dynarama dynarama src pixmaps C False True False GtkWindow window1 destroy on_window1_destroy Tue, 01 Jan 2002 15:42:17 GMT configure_event on_window1_configure_event Mon, 01 Dec 2003 05:00:25 GMT delete_event on_window1_delete_event Sat, 23 Sep 2006 21:00:49 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkHBox main_window_hbox False 0 GtkVBox vbox1 False 0 0 True True GtkMenuBar menubar1 GTK_SHADOW_OUT 0 False False GtkMenuItem file1 activate on_file1_activate Tue, 01 Jan 2002 15:43:04 GMT _File False GtkMenu file1_menu GtkMenuItem open_coordinates1 pdb, cif or shelx res format activate on_open_coordinates1_activate Tue, 01 Jan 2002 15:45:25 GMT Open Coordinates... False GtkMenuItem auto_open_mtz activate on_auto_open_mtz_activate Thu, 17 Jun 2004 13:04:19 GMT Auto Open MTZ... False GtkMenuItem open_dataset1 Create a map "on the fly" from mtz, phs or mmCIF data activate on_open_dataset1_activate Tue, 01 Jan 2002 15:45:25 GMT Open MTZ, mmCIF, fcf or phs... False GtkMenuItem open_map1 Open a pre-calculated CCP4 map or CNS (".cns") map activate on_open_map1_activate Wed, 12 Jun 2002 16:15:46 GMT Open Map... False GtkMenuItem close_molecule1 activate on_close_molecule1_activate Tue, 24 Jun 2003 16:18:29 GMT Close molecule/map... False GtkMenuItem import_cif_dictionary1 activate on_import_cif_dictionary1_activate Thu, 05 Jun 2003 11:50:03 GMT Import CIF dictionary... False GtkMenuItem get_monomer1 Give a 3-letter code and use libcheck to generate coordinates from REFMAC monomer library activate on_get_monomer1_activate Fri, 19 Mar 2004 15:45:16 GMT Get Monomer... False GtkMenuItem search_monomer_library1 Search monomer names to find 3-letter code activate on_search_monomer_library1_activate Tue, 27 Jun 2006 01:04:03 GMT Search Monomer Library... False GtkMenuItem smiles1 activate on_smiles1_activate Mon, 20 Feb 2006 15:03:27 GMT SMILES... False GtkMenuItem get_pdb_using_code1 Get PDB Coordinates file from server using accession code activate on_get_pdb_using_code1_activate Fri, 14 Feb 2003 04:52:30 GMT Get PDB using Accession Code... False GtkMenuItem get_pdb_and_map_using_eds1 Use the Electron Density Server at Uppsala University to get coords and map... (Long live the EDS!) activate on_get_pdb_and_map_using_eds1_activate Mon, 25 Jul 2005 20:05:26 GMT Get PDB & Map using EDS... False GtkMenuItem save_coordinates1 activate on_save_coordinates1_activate Tue, 13 May 2003 20:18:38 GMT Save Coordinates... False GtkMenuItem save_symmetry_coordinates1 activate on_save_symmetry_coordinates1_activate Fri, 17 Sep 2004 07:12:23 GMT Save Symmetry Coordinates... False GtkMenuItem save_state1 activate on_save_state1_activate Sat, 19 Feb 2005 09:02:41 GMT Save State... False GtkMenuItem recover_session1 activate on_recover_session1_activate Mon, 22 Mar 2004 11:50:15 GMT Recover Session... False GtkMenuItem exit1 bye activate on_exit1_activate Tue, 01 Jan 2002 15:45:43 GMT Exit False GtkMenuItem edit1 _Edit False GtkMenu edit1_menu GtkMenuItem map_colour1 activate on_map_colour1_activate Wed, 13 Feb 2002 15:25:23 GMT Map Colour... False GtkMenuItem density_size1 activate on_density_size1_activate Tue, 05 Feb 2002 13:39:39 GMT Map Parameters... False GtkMenuItem bond_colours1 activate on_bond_colours1_activate Tue, 29 Nov 2005 20:54:30 GMT Bond Colours... False GtkMenuItem bond_parameters1 activate on_bond_parameters1_activate Wed, 13 Oct 2004 23:25:45 GMT Bond Parameters... False GtkMenuItem skeleton_parameters1 Skeleton Parameters False GtkMenu skeleton_parameters1_menu GtkMenuItem skeleton_colour1 activate on_skeleton_colour1_activate Fri, 26 Jul 2002 18:59:52 GMT Skeleton Colour... False GtkMenuItem skeleton_box_radius1 activate on_skeleton_box_radius1_activate Sat, 14 Sep 2002 23:01:18 GMT Skeleton Box Radius... False GtkMenuItem skeletonization_level1 activate on_skeletonization_level1_activate Tue, 24 Sep 2002 09:32:25 GMT Skeletonization Level... False GtkMenuItem residue_info2 activate on_residue_info2_activate Mon, 13 Oct 2003 17:08:07 GMT Residue Info... False GtkMenuItem font_size1 activate on_font_size1_activate Sun, 03 Mar 2002 05:30:42 GMT Font Size... False GtkMenuItem pink_pointer_size1 activate on_pink_pointer_size1_activate Tue, 15 Oct 2002 00:20:52 GMT Pink Pointer Size... False GtkMenuItem background_colour1 activate on_background_colour1_activate Sun, 25 Jul 2004 03:05:36 GMT Background Colour... False GtkMenu background_colour1_menu GtkRadioMenuItem background_black1 activate on_background_black1_activate Sat, 01 Mar 2003 21:12:42 GMT Black False True background GtkRadioMenuItem background_white1 activate on_background_white1_activate Sat, 01 Mar 2003 21:12:42 GMT White True True background GtkMenuItem calculate1 _Calculate False GtkMenu calculate1_menu GtkMenuItem regularize1 activate on_model_refine_activate Mon, 12 May 2003 14:19:01 GMT Model/Fit/Refine... False GtkMenuItem other_modelling_tools1 activate on_other_modelling_tools1_activate Mon, 27 Jun 2005 09:39:03 GMT Other Modelling Tools... False GtkMenuItem ssm_superposition1 activate on_ssm_superposition1_activate Mon, 29 Mar 2004 10:24:33 GMT SSM Superpose... False GtkMenuItem lsq_superpose1 Least squares fit structures using residue range activate on_lsq_superpose1_activate Thu, 03 Aug 2006 11:22:12 GMT LSQ Superpose... False GtkMenuItem merge_molecules1 activate on_merge_molecules1_activate Thu, 24 Jun 2004 17:39:09 GMT Merge Molecules... False GtkMenuItem mutate_molecule1 activate on_mutate_molecule1_activate Thu, 24 Jun 2004 17:49:46 GMT Mutate Residue Range... False GtkMenuItem align_&_mutate1 activate on_align_&_mutate1_activate Fri, 14 Jan 2005 09:50:29 GMT Align & Mutate... False GtkMenuItem renumber_residues1 activate on_renumber_residues1_activate Fri, 30 Jul 2004 01:38:02 GMT Renumber Residues... False GtkMenuItem change_chain_ids2 activate on_change_chain_ids2_activate Wed, 06 Apr 2005 21:39:04 GMT Change Chain IDs... False GtkMenuItem move_molecule_here1 activate on_move_molecule_here1_activate Thu, 22 Jun 2006 16:27:16 GMT Move Molecule Here... False GtkMenuItem fit_loop1 activate on_fit_loop1_activate Sun, 20 Mar 2005 15:56:50 GMT Fit Loop... False GtkMenuItem map_sharpening1 activate on_map_sharpening1_activate Mon, 25 May 2009 15:39:46 GMT Map Sharpening... False GtkMenuItem cowtan/foadi_skeleton1 activate on_skeleton1_activate Tue, 30 Sep 2003 14:27:33 GMT Map Skeleton... False GtkMenuItem ncs_maps1 activate on_ncs_maps1_activate Thu, 04 Nov 2004 19:11:46 GMT NCS Maps... False GtkMenuItem frames/sec1 activate on_fps1_activate Tue, 30 Jul 2002 11:34:18 GMT Frames/Sec... False GtkMenuItem scripting_testing1 activate on_scripting_window_activate Mon, 03 Feb 2003 11:26:47 GMT Scripting... False GtkMenuItem run_script1 activate on_run_script1_activate Tue, 17 Jun 2003 15:17:38 GMT Run Script... False GtkMenuItem draw1 _Draw False GtkMenu draw1_menu GtkMenuItem go_to_atom1 activate on_go_to_atom1_activate Mon, 19 Aug 2002 14:25:33 GMT Go To Atom... False GtkMenuItem undo_last_navigation1 activate on_undo_last_navigation1_activate Tue, 28 Jun 2005 07:32:05 GMT Undo Last Navigation False GtkMenuItem centre_atom_label1 activate on_centre_atom_label1_activate Tue, 23 Mar 2004 22:59:39 GMT Centre Atom Label... False GtkMenuItem sequence_view1 activate on_sequence_view1_activate Tue, 16 Dec 2003 14:43:07 GMT Sequence View False GtkMenuItem anisotropic_atoms1 activate on_anisotropic_atoms1_activate Sun, 24 Feb 2002 23:25:55 GMT Anisotropic Atoms... False GtkMenuItem show_symmetry1 activate on_show_symmetry1_activate Tue, 19 Feb 2002 17:10:55 GMT Cell & Symmetry... False GtkMenuItem additional_representation1 activate on_additional_representation1_activate Thu, 13 Mar 2008 15:40:44 GMT Additional Representation... False GtkMenuItem ncs_ghost_control1 Non-crystallographic Ghost Controller activate on_ncs_ghost_control1_activate Fri, 21 Oct 2005 15:30:36 GMT NCS Ghost Control... False GtkMenuItem spin_view_on/off1 activate on_spin_view_on/off1_activate Thu, 27 Apr 2006 11:23:32 GMT Spin View On/Off False GtkMenuItem screenshot1 Screenshot False GtkMenu screenshot1_menu GtkMenuItem simple1 activate on_simple1_activate Mon, 29 Aug 2005 17:08:41 GMT Simple... False GtkMenuItem povray1 activate on_povray1_activate Mon, 29 Aug 2005 17:08:41 GMT Povray... False GtkMenuItem raster3d1 activate on_raster3d1_activate Mon, 29 Aug 2005 17:08:41 GMT Raster3D... False GtkMenuItem generic_display_objects1 activate on_generic_display_objects1_activate Mon, 27 Mar 2006 20:25:09 GMT Generic Display Objects... False GtkMenuItem antialiasing1 activate on_antialiasing1_activate Fri, 03 Sep 2004 23:30:50 GMT Antialiasing... False GtkMenuItem stereo1 activate on_stereo1_activate Tue, 05 Oct 2004 09:21:43 GMT Stereo... False GtkMenuItem clipping1 activate on_clipping1_activate Mon, 29 Mar 2004 17:45:35 GMT Clipping... False GtkMenuItem crosshairs1 activate on_crosshairs1_activate Sat, 25 Oct 2003 00:49:44 GMT Crosshairs... False GtkMenuItem zoom1 activate on_zoom1_activate Fri, 12 Mar 2004 10:23:38 GMT Zoom... False GtkMenuItem dragged_map1 activate on_dragged_map1_activate Mon, 11 Feb 2002 01:21:23 GMT Dragged Map... False GtkMenuItem recentring1 activate on_recentring1_activate Sun, 03 Mar 2002 03:17:39 GMT Smooth Recentring... False GtkMenuItem coordinates_recentring1 activate on_coordinates_recentring1_activate Mon, 18 Aug 2003 21:19:35 GMT Coordinates Recentring... False GtkMenuItem map_and_mol_control1 Control display and activity of maps and molecules activate on_map_and_mol_control1_activate Fri, 16 Aug 2002 17:33:09 GMT D_isplay Manager False GtkMenuItem main_menu_info _Measures False GtkMenu main_menu_info_menu GtkMenuItem residue_info1 Display atom names, temperature factors and occupances of all atoms in the residue activate on_residue_info1_activate Wed, 07 May 2003 16:12:53 GMT Residue Info... False GtkMenuItem distances_&_angles1 activate on_distances_and_angles1_activate Wed, 10 Mar 2004 13:24:42 GMT Distances & Angles... False GtkMenuItem environment_distances1 activate on_environment_distances1_activate Tue, 27 May 2003 14:22:22 GMT Environment Distances... False GtkMenuItem plane_distances1 activate on_plane_distances1_activate Wed, 19 Oct 2005 14:49:51 GMT Plane Distances... False GtkMenuItem pointer_distances1 activate on_pointer_distances1_activate Mon, 08 Nov 2004 13:55:53 GMT Pointer Distances... False GtkMenuItem clear_atom_labels1 activate on_clear_atom_labels1_activate Tue, 23 May 2006 06:16:48 GMT Clear Atom Labels False GtkMenuItem validate1 activate on_validate1_activate Mon, 17 Apr 2006 02:06:21 GMT _Validate False GtkMenu validate1_menu GtkMenuItem ramachandran_plot1 activate on_ramachandran_plot1_activate Thu, 19 Aug 2004 10:44:05 GMT Ramachandran Plot False GtkMenuItem ramachandran_differences_plot1 Ramachandran Difference Plot activate on_ramachandran_differences_plot1_activate Sat, 04 Dec 2004 23:17:05 GMT Kleywegt Plot... False GtkMenuItem incorrect_chiral_volumes1 activate on_incorrect_chiral_volumes1_activate Tue, 17 Aug 2004 10:55:53 GMT Incorrect Chiral Volumes... False GtkMenuItem unmodelled_blobs1 activate on_unmodelled_blobs1_activate