmt::Clusterer	[protected]
W	gsmt::Clusterer	[protected]
write(mmdb::io::RFile f)	gsmt::Aligner
x2	gsmt::Refiner	[protected]
y2	gsmt::Refiner	[protected]
z2	gsmt::Refiner	[protected]
~Aligner()	gsmt::Aligner
~Clusterer()	gsmt::Clusterer
~Refiner()	gsmt::Refiner