Tue, 17 Aug 2004 11:11:09 GMT Unmodelled blobs... False GtkMenuItem difference_map_peaks1 activate on_difference_map_peaks1_activate Thu, 21 Oct 2004 14:04:03 GMT Difference Map Peaks... False GtkMenuItem check_waters1 activate on_check_waters1_activate Sun, 05 Dec 2004 17:48:11 GMT Check/Delete Waters... False GtkMenuItem geometry_analysis1 Flags distortions in Bond, Angles and Planes activate on_geometry_analysis1_activate Tue, 21 Sep 2004 13:40:56 GMT Geometry analysis False GtkMenuItem peptide_omega_analysis1 Flags deviations from Trans Peptide activate on_peptide_omega_analysis1_activate Tue, 21 Sep 2004 13:40:56 GMT Peptide omega analysis False GtkMenuItem temp_fact_variance_analysis1 Flags Residues with Large Variance in Atom B factors activate on_temp_fact_variance_analysis1_activate Tue, 21 Sep 2004 13:40:56 GMT Temp. fact. variance analysis False GtkMenuItem gln_and_asn_b_factor_outliers1 Nakagawa's Bees (probable flips): identify OE1 and NE2 B-factor outliers in GLNs (similarly ASNs are analysed) activate on_gln_and_asn_b_factor_outliers1_activate Sun, 03 Dec 2006 09:29:33 GMT GLN and ASN B-factor Outliers False GtkMenuItem rotamer_analysis1 Flags Unusual Rotamers, Missing Atoms and Nomenclature Errors activate on_rotamer_analysis1_activate Fri, 24 Sep 2004 15:02:21 GMT Rotamer analysis False GtkMenuItem density_fit_analysis1 activate on_density_fit_analysis1_activate Sat, 25 Sep 2004 08:10:41 GMT Density fit analysis False GtkMenuItem probe_clashes1 activate on_probe_clashes1_activate Fri, 14 Apr 2006 19:03:49 GMT Probe clashes False GtkMenuItem ncs_differences1 activate on_ncs_differences1_activate Thu, 24 Jan 2008 20:07:48 GMT NCS Differences False GtkMenuItem hid1 HID False GtkMenu hid1_menu GtkMenuItem scrollwheel1 ScrollWheel False GtkMenu scrollwheel1_menu GtkMenuItem attach_scroll_wheel_to_which_map?1 activate on_attach_scroll_wheel_to_which_map?1_activate Mon, 29 Apr 2002 17:07:21 GMT Attach scroll wheel to which map? False GtkMenuItem virtual_trackball1 activate on_virtual_trackball_menu_pops Thu, 02 Oct 2003 00:36:55 GMT Virtual Trackball False GtkMenu virtual_trackball1_menu GtkRadioMenuItem flat1 activate on_vt_flat1_activate Fri, 26 Jul 2002 13:12:31 GMT Flat False True vtrack GtkRadioMenuItem spherical_surface1 activate on_vt_spherical_surface1_activate Fri, 26 Jul 2002 13:12:31 GMT Spherical Surface True True vtrack GtkMenuItem reset_view1 Recentre of the last read molecule that is displayed activate on_reset_view1_activate Thu, 31 Mar 2005 13:55:09 GMT _Reset View False GtkMenuItem help1 About False GtkMenu help1_menu GtkMenuItem on_line_docs_url1 activate on_on_line_docs_url1_activate Mon, 11 Apr 2005 07:21:25 GMT On Line Docs URL... False GtkMenuItem about1 activate on_about1_activate Sat, 26 Jan 2002 16:40:56 GMT About... False GtkMenuItem hints1 activate on_hints1_activate Thu, 26 Jun 2003 09:12:24 GMT Hints... False GtkFrame accept_reject_dialog_frame False 0 GTK_SHADOW_ETCHED_IN 0 True True Placeholder GtkHBox main_window_graphics_hbox True 0 0 True True Placeholder Placeholder GtkStatusbar main_window_statusbar text_popped on_main_window_statusbar_text_popped Tue, 22 Feb 2005 01:31:35 GMT text_pushed on_main_window_statusbar_text_pushed Tue, 22 Feb 2005 01:31:41 GMT 0 False False GtkFrame main_window_model_fit_dialog_frame False 0 GTK_SHADOW_ETCHED_IN 0 False False Placeholder GtkFrame gtkhtml_frame False 0 GTK_SHADOW_ETCHED_IN 0 True True Placeholder GtkFileSelection coords_fileselection1 10 destroy on_coords_fileselection1_destroy Fri, 25 Aug 2006 09:23:43 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button ok_button_coordinates True True clicked on_ok_button_coordinates_clicked Tue, 01 Jan 2002 16:52:10 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button cancel_coords_button1 True True clicked on_cancel_coords_button1_clicked Tue, 01 Jan 2002 18:14:48 GMT Cancel GTK_RELIEF_NORMAL GtkFileSelection dataset_fileselection1 10 destroy on_dataset_fileselection1_destroy Fri, 25 Aug 2006 09:23:21 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button ok_button_dataset True True clicked on_ok_button_dataset_clicked Tue, 01 Jan 2002 16:52:04 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button cancel_dataset_button1 True True clicked on_cancel_dataset_button1_clicked Tue, 01 Jan 2002 18:15:25 GMT Cancel GTK_RELIEF_NORMAL GtkWindow column_label_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox2 6 False 0 GtkHBox hbox88 False 0 0 True True GtkLabel label177 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkButton column_label_expert_mode_button When clicked, add anomalous and resolution limit options (generally not needed) True clicked on_column_label_expert_mode_button_clicked Wed, 16 Jun 2004 12:51:28 GMT Expert Mode? GTK_RELIEF_NORMAL 0 False False Placeholder GtkLabel label1 Column Labels for Map Synthesis: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 7 False False GtkVBox vbox3 False 0 0 True True GtkFrame frame1 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox1 5 False 0 GtkLabel label2 Amplitudes GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 3 False False GtkOptionMenu optionmenu1 True - 0 0 False False GtkFrame frame2 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox4 5 False 0 GtkLabel label3 Phases GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 3 False False GtkOptionMenu optionmenu2 True - 0 0 False False GtkFrame frame23 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox28 False 0 GtkHBox hbox15 False 0 0 True True GtkLabel label30 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton use_weights_checkbutton 4 Weights are usually used for experimental phasing. When making a map from REFMAC output one (almost) never needs Weights. True toggled on_use_weights_checkbutton_toggled Thu, 24 Jul 2003 11:39:57 GMT Use Weights? False True 0 False False GtkHBox column_label_window_weights_hbox 6 False False 0 0 True True GtkLabel label31 Weights GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 3 False False GtkOptionMenu optionmenu3 Usually not needed for map from refmac... True 0 0 False False GtkFrame column_labels_resolution_limit_frame 3 False Resolution limits 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox113 10 False 0 GtkCheckButton column_labels_use_resolution_limits_checkbutton True toggled on_column_labels_use_resolution_limits_checkbutton_toggled Wed, 16 Jun 2004 17:10:15 GMT Use Resolution Limits False True 0 False False GtkHBox resolution_limits_hbox False False 0 0 True True GtkLabel label175 Low: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry column_labels_reso_low_entry 60 True True True 0 0 False False GtkLabel label174 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkLabel label176 High: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry column_labels_reso_high_entry 60 True True True 0 0 False False GtkCheckButton difference_map_checkbutton See Section 6.5 of the User Manual for default Diference Map colouring. True Is a Difference Map False True 7 False False GtkHSeparator hseparator9 10 True True GtkCheckButton refmac_column_labels_checkbutton If you want to use these data to run refmac, you will need to assign the columns for the observations, the sigmas thereof and the R free... True toggled on_refmac_column_labels_checkbutton_toggled Thu, 28 Aug 2003 13:18:27 GMT Assign Labels for Refmac? False True 0 False False GtkFrame column_label_refmac_frame False 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox79 False 0 GtkHBox hbox53 False 26 2 True True GtkLabel label105 Fobs GTK_JUSTIFY_CENTER False 0.5 0.5 6 0 0 False False GtkOptionMenu refmac_fobs_optionmenu True 0 0 False False GtkHBox hbox54 False 4 2 True True GtkLabel label106 Sig Fobs GTK_JUSTIFY_CENTER False 0.5 0.5 6 0 0 False False GtkOptionMenu refmac_sigfobs_optionmenu True 0 0 False False GtkHBox hbox55 False 21 2 True True GtkLabel label107 R free GTK_JUSTIFY_CENTER False 0.5 0.5 6 0 0 False False GtkOptionMenu refmac_rfree_optionmenu True 0 0 False False GtkHBox hbox3 2 False 0 11 True True GtkButton column_label_ok_button True True True clicked on_column_label_ok_button_clicked Tue, 01 Jan 2002 18:30:49 GMT OK GTK_RELIEF_NORMAL 6 True True GtkButton column_label_cancel_button True True clicked on_column_label_cancel_button_clicked Sun, 06 Jan 2002 10:30:30 GMT Cancel GTK_RELIEF_NORMAL 6 True True GtkLabel label8 (Thinking, not crashing) GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkWindow clipping_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox4 False 0 GtkLabel label4 Clipping Adjustment GTK_JUSTIFY_CENTER False 0 7.45058e-09 5 5 0 False False GtkFrame frame3 9 0 GTK_SHADOW_ETCHED_IN 8 True True GtkHScale hscale1 197 True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkButton clipping_button 6 True True True clicked on_clipping_button_clicked Sat, 26 Jan 2002 19:02:13 GMT OK GTK_RELIEF_NORMAL 0 False False GtkWindow global_map_properties_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox map_properties_vbox False 0 GtkLabel label5 Density Settings GTK_JUSTIFY_CENTER False 0.5 0.5 2 6 0 False False Placeholder GtkFrame frame4 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox5 False 0 GtkLabel label6 Map Radius: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 7 False False GtkEntry entry1 78 True key_press_event on_entry1_key_press_event Sat, 08 Apr 2006 12:15:46 GMT True True 0 11 False True GtkLabel label7 Angstroems GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 18 False False GtkButton map_radius_apply_button True clicked on_map_radius_apply_button_clicked Sat, 08 Apr 2006 12:13:36 GMT Apply GTK_RELIEF_NORMAL 0 False False GtkLabel label275 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame frame24 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox17 False 0 GtkLabel label32 Increment Size GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkEntry iso_level_increment_entry 46 True True True 0 6 False True GtkLabel label33 e/A^3 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkFrame frame25 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox18 False 0 GtkLabel label34 Diff Map Increment GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkEntry diff_map_iso_level_increment_entry 95 True True True 0 0 False True GtkLabel label35 e/A^3 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkFrame frame43 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox42 False 0 GtkLabel label84 Sampling Rate: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry map_sampling_rate_entry 52 Shannon Sampling multiplier. 1.5 is the standard value. Use larger numbers for smoother maps True True True 0 0 False True Placeholder GtkFrame frame49 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox61 False 0 GtkCheckButton map_dynamic_map_sampling_checkbutton 1 True toggled on_map_dynamic_map_sampling_checkbutton_toggled Sun, 01 Jun 2003 19:56:04 GMT Dynamic Map Sampling False True 0 False False GtkCheckButton map_dynamic_map_size_display_checkbutton True toggled on_map_dynamic_map_size_display_checkbutton_toggled Sun, 01 Jun 2003 19:56:11 GMT Dynamic Map Display Size False True 0 False False GtkHSeparator hseparator3 6 True True GtkHBox hbox6 10 False 0 0 True True GtkButton density_ok_button True True True True clicked on_density_ok_button_clicked Tue, 05 Feb 2002 13:27:01 GMT OK GTK_RELIEF_NORMAL 10 True True GtkButton density_cancel True True clicked on_density_cancel_clicked Tue, 05 Feb 2002 13:43:27 GMT Cancel GTK_RELIEF_NORMAL 10 True True GtkWindow fps_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox6 False 0 GtkLabel label9 Show Frames Per Second? GTK_JUSTIFY_CENTER False 0.5 0.5 6 5 4 False False GtkFrame frame5 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox7 False 0 GtkRadioButton radiobutton1 True Yes False True gr 0 False False GtkRadioButton radiobutton2 True No True True gr 0 False False GtkButton fps_window_ok_button 8 True True True True clicked on_fps_window_ok_button_clicked Sat, 09 Feb 2002 13:42:46 GMT OK GTK_RELIEF_NORMAL 6 False False GtkWindow active_map_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox8 False 0 GtkLabel label10 Active Map on Dragging? GTK_JUSTIFY_CENTER False 0.5 0.5 4 5 9 False False GtkFrame frame6 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox9 False 0 GtkRadioButton active_map_radiobutton_yes True Yes False True map 0 False False GtkRadioButton active_map_radiobutton_no True No False True map 0 False False GtkButton active_map_ok_button 10 True True True clicked on_active_map_ok_button_clicked Mon, 11 Feb 2002 01:14:09 GMT OK GTK_RELIEF_NORMAL 9 False False GtkWindow show_symmetry_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox10 False 0 GtkLabel label11 Symmetry & Unit Cell GTK_JUSTIFY_CENTER False 0.5 0.5 3 5 0 False False GtkFrame frame163 6 Symmetry 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox169 False 0 GtkFrame frame7 4 Master Switch: Show Symmetry Atoms? 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox11 False 0 GtkRadioButton show_symmetry_yes_radiobutton True Yes False True symm_gr 0 False False GtkRadioButton show_symmetry_no_radiobutton True No True True symm_gr 0 False False GtkButton show_symmetry_molecule_control_button 4 True clicked on_show_symmetry_molecule_control_button_clicked Mon, 10 Oct 2005 11:44:32 GMT Symmetry by Molecule... GTK_RELIEF_NORMAL 4 False False GtkFrame frame8 4 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox12 False 0 GtkLabel label12 Symmetry Atom Display Radius: GTK_JUSTIFY_CENTER False 0.5 0.5 12 2 0 False False GtkHBox hbox7 False 0 0 True True GtkLabel label13 Radius: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry symmetry_radius_entry 42 True True True 0 0 True True GtkLabel label14 A GTK_JUSTIFY_CENTER False 0.5 0.5 5 0 0 False False GtkFrame frame9 4 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox13 False 0 GtkHBox hbox8 False 0 6 True True GtkLabel label15 Symmetry Colour GTK_JUSTIFY_CENTER False 0.5 0.5 10 0 0 False False GtkButton symmetry_colour_patch_button True clicked on_symmetry_colour_patch_button_clicked Tue, 19 Feb 2002 23:51:07 GMT GTK_RELIEF_NORMAL 4 False False GtkHBox hbox33 False 0 GtkFrame frame33 0 GTK_SHADOW_ETCHED_IN 0 True True Placeholder GtkLabel label68 Sym Colour GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 2 False False GtkHBox hbox9 False 0 0 True True GtkFrame frame10 4 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox10 4 False 0 GtkLabel label16 Colour Merge: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 4 False False GtkHScale hscale_symmetry_colour 112 True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 0 True True GtkCheckButton show_symmetry_expanded_labels_checkbutton True Expanded Symmetry Atom Labels? False True 0 False False GtkFrame frame11 Show Unit Cells? 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox15 False 0 GtkRadioButton unit_cell_yes_radiobutton True toggled on_unit_cell_yes_radiobutton_toggled Tue, 09 May 2006 18:06:29 GMT Yes False True unit_cell_gr 0 False False GtkRadioButton unit_cell_no_radiobutton True toggled on_unit_cell_no_radiobutton_toggled Tue, 09 May 2006 18:06:38 GMT No True True unit_cell_gr 0 False False Placeholder GtkHBox hbox133 False 0 9 False False GtkButton show_symmetry_apply_button True True True True clicked on_show_symmetry_apply_button_clicked Mon, 10 Oct 2005 11:52:39 GMT Apply GTK_RELIEF_NORMAL 4 True True GtkButton show_symmetry_ok_button True True clicked on_show_symmetry_ok_button_clicked Tue, 19 Feb 2002 22:32:59 GMT OK GTK_RELIEF_NORMAL 4 True True GtkWindow about_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox14 False 0 GtkScrolledWindow scrolledwindow1 GTK_POLICY_NEVER GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkText about_window_text 283 236 True False GtkHBox hbox123 False 0 0 False False GtkButton about_ok_button 8 True True True True clicked on_about_ok_button_clicked Tue, 19 Feb 2002 22:34:16 GMT OK GTK_RELIEF_NORMAL 0 True False GtkButton about_other_button 8 False True True clicked on_about_other_button_clicked Tue, 04 Jan 2005 14:53:58 GMT Other... GTK_RELIEF_NORMAL 0 True False GtkWindow aniso_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox16 False 0 GtkFrame frame12 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox17 False 0 GtkFrame frame13 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox18 False 0 GtkLabel label19 Show Anisotropic Atoms? GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkRadioButton show_aniso_yes_radiobutton True Yes False True sa 0 False False GtkRadioButton show_aniso_no_radiobutton True No False True sa 0 False False GtkFrame frame14 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox19 False 0 GtkLabel label20 Limit Display Radius of Anisotropic Atoms? GTK_JUSTIFY_CENTER False 0.5 0.5 6 0 2 False False GtkFrame frame15 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox20 False 0 GtkRadioButton limit_display_radius_yes_radiobutton True Yes False True laa 0 False False GtkRadioButton limit_display_radius_no_radiobutton True No False True laa 0 False False GtkFrame frame16 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox21 False 0 GtkLabel label21 Display Limit Radius GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkHBox hbox11 5 False 0 0 True True GtkEntry limit_display_radius_entry True True True 0 3 True True GtkLabel label22 A GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 3 False False GtkFrame frame17 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox22 False 0 GtkLabel label23 Probability GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 2 False False GtkHBox hbox12 False 0 0 True True GtkHScale aniso_probability_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 6 True True GtkLabel label24 % GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 3 False False GtkHBox hbox150 2 True 0 1 False False GtkButton show_aniso_ok_button True True True True clicked on_show_aniso_ok_button_clicked Sun, 24 Feb 2002 23:53:43 GMT Apply GTK_RELIEF_NORMAL 0 False False GtkButton show_aniso_close_button True True clicked on_show_aniso_close_button_clicked Sun, 24 Jun 2007 13:51:47 GMT Close GTK_RELIEF_NORMAL 0 False False GtkWindow smooth_scroll_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox23 False 0 GtkLabel label25 Recentring Smooth Scrolling GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 5 False False GtkVBox vbox24 False 0 0 True True GtkFrame frame18 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox25 False 0 GtkRadioButton smooth_scroll_yes_radiobutton True Yes False True ss 0 False False GtkRadioButton smooth_scroll_no_radiobutton True No False True ss 0 False False GtkFrame frame19 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox13 False 0 GtkLabel label26 Number of Steps: GTK_JUSTIFY_CENTER False 0.5 0.5 0 10 5 False False GtkEntry smooth_scroll_steps_entry 30 True True True 0 10 True True GtkFrame frame20 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox14 False 0 GtkLabel label27 Do Not Scroll for distances more than: GTK_JUSTIFY_CENTER False 0.5 0.5 0 4 5 False False GtkEntry smooth_scroll_limit_entry True True True 0 7 True True GtkLabel label28 A GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 5 False False GtkButton smooth_scrolling_window_ok_button 5 True True True True clicked on_smooth_scrolling_window_ok_button_clicked Sun, 03 Mar 2002 02:42:41 GMT OK GTK_RELIEF_NORMAL 0 False False GtkWindow font_size_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox26 False 0 GtkLabel label29 Atom Label Font Size GTK_JUSTIFY_CENTER False 0.5 0.5 4 2 5 False False GtkFrame frame22 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox27 False 0 GtkRadioButton font_size_small_radiobutton True Small False True fs 0 False False GtkRadioButton font_size_medium_radiobutton True Medium False True fs 0 False False GtkRadioButton font_size_large_radiobutton True Large False True fs 0 False False GtkFrame frame21 5 0 GTK_SHADOW_ETCHED_IN 0 True True GtkButton font_size_ok_button True True True True clicked on_font_size_ok_button_clicked Sun, 03 Mar 2002 05:40:03 GMT OK GTK_RELIEF_NORMAL GtkFileSelection map_name_fileselection1 10 destroy on_map_name_fileselection1_destroy Fri, 25 Aug 2006 09:26:03 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button ok_button_map_name True True clicked on_ok_button_map_name_clicked Wed, 12 Jun 2002 16:29:44 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button cancel_button_map_name True True clicked on_cancel_button_map_name_clicked Wed, 12 Jun 2002 16:29:54 GMT Cancel GTK_RELIEF_NORMAL GtkWindow phs_info_box GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox29 False 0 GtkFrame frame26 5 0 GTK_SHADOW_ETCHED_IN 2 True True GtkLabel label36 .phs files additionally need cell and symmetry. We need a pdb file to assign them. (Note that this will not read coordinates - just the cell and symmetry) GTK_JUSTIFY_CENTER False 0.5 0.5 5 5 GtkFrame frame27 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox19 False 0 GtkButton phs_info_ok_button 6 True True True True clicked on_phs_info_ok_button_clicked Mon, 12 Aug 2002 08:21:49 GMT OK GTK_RELIEF_NORMAL 5 True True GtkButton phs_info_cancel_button 6 True clicked on_phs_info_cancel_button_clicked Mon, 12 Aug 2002 08:21:57 GMT Cancel GTK_RELIEF_NORMAL 5 True True GtkFileSelection phs_coordinates_fileselection 10 destroy on_phs_coordinates_fileselection_destroy Fri, 25 Aug 2006 09:26:21 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button ok_phs_coord_button True True clicked on_ok_phs_coord_button_clicked Mon, 12 Aug 2002 22:00:01 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button cancel_phs_coord_button True True clicked on_cancel_phs_coord_button_clicked Mon, 12 Aug 2002 22:00:10 GMT Cancel GTK_RELIEF_NORMAL GtkWindow display_control_window_glade 390 250 destroy on_display_control_window_glade_destroy Thu, 10 Oct 2002 19:47:06 GMT configure_event on_display_control_window_glade_configure_event Tue, 15 Aug 2006 15:19:20 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox30 4 False 0 GtkVPaned display_control_vpaned 10 6 0 True True GtkVBox paned_maps_vbox False 0 True True GtkHBox hbox151 2 False 0 0 False False GtkLabel label257 Maps GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkToggleButton display_control_all_maps_togglebutton True toggled on_display_control_all_maps_togglebutton_toggled Tue, 28 Aug 2007 09:42:23 GMT All GTK_RELIEF_NORMAL True 0 False False GtkScrolledWindow scrolledwindow21 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport13 GTK_SHADOW_IN GtkVBox display_map_vbox False 0 GtkVBox paned_molecules_vbox False 0 True True GtkHBox hbox152 2 False 0 0 False False GtkLabel label258 Molecules GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkToggleButton display_control_all_models_togglebutton True toggled on_display_control_all_models_togglebutton_toggled Tue, 28 Aug 2007 09:44:29 GMT All GTK_RELIEF_NORMAL True 0 False False GtkScrolledWindow scrolledwindow22 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport14 GTK_SHADOW_IN GtkVBox display_molecule_vbox False 0 GtkFrame frame32 2 36 True True True True 0 GTK_SHADOW_ETCHED_IN 2 False True GtkButton display_control_ok_button True clicked on_display_control_ok_button_clicked Thu, 10 Oct 2002 17:17:42 GMT OK GTK_RELIEF_NORMAL GtkWindow goto_atom_window destroy on_goto_atom_window_destroy Fri, 16 May 2003 13:27:17 GMT configure_event on_goto_atom_window_configure_event Tue, 15 Aug 2006 14:59:24 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox33 False 0 GtkFrame frame30 0 GTK_SHADOW_ETCHED_IN 0 False True GtkVBox vbox34 False 0 GtkLabel label39 Define an Atom for Centering: GTK_JUSTIFY_CENTER False 0.5 0.5 6 5 6 False False GtkVBox vbox35 False 0 0 False True GtkHBox hbox23 3 False 0 0 False True GtkOptionMenu go_to_atom_molecule_optionmenu 2 True 0 0 False False GtkLabel label40 Molecule GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkTable table5 2 3 2 False 0 0 0 True True GtkHBox hbox24 2 False 0 0 1 0 1 0 0 True True False False True True GtkEntry go_to_atom_chain_entry 60 True key_press_event on_go_to_atom_chain_entry_key_press_event Wed, 09 Jul 2003 17:09:17 GMT True True 0 0 False False GtkLabel label41 Chain GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkHBox hbox25 2 False 0 0 1 1 2 0 0 False True False False True True GtkEntry go_to_atom_residue_entry 60 True key_press_event on_go_to_atom_residue_entry_key_press_event Wed, 09 Jul 2003 17:09:39 GMT True True 0 0 False True GtkLabel label42 Residue Number GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkHBox hbox26 2 False 0 0 1 2 3 0 0 False True False False True True GtkEntry go_to_atom_atom_name_entry 60 True key_press_event on_go_to_atom_atom_name_entry_key_press_event Wed, 09 Jul 2003 17:09:49 GMT True True 0 0 False True GtkLabel label43 Atom Name GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkButton update_go_to_atom_from_current_position_button True clicked on_update_go_to_atom_from_current_position_button_clicked Wed, 28 Mar 2007 22:43:13 GMT Update from Current Postion GTK_RELIEF_NORMAL 1 2 0 1 0 0 False False False False True False GtkHSeparator hseparator1 0 False True GtkButton go_to_atom_next_residue_button 8 True clicked on_go_to_atom_next_residue_button_clicked Tue, 20 Aug 2002 11:25:05 GMT Next Residue GTK_RELIEF_NORMAL 0 False False GtkButton go_to_atom_previous_residue_button 8 True clicked on_go_to_atom_previous_residue_button_clicked Tue, 20 Aug 2002 12:19:26 GMT Previous Residue GTK_RELIEF_NORMAL 0 False False GtkFrame frame59 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox go_to_atom_model_view_hbox False 0 GtkScrolledWindow go_to_atom_residue_scrolledwindow 113 172 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True Placeholder GtkScrolledWindow go_to_atom_atom_scrolledwindow 150 172 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True Placeholder GtkHBox hbox22 False 0 0 False True GtkButton go_to_atom_apply_button 3 True True True clicked on_go_to_atom_apply_button_clicked Tue, 01 Apr 2003 19:55:19 GMT Apply GTK_RELIEF_NORMAL 5 True True GtkButton go_to_atom_cancel_button 3 True True clicked on_go_to_atom_cancel_button_clicked Fri, 16 Aug 2002 18:32:42 GMT Close GTK_RELIEF_NORMAL 6 True True GtkWindow skeletonization_box_radius_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox36 False 0 GtkLabel label46 Skeleton Box Size GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 8 False False GtkHBox hbox28 False 0 6 True True GtkLabel label44 Size GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 4 False False GtkEntry skeleton_box_size_entry 60 True True True 0 0 False True GtkLabel label45 Angstoms GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkFrame frame31 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox27 False 0 GtkButton skel_box_radius_ok_button 4 True True True clicked on_skel_box_radius_ok_button_clicked Tue, 24 Sep 2002 09:54:57 GMT OK GTK_RELIEF_NORMAL 0 True True GtkButton skel_box_radius_cancel_button 4 True True clicked on_skel_box_radius_cancel_button_clicked Tue, 24 Sep 2002 09:55:02 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkWindow skeletonization_level_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox37 False 0 GtkLabel label47 Skeletonization Level GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkHBox hbox29 False 0 0 True True GtkLabel label48 Level GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkEntry skeleton_level_entry 68 True True True 0 0 False True GtkLabel label49 electrons/A^3 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkHBox hbox30 6 False 0 0 True True GtkButton skeletonization_level_ok_button True True True clicked on_skeletonization_level_ok_button_clicked Tue, 24 Sep 2002 09:55:10 GMT OK GTK_RELIEF_NORMAL 0 True True GtkButton skeletonization_level_apply_button True True clicked on_skeletonization_level_apply_button_clicked Tue, 24 Sep 2002 09:55:20 GMT Apply GTK_RELIEF_NORMAL 0 True True GtkButton skeletonization_level_cancel_button True True clicked on_skeletonization_level_cancel_button_clicked Tue, 24 Sep 2002 09:55:33 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkWindow rotation_centre_cube_size_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox38 False 0 GtkLabel label50 Rotation Centre Cube Size GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 5 False False GtkHBox hbox31 False 0 2 True True GtkLabel label51 Size: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 7 False False GtkEntry rotation_centre_cube_size_entry 66 True True True 0 0 True True GtkLabel label52 Angstroems GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkButton rotation_centre_size_ok_button 6 True True True True clicked on_rotation_centre_size_ok_button_clicked Tue, 15 Oct 2002 00:18:13 GMT OK GTK_RELIEF_NORMAL 0 True True GtkWindow phs_cell_choice_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox39 False 0 GtkLabel label67 Choose a Symmetry and Cell for the Phases file GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 6 False False GtkVBox phs_cell_chooser_vbox False 0 0 True True Placeholder Placeholder Placeholder GtkHBox hbox32 6 False 0 0 True True GtkButton phs_cell_choice_ok_button True True True clicked on_phs_cell_choice_ok_button_clicked Tue, 29 Oct 2002 16:30:56 GMT OK GTK_RELIEF_NORMAL 0 True True GtkButton phs_cell_choice_cancel_button True True clicked on_phs_cell_choice_cancel_button_clicked Tue, 29 Oct 2002 19:23:24 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkWindow accession_code_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkFrame frame34 7 0 GTK_SHADOW_ETCHED_IN GtkVBox vbox40 False 0 GtkLabel label69 PDB Accession Code: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry accession_code_entry True key_press_event on_accession_code_entry_key_press_event Fri, 14 Feb 2003 05:15:16 GMT True True 0 2 False False GtkWindow dynarama_window 2 destroy on_dynarama_window_destroy Tue, 08 Jun 2004 12:41:45 GMT configure_event on_dynarama_window_configure_event Sun, 20 Aug 2006 17:53:27 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox dynarama_vbox False 0 GtkLabel dynarama_label Ramachandran Plot GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 3 False False GtkScrolledWindow dynarama_scrolledwindow GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport dynarama_viewport GTK_SHADOW_IN Placeholder GtkFrame rama_stats_frame 6 0 GTK_SHADOW_ETCHED_IN 2 False False GtkVBox rama_stats_vbox 4 False 0 GtkLabel rama_stats_label_1 In Prefered Regions: 239 (85.02%) GTK_JUSTIFY_CENTER False 0 0.5 6 0 0 False False GtkLabel rama_stats_label_2 In Allowed Regions: 365 (23.45%) GTK_JUSTIFY_CENTER False 0 0.5 6 0 0 False False GtkLabel rama_stats_label_3 Outliers: 34 (0.23%) GTK_JUSTIFY_CENTER False 0 0.5 6 0 0 False False GtkHBox hbox65 False 0 0 False False GtkButton dynarama_ok_button 6 True True True True clicked on_dynarama_ok_button_clicked Tue, 19 Nov 2002 21:03:04 GMT OK GTK_RELIEF_NORMAL 0 True True GtkButton dynarama_cancel_button 6 True True clicked on_dynarama_cancel_button_clicked Tue, 18 Nov 2003 12:51:13 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkWindow dynarama_properties_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox2 False 0 GtkNotebook GnomePropertyBox:notebook notebook2 True True True GTK_POS_TOP False 2 2 False 0 True True GtkVBox vbox3 False 0 GtkCheckButton checkbutton1 True Labels True True 0 False False GtkCheckButton checkbutton2 True Sticky Labels True True 0 False False Placeholder GtkLabel Notebook:tab label4 Labels GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 GtkHSeparator hseparator1 0 True True GtkButton dynarama_properties_ok_button True True True OK GTK_RELIEF_NORMAL 0 False False GtkWindow python_window 10 GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkVBox vbox41 False 0 GtkScrolledWindow scrolledwindow4 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkText python_window_text True False GtkEntry python_window_entry 220 True True True 0 5 False False GtkDialog find_ligand_dialog 2 450 GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox2 False 0 GtkHBox Dialog:action_area dialog-action_area2 6 True 5 0 False True GTK_PACK_END GtkHBox hbox35 True 0 0 True True GtkHBox hbox36 False 0 0 True True GtkButton find_ligand_ok_button True True True True clicked on_find_ligand_ok_button_clicked Fri, 03 Jan 2003 11:18:55 GMT Find 'em! GTK_RELIEF_NORMAL 2 True True GtkButton button4 True True clicked on_find_ligand_cancel_button_clicked Fri, 03 Jan 2003 11:18:47 GMT Cancel GTK_RELIEF_NORMAL 2 True True GtkVBox vbox44 False 0 0 True True GtkVBox vbox45 5 False 0 0 False True GtkLabel label73 Select Map: GTK_JUSTIFY_LEFT False 0.5 0.5 5 0 0 False False GtkFrame frame35 0 GTK_SHADOW_ETCHED_IN 0 True True GtkScrolledWindow find_ligands_map_scrolledwindow 70 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS GtkViewport viewport17 GTK_SHADOW_IN GtkVBox find_ligand_map_vbox False 0 Placeholder Placeholder GtkVBox vbox46 5 False 0 0 True True GtkLabel label74 Select Protein (Masks Map): GTK_JUSTIFY_CENTER False 0.5 0.5 5 0 0 False False GtkFrame frame36 0 GTK_SHADOW_ETCHED_IN 0 True True GtkScrolledWindow find_ligands_coords_scrolledwindow 100 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS GtkViewport viewport15 GTK_SHADOW_IN GtkVBox find_ligand_protein_vbox False 0 Placeholder Placeholder GtkFrame frame108 5 Mask Waters? 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox vbox112 False 0 GtkRadioButton find_ligand_mask_waters_yes_radiobutton True Treat waters like protein (mask) atoms False True mask_waters 0 False False GtkRadioButton find_ligand_mask_waters_no_radiobutton True Ignore waters for mask False True mask_waters 0 False False GtkVBox vbox47 5 False 0 0 True True GtkLabel label75 Select Ligands to Search for: GTK_JUSTIFY_CENTER False 0.5 0.5 5 0 0 False False GtkFrame frame37 0 GTK_SHADOW_ETCHED_IN 0 True True GtkScrolledWindow find_ligands_ligands_scrolledwindow 100 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS GtkViewport viewport16 GTK_SHADOW_IN GtkVBox find_ligand_ligands_vbox False 0 Placeholder Placeholder GtkFrame frame200 2 Where to Search? 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox206 False 0 GtkRadioButton find_ligands_search_all_radiobutton True Everywhere True True find_ligands_search 0 False False GtkRadioButton find_ligands_search_here_radiobutton True Right Here False True find_ligands_search 0 False False GtkFrame frame85 5 Sigma Level 0 GTK_SHADOW_ETCHED_IN 0 False False GtkHBox hbox79 False 0 GtkEntry find_ligand_sigma_level_entry 60 True True True 0 0 False True GtkLabel label145 sigma GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame ligand_expert_frame Expert Options 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox166 False 0 GtkHBox hbox131 False 0 0 True True GtkLabel label261 Number of Conformers to Search: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry ligand_n_samples_entry 50 True True True 0 0 False False GtkHBox hbox132 False 0 0 True True GtkLabel label262 Search Number of Top Sites: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry ligand_n_top_ligands_entry 51 True True True 0 0 False False Placeholder GtkDialog find_ligand_many_atoms_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox3 False 0 GtkHBox Dialog:action_area dialog-action_area3 10 True 5 0 False True GTK_PACK_END GtkHBox hbox37 False 0 0 True True GtkButton find_ligand_many_atoms_continue_button 2 True clicked on_find_ligand_many_atoms_continue_button_clicked Sun, 05 Jan 2003 05:54:01 GMT Continue GTK_RELIEF_NORMAL 6 True True GtkButton find_ligand_many_atoms_cancel_button 2 True clicked on_find_ligand_many_atoms_cancel_button_clicked Sun, 05 Jan 2003 05:55:05 GMT Cancel GTK_RELIEF_NORMAL 6 True True GtkFrame frame38 6 0 GTK_SHADOW_ETCHED_IN 5 False False GtkLabel label76 One or more of the selected ligands has unexpectedly many atoms. This is an opportunity for you to reflect on that... Do you want to continue? GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 GtkDialog model_refine_dialog destroy on_model_refine_dialog_destroy Thu, 23 Oct 2003 14:06:23 GMT configure_event on_model_refine_dialog_configure_event Tue, 15 Aug 2006 15:18:39 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True False True GtkVBox Dialog:vbox model_fit_refine_dialog_vbox False 0 GtkHBox Dialog:action_area dialog-action_area4 10 True 5 0 False False GTK_PACK_END GtkButton model_refine_dialog_dismiss_button True True True True clicked on_model_refine_dialog_dismiss_button_clicked Mon, 12 May 2003 14:21:49 GMT Close GTK_RELIEF_NORMAL 0 False False GtkFrame frame39 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox model_fit_refine_vbox 6 False 0 GtkButton model_refine_dialog_refine_params_button 1 Set Parameters for fitting, refinement, regularization, etc. True clicked on_model_refine_dialog_refine_params_button_clicked Thu, 15 May 2003 12:45:41 GMT Refine/Regularize Control... GTK_RELIEF_NORMAL 0 False False GtkButton model_refine_dialog_map_select_button 1 Select the map that will be used for refinement, rigid body refinement, terminal residue fit and autofitting True clicked on_model_refine_dialog_map_select_button_clicked Wed, 24 Dec 2003 15:57:30 GMT Select Map... GTK_RELIEF_NORMAL 0 False False GtkHSeparator hseparator5 3 False False GtkToggleButton model_refine_dialog_refine_togglebutton 1 30 Real Space Refinement: Improve geometry and fit to map True toggled on_model_refine_dialog_refine_togglebutton_toggled Wed, 14 May 2003 16:23:52 GMT Real Space Refine Zone GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_regularize_zone_togglebutton 1 Idealize model geometry True toggled on_model_refine_dialog_regularize_togglebutton_toggled Thu, 15 May 2003 12:45:01 GMT Regularize Zone GTK_RELIEF_NORMAL False 0 False False GtkButton model_refine_dialog_fix_atoms_button 1 True clicked on_model_refine_dialog_fix_atoms_button_clicked Fri, 13 Jun 2008 09:08:51 GMT Fix Atoms GTK_RELIEF_NORMAL 0 False False GtkToggleButton model_refine_dialog_rigid_body_togglebutton 1 Rearrange to find the name of a popular health club True toggled on_model_refine_dialog_rigid_body_togglebutton_toggled Thu, 15 May 2003 12:45:48 GMT Rigid Body Fit Zone GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_rot_trans_togglebutton 1 Click and Drag across the rotation/translation buttons. Use Ctrl-click to move a single atom [but make sure that you have graphics window focus!] True toggled on_model_refine_dialog_rot_trans_togglebutton_toggled Sun, 15 Jun 2003 16:27:10 GMT Rotate/Translate Zone GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_auto_fit_rotamer_togglebutton 1 Click on an atom in a residue to find the best fit rotamer True toggled on_model_refine_dialog_auto_fit_rotamer_togglebutton_toggled Sun, 05 Oct 2003 13:31:28 GMT Auto Fit Rotamer GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_rotamer_togglebutton 1 Select Different Conformations for a Residue Sidechan True toggled on_model_refine_dialog_rotamer_togglebutton_toggled Thu, 03 Jul 2003 16:07:33 GMT Rotamers... GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_edit_chi_angles_togglebutton 1 Edit the Chi angles (torsions) of an amino acid residue "by hand" (by mouse, that is) True toggled on_model_refine_dialog_edit_chi_angles_togglebutton_toggled Mon, 24 Nov 2003 20:26:38 GMT Edit Chi Angles GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_torsion_general_togglebutton 1 True toggled on_model_refine_dialog_torsion_general_togglebutton_toggled Thu, 27 Dec 2007 22:01:09 GMT Torsion General GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_pepflip_togglebutton 1 Peptide flip True toggled on_model_refine_dialog_pepflip_togglebutton_toggled Thu, 22 May 2003 16:03:21 GMT Flip Peptide GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_do_180_degree_sidechain_flip_togglebutton 1 Flip the last chi angle of the sidechain by 180 degrees True toggled on_model_refine_dialog_do_180_degree_sidechain_flip_togglebutton_toggled Tue, 16 Aug 2005 13:46:17 GMT toggled on_model_refine_dialog_do_180_degree_sidechain_flip_togglebutton_toggled Tue, 16 Aug 2005 13:46:20 GMT Sidechain180 Degree Flip GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_edit_phi_psi_togglebutton 1 False True toggled on_model_refine_dialog_edit_phi_psi_togglebutton_toggled Mon, 17 Nov 2003 19:11:54 GMT Edit Phi/Psi... GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_edit_backbone_torsions_togglebutton 1 Change Residue's Phi and Psi True toggled on_model_refine_dialog_edit_backbone_torsions_button_toggled Tue, 02 Dec 2003 03:59:09 GMT Edit Backbone Torsions GTK_RELIEF_NORMAL False 0 False False GtkHSeparator hseparator6 3 False False GtkToggleButton model_refine_dialog_mutate_auto_fit_togglebutton 1 Where "Fit" means fit to the Selected Map True toggled on_model_refine_dialog_mutate_auto_fit_togglebutton_toggled Tue, 28 Oct 2003 15:59:47 GMT Mutate & Auto Fit... GTK_RELIEF_NORMAL False 0 False False GtkToggleButton model_refine_dialog_mutate_togglebutton 1 Mutate amino acid residues or nucleotides [no crystallographic map fitting is happens] True toggled on_model_refine_dialog_mutate_togglebutton_toggled Sat, 05 Jul 2003 15:48:24 GMT Simple Mutate... GTK_RELIEF_NORMAL False 0 False False GtkButton model_refine_dialog_find_waters_button 1 Solvate... True clicked on_model_refine_dialog_find_waters_button_clicked Sat, 01 Nov 2003 22:58:16 GMT Find Waters... GTK_RELIEF_NORMAL 0 False False GtkToggleButton model_refine_dialog_fit_terminal_residue_togglebutton 1 30 [You need a map to do this] Create a new residue at the C or N terminus. The angles are selected at random sample from the phi/psi probability distribution (then fitted to the map), so if at first you don't succeed, give it another bash... True toggled on_model_refine_dialog_fit_terminal_residue_togglebutton_toggled Sun, 08 Jun 2003 12:59:07 GMT Add Terminal Residue... GTK_RELIEF_NORMAL False 0 False False GtkButton model_refine_dialog_add_alt_conf_button 1 Add Alternate (Alternative) Conformation to a Residue True clicked on_model_refine_dialog_add_alt_conf_button_clicked Fri, 06 Feb 2004 02:56:33 GMT Add Alt Conf... GTK_RELIEF_NORMAL 0 False False Placeholder Placeholder GtkButton model_refine_dialog_pointer_atom_button 1 Put an atom at current pink pointer position True clicked on_model_refine_dialog_pointer_atom_button_clicked Thu, 17 Jul 2003 14:49:36 GMT Place Atom At Pointer GTK_RELIEF_NORMAL 0 False False Placeholder GtkHSeparator hseparator8 3 True True GtkButton model_refine_dialog_clear_pending_button 1 True clicked on_model_refine_dialog_clear_pending_button_clicked Mon, 22 Sep 2003 16:34:28 GMT Clear Pending Picks GTK_RELIEF_NORMAL 0 False False GtkButton model_refine_dialog_delete_button 1 Delete Residue or Atom True clicked on_model_refine_dialog_delete_button_clicked Tue, 24 Jun 2003 15:42:09 GMT Delete... GTK_RELIEF_NORMAL 0 False False GtkButton model_refine_dialog_undo_button 1 30 True clicked on_model_refine_dialog_undo_button_clicked Mon, 22 Sep 2003 06:15:56 GMT Undo GTK_RELIEF_NORMAL 0 False False GtkButton model_refine_dialog_redo_button 1 False True clicked on_model_refine_dialog_redo_button_clicked Thu, 20 Nov 2003 22:56:40 GMT Redo GTK_RELIEF_NORMAL 0 False False GtkHSeparator hseparator7 3 False False GtkButton model_refine_dialog_refmac_button 1 True clicked on_model_refine_dialog_refmac_button_clicked Fri, 05 Sep 2003 20:12:06 GMT Run Refmac... GTK_RELIEF_NORMAL 0 False False GtkDialog rotate_translate_obj_dialog destroy on_rotate_translate_obj_dialog_destroy Wed, 24 Mar 2004 12:58:58 GMT configure_event on_rotate_translate_obj_dialog_configure_event Tue, 15 Aug 2006 16:16:24 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox6 False 0 GtkHBox Dialog:action_area dialog-action_area6 10 True 5 0 False True GTK_PACK_END GtkHBox hbox40 False 0 0 True True GtkButton rotate_translate_obj_ok_button 2 True True True True clicked on_rotate_translate_obj_ok_button_clicked Sun, 15 Jun 2003 16:57:00 GMT OK GTK_RELIEF_NORMAL 2 True True GtkButton rotate_translate_obj_cancel_button True True clicked on_rotate_translate_obj_cancel_button_clicked Sun, 15 Jun 2003 20:59:59 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkFrame frame40 6 170 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox49 False 0 GtkFrame frame90 2 X translation 0 GTK_SHADOW_ETCHED_IN 0 False False GtkHScale rotate_translate_obj_xtrans_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkFrame frame91 2 Y translation 0 GTK_SHADOW_ETCHED_IN 0 False False GtkHScale rotate_translate_obj_ytrans_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkFrame frame92 2 Z translation 0 GTK_SHADOW_ETCHED_IN 0 False False GtkHScale rotate_translate_obj_ztrans_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkFrame frame93 2 X rotate 0 GTK_SHADOW_ETCHED_IN 0 False False GtkHScale rotate_translate_obj_xrot_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkFrame frame94 2 Y rotate 0 GTK_SHADOW_ETCHED_IN 0 False False GtkHScale rotate_translate_obj_yrot_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkFrame frame95 2 Z rotate 0 GTK_SHADOW_ETCHED_IN 0 False False GtkHScale rotate_translate_obj_zrot_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkDialog save_coords_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox7 False 0 GtkHBox Dialog:action_area dialog-action_area7 10 True 5 0 False True GTK_PACK_END GtkButton save_coords_dialog_save_button 6 True True True clicked on_save_coords_dialog_save_button_clicked Wed, 14 May 2003 09:17:14 GMT Select Filename... GTK_RELIEF_NORMAL 0 True True GtkFrame frame41 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox50 False 0 GtkLabel label78 Select Molecule Number to Save: GTK_JUSTIFY_CENTER False 0.5 0.5 60 9 3 False False GtkOptionMenu save_coords_optionmenu 1 True 0 0 False False GtkFileSelection save_coords_fileselection1 10 Saved File type: By extension destroy on_save_coords_fileselection1_destroy Fri, 25 Aug 2006 09:26:47 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button save_coord_ok_button True True clicked on_save_coord_ok_button_clicked Wed, 14 May 2003 09:22:08 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button save_coords_cancel_button True True clicked on_save_coords_cancel_button_clicked Wed, 14 May 2003 09:22:14 GMT Cancel GTK_RELIEF_NORMAL GtkDialog refine_params_dialog destroy on_refine_params_dialog_destroy Fri, 26 Jan 2007 19:22:00 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox8 6 False 0 GtkHBox Dialog:action_area dialog-action_area8 10 True 5 0 False True GTK_PACK_END GtkButton refine_params_dialog_ok_button True True True True clicked on_refine_params_dialog_ok_button_clicked Thu, 15 May 2003 17:29:12 GMT OK GTK_RELIEF_NORMAL 0 True True GtkFrame frame42 2 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox51 False 0 Placeholder GtkVBox vbox52 5 False 0 0 True True GtkLabel label281 False LINK TORSION RESTRAINTS CURRENTLY DON'T WORK! GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkLabel label79 For Regularization and Refinement: GTK_JUSTIFY_LEFT False 0 0.5 0 0 4 False False GtkVBox vbox60 False 0 0 False False GtkCheckButton refine_params_use_torsions_checkbutton Optimize torsion angles too True toggled on_refine_params_use_torsions_checkbutton_toggled Thu, 29 May 2003 10:13:51 GMT Use Torsion Restraints False True 0 False False GtkVBox phi_psi_restraints_vbox False False 0 0 True True GtkHBox hbox140 False 0 0 True True GtkLabel label279 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton refine_params_use_peptide_torsions_checkbutton True toggled on_refine_params_use_peptide_torsions_checkbutton_toggled Tue, 11 Apr 2006 18:30:20 GMT Use Phi/Psi Restraints False True 0 False False GtkVBox peptide_torsions_restraints_vbox False False 0 0 True True GtkHBox hbox137 False 0 0 True True GtkLabel label276 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkRadioButton refine_params_use_helix_peptide_torsions_radiobutton True toggled on_refine_params_use_helix_peptide_torsions_radiobutton_toggled Tue, 11 Apr 2006 18:30:27 GMT Use Alpha Helix Restraints False True link-torsion-restraints 0 False False GtkHBox hbox138 False 0 0 True True GtkLabel label277 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkRadioButton refine_params_use_beta_strand_peptide_torsions_radiobutton True toggled on_refine_params_use_beta_strand_peptide_torsions_radiobutton_toggled Tue, 11 Apr 2006 18:30:32 GMT Use Beta Strand Restraints False True link-torsion-restraints 0 False False GtkHBox hbox139 False 0 0 True True GtkLabel label278 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkRadioButton refine_params_use_ramachandran_goodness_torsions_radiobutton True toggled on_refine_params_use_ramachandran_goodness_torsions_radiobutton_toggled Tue, 11 Apr 2006 18:30:37 GMT Restrain to Ramachandran Goodness False True link-torsion-restraints 0 False False Placeholder Placeholder GtkHBox hbox141 False False 0 0 False False GtkLabel label280 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton refine_params_use_peptide_omegas_checkbutton False True toggled on_refine_params_use_peptide_omegas_checkbutton_toggled Tue, 11 Apr 2006 18:35:14 GMT Use Omega Restraints False True 0 False False GtkCheckButton refine_params_use_initial_pos_checkbutton 2 False False Stops regularization wandering off [non-active] True toggled on_refine_params_use_initial_pos_checkbutton_toggled Thu, 29 May 2003 10:13:44 GMT Use Initial Position Restraints False True 0 False False GtkFrame frame174 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox sec_struct_restraints_vbox False 0 GtkRadioButton sec_str_rest_no_rest_radiobutton True toggled on_sec_str_rest_no_rest_radiobutton_toggled Fri, 08 Dec 2006 07:02:59 GMT No Secondary Structure Restraints False True ss_rest_gr 0 False False GtkRadioButton sec_str_rest_helix_rest_radiobutton True toggled on_sec_str_rest_helix_rest_radiobutton_toggled Fri, 08 Dec 2006 07:03:04 GMT Alpha Helix Restraints False True ss_rest_gr 0 False False GtkRadioButton sec_str_rest_strand_rest_radiobutton True toggled on_sec_str_rest_strand_rest_radiobutton_toggled Fri, 08 Dec 2006 07:03:08 GMT Beta Strand Restraints False True ss_rest_gr 0 False False GtkCheckButton refine_params_use_ramachandran_goodness_torsions_checkbutton True toggled on_refine_params_use_ramachandran_goodness_torsions_checkbutton_toggled Fri, 01 Aug 2008 14:52:42 GMT Ramachandran Restraints False True 0 False False GtkDialog accept_reject_refinement_dialog destroy on_accept_reject_refinement_dialog_destroy Thu, 08 Dec 2005 09:29:58 GMT configure_event on_accept_reject_refinement_dialog_configure_event Sat, 19 Aug 2006 11:27:12 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox9 False 0 GtkHBox Dialog:action_area dialog-action_area9 10 True 5 0 False True GTK_PACK_END GtkHBox hbox41 36 False 0 0 True True GtkButton accept_reject_refinement_accept_button True True True clicked on_accept_reject_refinement_accept_button_clicked Thu, 29 Jan 2004 13:09:14 GMT OK GTK_RELIEF_NORMAL 6 True True GtkButton accept_reject_refinement_reject_button True True clicked on_accept_reject_refinement_reject_button_clicked Thu, 29 Jan 2004 13:09:21 GMT Reject GTK_RELIEF_NORMAL 6 True True GtkFrame frame129 6 0 GTK_SHADOW_ETCHED_IN 6 False False GtkVBox vbox193 False 0 GtkLabel chiral_centre_text_label GTK_JUSTIFY_CENTER False 0.06 0.5 16 2 0 False False GtkButton accept_reject_reverse_button 2 False True clicked on_accept_reject_reverse_button_clicked Fri, 28 Dec 2007 22:50:09 GMT Reverse GTK_RELIEF_NORMAL 0 False False GtkLabel extra_text_label GTK_JUSTIFY_LEFT False 0.06 0.5 16 0 2 False False Placeholder GtkLabel accept_dialog_accept_label_string Accept Refinement? GTK_JUSTIFY_LEFT False 7.45058e-09 0.5 25 8 0 False False GtkFrame accept_reject_lights_frame 0 GTK_SHADOW_ETCHED_IN 0 True True GtkTable refinement_lights_table 7 2 False 0 0 GtkFrame frame193 2 False 0 GTK_SHADOW_ETCHED_IN 0 1 0 1 0 0 True True False False True True GtkEventBox bonds_eventbox Placeholder GtkFrame frame194 2 False 0 GTK_SHADOW_ETCHED_IN 0 1 1 2 0 0 False True False False True True GtkEventBox angles_eventbox Placeholder GtkFrame frame195 2 False 0 GTK_SHADOW_ETCHED_IN 0 1 4 5 0 0 False True False False True True GtkEventBox chirals_eventbox Placeholder GtkFrame frame196 2 False 0 GTK_SHADOW_ETCHED_IN 0 1 5 6 0 0 False True False False True True GtkEventBox non_bonded_contacts_eventbox Placeholder GtkFrame frame197 2 False 0 GTK_SHADOW_ETCHED_IN 0 1 6 7 0 0 False True False False True True GtkEventBox rama_eventbox Placeholder GtkFrame frame198 2 False 0 GTK_SHADOW_ETCHED_IN 0 1 2 3 0 0 False True False False True True GtkEventBox torsions_eventbox Placeholder GtkFrame frame199 2 False 0 GTK_SHADOW_ETCHED_IN 0 1 3 4 0 0 False True False False True True GtkEventBox planes_eventbox Placeholder GtkLabel bonds_label False label310 GTK_JUSTIFY_CENTER False 0 0.5 0 0 1 2 0 1 0 0 False False False False True False GtkLabel angles_label False label311 GTK_JUSTIFY_CENTER False 0 0.5 0 0 1 2 1 2 0 0 False False False False True False GtkLabel torsions_label False label312 GTK_JUSTIFY_CENTER False 0 0.5 0 0 1 2 2 3 0 0 False False False False True False GtkLabel planes_label False label313 GTK_JUSTIFY_CENTER False 0 0.5 0 0 1 2 3 4 0 0 False False False False True False GtkLabel chirals_label False label314 GTK_JUSTIFY_CENTER False 0 0.5 0 0 1 2 4 5 0 0 False False False False True False GtkLabel non_bonded_contacts_label False label315 GTK_JUSTIFY_CENTER False 0 0.5 0 0 1 2 5 6 0 0 False False False False True False GtkLabel rama_label False rama GTK_JUSTIFY_CENTER False 0 0.5 0 0 1 2 6 7 0 0 False False False False True False GtkDialog find_waters_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox10 False 0 GtkHBox Dialog:action_area dialog-action_area10 10 True 5 0 False True GTK_PACK_END GtkHBox hbox43 False 0 0 True True GtkButton find_waters_ok_button True True True True clicked on_find_waters_ok_button_clicked Mon, 26 May 2003 18:04:12 GMT Find Waters GTK_RELIEF_NORMAL 0 True True GtkButton find_waters_cancel_button True True clicked on_find_waters_cancel_button_clicked Mon, 26 May 2003 18:04:20 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkVBox vbox54 False 0 0 True True GtkFrame frame44 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox find_waters_map_vbox 3 False 0 GtkLabel label85 Select Map: GTK_JUSTIFY_LEFT False 0.5 0.5 0 0 0 False False Placeholder GtkFrame frame45 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox find_waters_protein_vbox 3 False 0 GtkLabel label86 Select Protein (which Masks Map): GTK_JUSTIFY_LEFT False 0.5 0.5 0 0 0 False False Placeholder GtkFrame frame46 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox57 3 False 0 GtkLabel label87 Find Peaks above: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkHBox hbox44 False 0 0 True True GtkEntry find_waters_peak_level_entry 36 Note that this is sigma of the map after it has been masked by the protein. 1.8 sigma seems good for a 2Fo-Fc style map and about 3.0 for a difference map. True True True 0 6 False True GtkLabel label88 sigma GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame frame63 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox80 False 0 GtkLabel label108 Waters should be: GTK_JUSTIFY_CENTER False 0.03 0.5 0 2 0 False False GtkRadioButton water_mol_protein_mask_radiobutton True Added to Molecule that masks the map True True water_mol 0 False False GtkRadioButton water_mol_new_mol_radiobutton True A new "Waters" molecule False True water_mol 0 False False GtkDialog environment_distance_dialog 6 GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox11 False 0 GtkHBox Dialog:action_area dialog-action_area11 10 True 5 0 False True GTK_PACK_END GtkButton environment_distance_dialog_ok_button True True True True clicked on_environment_distance_dialog_ok_button_clicked Thu, 24 Jul 2003 11:57:31 GMT OK GTK_RELIEF_NORMAL 0 True True GtkVBox vbox58 False 0 0 True True GtkFrame frame48 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkCheckButton environment_distance_checkbutton True toggled on_environment_distance_checkbutton_toggled Thu, 24 Jul 2003 11:55:06 GMT Show Residue Environment? False True GtkFrame environment_distance_distances_frame 6 False 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox59 False 0 GtkLabel label89 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkHBox hbox46 False 0 0 True True GtkLabel label90 Min Distance GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry environment_distance_min_entry 32 True True True 0 0 True True GtkLabel label92 Angstroms GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkHBox hbox45 False 0 0 True True GtkLabel label91 Max Distance GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry environment_distance_max_entry 32 True True True 0 0 True True GtkLabel label93 Angstroms GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton environment_distance_label_atom_checkbutton False True toggled on_environment_distance_label_atom_checkbutton_toggled Fri, 18 Jul 2003 18:33:14 GMT Label Atom? False True 0 False False GtkFileSelection cif_dictionary_fileselection 10 GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button cif_dictionary_fileselection_ok_button True True clicked on_cif_dictionary_fileselection_ok_button_clicked Thu, 05 Jun 2003 14:32:41 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button cif_dictionary_fileselection_cancel_button True True clicked on_cif_dictionary_fileselection_cancel_button_clicked Thu, 05 Jun 2003 14:32:50 GMT Cancel GTK_RELIEF_NORMAL GtkWindow residue_type_chooser_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkFrame frame50 6 0 GTK_SHADOW_ETCHED_IN GtkVBox vbox62 5 False 0 GtkCheckButton residue_type_chooser_stub_checkbutton Change the residue type, but only put in the main-chain atoms and the CB True toggled on_residue_type_chooser_stub_checkbutton_toggled Sun, 24 Sep 2006 23:57:13 GMT Stub False True 0 False False GtkButton residue_type_chooser_ALA True clicked on_residue_type_chooser_ALA_clicked Thu, 12 Jun 2003 12:31:09 GMT ALA (A) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_ARG True clicked on_residue_type_chooser_ARG_clicked Thu, 12 Jun 2003 12:31:17 GMT ARG (R) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_ASN True clicked on_residue_type_chooser_ASN_clicked Thu, 12 Jun 2003 12:31:23 GMT ASN (N) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_ASP True clicked on_residue_type_chooser_ASP_clicked Thu, 12 Jun 2003 12:31:29 GMT ASP (D) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_CYS True clicked on_residue_type_chooser_CYS_clicked Thu, 12 Jun 2003 12:31:34 GMT CYS (C) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_GLN True clicked on_residue_type_chooser_GLN_clicked Thu, 12 Jun 2003 12:31:42 GMT GLN (Q) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_GLU True clicked on_residue_type_chooser_GLU_clicked Thu, 12 Jun 2003 12:31:47 GMT GLU (E) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_GLY True clicked on_residue_type_chooser_GLY_clicked Thu, 12 Jun 2003 12:31:53 GMT GLY (G) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_HIS True clicked on_residue_type_chooser_HIS_clicked Thu, 12 Jun 2003 12:31:59 GMT HIS (H) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_ILE Selino-MET True clicked on_residue_type_chooser_ILE_clicked Thu, 12 Jun 2003 12:32:04 GMT ILE (I) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_LEU True clicked on_residue_type_chooser_LEU_clicked Thu, 12 Jun 2003 12:32:09 GMT LEU (L) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_LYS True clicked on_residue_type_chooser_LYS_clicked Thu, 12 Jun 2003 12:32:13 GMT LYS (K) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_MET True clicked on_residue_type_chooser_MET_clicked Thu, 12 Jun 2003 12:32:18 GMT MET (M) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_MSE True clicked on_residue_type_chooser_MSE_clicked Fri, 08 Oct 2004 00:28:15 GMT MSE GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_PHE True clicked on_residue_type_chooser_PHE_clicked Thu, 12 Jun 2003 12:32:22 GMT PHE (F) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_PRO True clicked on_residue_type_chooser_PRO_clicked Thu, 12 Jun 2003 12:32:26 GMT PRO (P) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_SER True clicked on_residue_type_chooser_SER_clicked Thu, 12 Jun 2003 12:32:31 GMT SER (S) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_THR True clicked on_residue_type_chooser_THR_clicked Thu, 12 Jun 2003 12:32:35 GMT THR (T) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_TRP True clicked on_residue_type_chooser_TRP_clicked Thu, 12 Jun 2003 12:32:40 GMT TRP (W) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_TYR True clicked on_residue_type_chooser_TYR_clicked Thu, 12 Jun 2003 12:32:45 GMT TYR (Y) GTK_RELIEF_NORMAL 2 False False GtkButton residue_type_chooser_VAL True clicked on_residue_type_chooser_VAL_clicked Thu, 12 Jun 2003 12:32:49 GMT VAL (V) GTK_RELIEF_NORMAL 2 False False GtkFileSelection run_script_fileselection 10 GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button run_script_fileselection_ok_button True True clicked on_run_script_fileselection_ok_button_clicked Tue, 17 Jun 2003 15:59:39 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button run_script_fileselection_cancel_button True True clicked on_run_script_fileselection_cancel_button_clicked Tue, 17 Jun 2003 16:00:04 GMT Cancel GTK_RELIEF_NORMAL GtkDialog delete_item_dialog destroy on_delete_item_dialog_destroy Fri, 28 Jan 2005 17:22:27 GMT configure_event on_delete_item_dialog_configure_event Tue, 15 Aug 2006 15:19:40 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox12 False 0 GtkHBox Dialog:action_area dialog-action_area12 10 True 5 0 False True GTK_PACK_END GtkButton delete_item_cancel_button True clicked on_delete_item_cancel_button_clicked Tue, 24 Jun 2003 19:34:36 GMT Cancel GTK_RELIEF_NORMAL 0 False False GtkFrame frame51 6 0 GTK_SHADOW_ETCHED_IN 2 True True GtkVBox vbox63 False 0 GtkLabel label95 Delete What Item Type? GTK_JUSTIFY_CENTER False 0.5 0.5 0 6 0 False False GtkRadioButton delete_item_residue_radiobutton 3 True toggled on_delete_item_residue_radiobutton_toggled Tue, 24 Jun 2003 15:42:42 GMT Residue/Monomer True True delete_item 0 False False GtkRadioButton delete_item_water_radiobutton 3 True toggled on_delete_item_water_radiobutton_toggled Fri, 10 Jun 2005 02:07:11 GMT Water False True delete_item 0 False False GtkRadioButton delete_item_atom_radiobutton 3 True toggled on_delete_item_atom_radiobutton_toggled Tue, 24 Jun 2003 15:46:56 GMT Atom False True delete_item 0 False False GtkRadioButton delete_item_sidechain_radiobutton 3 True toggled on_delete_item_sidechain_radiobutton_toggled Sun, 24 Sep 2006 12:08:08 GMT Sidechain False True delete_item 0 False False GtkRadioButton delete_item_residue_hydrogens_radiobutton 3 True toggled on_delete_item_residue_hydrogens_radiobutton_toggled Tue, 08 Jun 2004 23:06:34 GMT Hydrogens in Residue False True delete_item 0 False False GtkRadioButton delete_item_residue_range_radiobutton 3 True toggled on_delete_item_residue_range_radiobutton_toggled Sun, 10 Apr 2005 11:25:55 GMT Delete Zone False True delete_item 0 False False GtkCheckButton delete_item_keep_active_checkbutton 8 For use with Multiple Deletes. When activated, deleting an item does not dismiss this dialog. (Has the same action as using Ctrl-Left Click) True toggled on_delete_item_keep_active_checkbutton_toggled Wed, 26 Jan 2005 11:38:26 GMT Keep Delete Active False True 0 False False GtkLabel label126 Now click on an atom (of the residue) that you wish to delete. GTK_JUSTIFY_CENTER False 0 0 0 0 0 False False GtkDialog close_molecule_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox13 False 0 GtkHBox Dialog:action_area dialog-action_area13 10 True 5 0 False True GTK_PACK_END GtkHBox hbox48 False 0 0 True True GtkButton close_molecule_close_button True True True True clicked on_close_molecule_close_button_clicked Tue, 24 Jun 2003 17:03:46 GMT Close Molecule GTK_RELIEF_NORMAL 2 True True GtkButton close_molecule_cancel_button True True clicked on_close_molecule_cancel_button_clicked Tue, 24 Jun 2003 17:03:51 GMT Cancel GTK_RELIEF_NORMAL 2 True True GtkVBox vbox64 False 0 0 True True GtkLabel label96 Choose Molecule/Map to Close: GTK_JUSTIFY_CENTER False 0.5 0.5 0 6 0 False False GtkFrame frame52 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkOptionMenu close_molecule_optionmenu True 0 GtkDialog residue_info_dialog destroy on_residue_info_dialog_destroy Fri, 24 Oct 2003 13:29:11 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox14 False 0 GtkHBox Dialog:action_area dialog-action_area14 10 True 5 0 False True GTK_PACK_END GtkHBox hbox49 False 0 0 True True GtkButton residue_info_ok_button True True True clicked on_residue_info_ok_button_clicked Mon, 30 Jun 2003 10:31:12 GMT Apply GTK_RELIEF_NORMAL 0 True True GtkButton residue_info_cancel_button True True clicked on_residue_info_cancel_button_clicked Mon, 30 Jun 2003 10:31:17 GMT Close GTK_RELIEF_NORMAL 0 True True GtkVBox vbox65 False 0 0 True True GtkLabel residue_info_residue_label Residue: GTK_JUSTIFY_CENTER False 0.5 0.5 2 6 6 False False GtkLabel label97 Atom Info: Occupancy Temperature Factor GTK_JUSTIFY_CENTER False 0.5 0.5 10 0 6 False False GtkFrame frame159 6 Master Atom 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox vbox164 False 0 GtkHBox hbox130 False 0 0 True True GtkLabel label260 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry residue_info_master_atom_occ_entry False True True True 0 3 True True GtkEntry residue_info_master_atom_b_factor_entry False True True True 0 3 True True GtkCheckButton residue_info_occ_apply_all_checkbutton 4 True toggled on_residue_info_occ_apply_all_checkbutton_toggled Wed, 08 Jun 2005 21:05:33 GMT Apply Occupancy to all atoms in residue? False True 0 False False GtkCheckButton residue_info_b_factor_apply_all_checkbutton True toggled on_residue_info_b_factor_apply_all_checkbutton_toggled Wed, 08 Jun 2005 21:05:40 GMT Apply Temperature Factor to all atoms in residue? False True 0 False False GtkScrolledWindow scrolledwindow23 220 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport18 GTK_SHADOW_IN GtkFrame frame53 6 0 GTK_SHADOW_ETCHED_IN GtkHBox residue_info_hbox False 0 GtkTable residue_info_atom_table 3 3 False 0 0 0 True True GtkDialog hints_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox15 False 0 GtkHBox Dialog:action_area dialog-action_area15 10 True 5 0 False True GTK_PACK_END GtkButton hints_dialog_ok_button True clicked on_hints_dialog_ok_button_clicked Mon, 30 Jun 2003 22:02:32 GMT OK GTK_RELIEF_NORMAL 0 True True GtkScrolledWindow scrolledwindow5 6 GTK_POLICY_NEVER GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkText hints_text 376 217 True False Left-Mouse: Rotate View Ctrl Left-Mouse Drag: Moves around view Shift Left-Mouse: Label Atom Right-Mouse Drag: Zoom in and out Middle-mouse: Centre on Atom Keyboard +/- changes contour level Ctrl Left-mouse drag is how you "Move the Pointer" in Coot. Note that left-mouse does atom picking and rotating view, so try not to click over an atom when trying to rotate the view when in atom selection mode. If you get stuck in "translate" mode, simply press and release the Ctrl key to return to "rotate" mode. To change the map to which the scrollwheel is attached, use HID->Scrollwhell->Attach Scrollwheel to which map? To Use the "Rotation/Translation" column of buttons, simply click on the button and drag (with the button still "down"). Use the function "(quanta-buttons)" (or "quanta_buttons()") to make the mouse functions more like other molecular graphics programs to which you may be more accustomed. GtkDialog rotamer_selection_dialog destroy on_rotamer_selection_dialog_destroy Fri, 05 Nov 2004 14:10:12 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox16 False 0 GtkHBox Dialog:action_area dialog-action_area16 10 True 5 0 False True GTK_PACK_END GtkHBox hbox50 False 0 0 True True GtkButton rotamer_selection_ok_button True True True True clicked on_rotamer_selection_ok_button_clicked Thu, 03 Jul 2003 12:46:04 GMT Accept GTK_RELIEF_NORMAL 0 True True GtkButton rotamer_selection_cancel_button True True clicked on_rotamer_selection_cancel_button_clicked Thu, 03 Jul 2003 12:46:08 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkVBox vbox158 False 0 0 True True GtkScrolledWindow scrolledwindow6 245 170 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport3 GTK_SHADOW_IN GtkVBox rotamer_selection_button_vbox 2 False 0 Placeholder Placeholder Placeholder GtkFrame new_alt_conf_occ_frame 6 New Alt Conf Occupancy 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHScale new_alt_conf_occ_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkDialog unsaved_changes_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox17 False 0 GtkHBox Dialog:action_area dialog-action_area17 10 True 5 0 False True GTK_PACK_END GtkHBox hbox51 False 0 0 True True GtkButton unsaved_changes_continue_button True True True True clicked on_unsaved_changes_continue_button_clicked Fri, 18 Jul 2003 07:48:37 GMT Continue Exit GTK_RELIEF_NORMAL 2 True True GtkButton unsaved_changes_cancel_button True True clicked on_unsaved_changes_cancel_button_clicked Fri, 18 Jul 2003 07:40:03 GMT Cancel GTK_RELIEF_NORMAL 2 True True GtkFrame frame54 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox66 False 0 GtkLabel label98 The following molecule(s) have unsaved changes: GTK_JUSTIFY_CENTER False 0.5 0.5 6 6 0 False False GtkVBox unsaved_changes_molecule_vbox 6 False 0 0 True True Placeholder Placeholder Placeholder GtkLabel label99 Do you wish to Continue to Exit? GTK_JUSTIFY_CENTER False 0.5 0.5 6 6 0 False False GtkDialog baton_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox18 False 0 GtkHBox Dialog:action_area dialog-action_area18 10 True 5 0 False True GTK_PACK_END GtkButton baton_dialog_ok_button Exits Baton Mode True clicked on_baton_dialog_ok_button_clicked Tue, 22 Jul 2003 18:00:25 GMT Dismiss GTK_RELIEF_NORMAL 0 True True GtkVBox vbox69 6 155 False 0 0 True True GtkFrame frame55 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox70 2 False 0 GtkLabel label101 Baton Position GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkFrame frame57 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox72 False 0 GtkButton baton_accept_button 4 Accept this baton tip position, place atom and try new one... True clicked on_baton_accept_button_clicked Tue, 22 Jul 2003 17:59:57 GMT Accept GTK_RELIEF_NORMAL 0 False False GtkButton baton_try_again_button 4 Try Another Autoplacement Baton Position. Cycles back to beginning True clicked on_baton_try_again_button_clicked Tue, 22 Jul 2003 18:00:02 GMT Try Another GTK_RELIEF_NORMAL 0 False False GtkButton baton_undo_button 4 True clicked on_baton_undo_button_clicked Fri, 19 Sep 2003 01:37:41 GMT Undo GTK_RELIEF_NORMAL 0 False False GtkFrame frame56 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox71 False 0 GtkLabel label102 Baton Length GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkFrame frame58 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox73 False 0 GtkButton baton_lengthen_button 4 True clicked on_baton_lengthen_button_clicked Tue, 22 Jul 2003 18:32:33 GMT Lengthen GTK_RELIEF_NORMAL 0 False False GtkButton baton_shorten_button 5 True clicked on_baton_shorten_button_clicked Tue, 22 Jul 2003 18:00:11 GMT Shorten GTK_RELIEF_NORMAL 0 False False GtkDialog read_pdb_recentre_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox20 False 0 GtkHBox Dialog:action_area dialog-action_area20 10 True 5 0 False True GTK_PACK_END GtkButton read_pdb_recentre_dialog_ok_button True clicked on_read_pdb_recentre_dialog_ok_button_clicked Mon, 18 Aug 2003 21:38:45 GMT OK GTK_RELIEF_NORMAL 0 True True GtkVBox vbox75 False 0 0 True True GtkLabel label103 Recentre on read new PDB? GTK_JUSTIFY_CENTER False 0.5 0.5 10 0 5 False False GtkFrame frame60 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox76 False 0 GtkRadioButton read_pdb_recentre_yes_radiobutton True toggled on_read_pdb_recentre_yes_radiobutton_toggled Mon, 18 Aug 2003 21:32:18 GMT Yes False True recentre 0 False False GtkRadioButton read_pdb_recentre_no_radiobutton True toggled on_read_pdb_recentre_no_radiobutton_toggled Mon, 18 Aug 2003 21:32:23 GMT No False True recentre 0 False False GtkDialog pointer_atom_type_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox21 False 0 GtkHBox Dialog:action_area dialog-action_area21 10 True 5 0 False True GTK_PACK_END GtkHBox hbox52 False 0 0 True True GtkButton pointer_atom_type_ok_button True clicked on_pointer_atom_type_ok_button_clicked Wed, 27 Aug 2003 12:29:50 GMT OK GTK_RELIEF_NORMAL 2 True True GtkButton pointer_atom_type_cancel_button True clicked on_pointer_atom_type_cancel_button_clicked Wed, 27 Aug 2003 10:48:56 GMT Cancel GTK_RELIEF_NORMAL 2 True True GtkVBox vbox77 False 0 0 True True GtkLabel label104 Pointer Atom Type: GTK_JUSTIFY_CENTER False 0.5 0.5 0 10 0 False False GtkFrame frame61 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox78 False 0 GtkRadioButton pointer_atom_type_radiobutton_water True Water True True pointer_atom 0 False False GtkRadioButton pointer_atom_type_radiobutton_ca True Ca (calcium) False True pointer_atom 0 False False GtkRadioButton pointer_atom_type_radiobutton_mg True Mg False True pointer_atom 0 False False GtkRadioButton pointer_atom_type_radiobutton_na True Na False True pointer_atom 0 False False GtkRadioButton pointer_atom_type_radiobutton_cl True Cl False True pointer_atom 0 False False GtkRadioButton pointer_atom_type_radiobutton_br True Br False True pointer_atom 0 False False GtkRadioButton pointer_atom_type_radiobutton_so4 True SO4 False True pointer_atom 0 False False GtkRadioButton pointer_atom_type_radiobutton_po4 True PO4 False True pointer_atom 0 False False GtkFrame frame81 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox70 False 0 GtkButton pointer_atom_type_other_button 2 True clicked on_pointer_atom_type_other_button_clicked Wed, 25 Feb 2004 18:51:53 GMT Other... GTK_RELIEF_NORMAL 0 False False GtkEntry pointer_atom_type_other_entry 32 False True True True 0 0 False True GtkFrame frame80 6 Pointer Atom Added to Molecule: 0 GTK_SHADOW_ETCHED_IN 0 True True GtkOptionMenu pointer_atom_molecule_optionmenu True 0 GtkDialog run_refmac_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox22 False 0 GtkHBox Dialog:action_area dialog-action_area22 10 True 5 0 False True GTK_PACK_END GtkHBox hbox56 False 0 0 True True GtkButton run_refmac_run_button Please be patient (sit back and wait...) True clicked on_run_refmac_run_button_clicked Fri, 05 Sep 2003 15:33:10 GMT Run Refmac GTK_RELIEF_NORMAL 0 True False GtkButton run_refmac_cancel_button True clicked on_run_refmac_cancel_button_clicked Fri, 05 Sep 2003 15:33:05 GMT Cancel GTK_RELIEF_NORMAL 0 True False GtkVBox vbox81 False 0 0 True True GtkLabel label109 Choose Coordinates Molecule on which to run refmac: GTK_JUSTIFY_CENTER False 0.5 0.5 6 8 0 False False GtkFrame frame64 2 0 GTK_SHADOW_ETCHED_IN 0 True True GtkOptionMenu run_refmac_coords_optionmenu True 0 GtkHSeparator hseparator4 0 True True GtkLabel label110 Choose Map Molecule that has mtz column labels for refmac: GTK_JUSTIFY_CENTER False 0.5 0.5 6 0 0 False False GtkFrame frame65 2 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox69 False 0 GtkOptionMenu run_refmac_map_optionmenu True 0 0 False False GtkLabel label130 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkButton run_refmac_help_button True clicked on_run_refmac_help_button_clicked Wed, 11 Feb 2004 09:37:11 GMT Help GTK_RELIEF_NORMAL 2 False False GtkFrame frame68 2 0 GTK_SHADOW_ETCHED_IN 0 True True GtkCheckButton run_refmac_diff_map_checkbutton 3 True toggled on_run_refmac_diff_map_checkbutton_toggled Mon, 15 Sep 2003 19:48:55 GMT Display the resulting difference map also False True GtkFrame frame69 2 0 GTK_SHADOW_ETCHED_IN 0 False False GtkCheckButton run_refmac_phase_combine_checkbutton 3 When using MAD/MIR etc phasing, you can combine the experimental phases (i.e. the "Phases used for Map") and the phases derived from the model, thereby (hopefully) improving the map... True toggled on_run_refmac_phase_combine_checkbutton_toggled Mon, 15 Sep 2003 19:48:59 GMT Refmac Phase Combine with Phases used for Map False True GtkFrame frame87 4 CCP4i Project 0 GTK_SHADOW_ETCHED_IN 0 True True GtkOptionMenu run_refmac_ccp4i_optionmenu True 0 GtkDialog single_map_properties_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox23 False 0 GtkHBox Dialog:action_area dialog-action_area23 10 True 5 0 False True GTK_PACK_END GtkHBox hbox58 False 0 0 True True GtkButton single_map_properties_ok_button 6 True True True True clicked on_single_map_properties_ok_button_clicked Thu, 11 Sep 2003 17:24:22 GMT OK GTK_RELIEF_NORMAL 0 True True GtkVBox vbox82 2 False 0 0 True True GtkLabel label115 Map Settings GTK_JUSTIFY_CENTER False 0.5 0.5 2 6 0 False False GtkFrame frame102 6 Cell and Symmetry: 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox110 False 0 GtkLabel label163 Cell: GTK_JUSTIFY_CENTER False 0 0.5 0 2 0 False False GtkLabel single_map_properties_cell_text [map] GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkLabel label165 Spacegroup: GTK_JUSTIFY_CENTER False 7.45058e-09 0.5 0 2 0 False False GtkLabel single_map_properties_sg_text [spacegroup] GTK_JUSTIFY_CENTER False 7.45058e-09 0.5 0 0 0 False False GtkFrame frame103 6 Contouring: 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox194 False 0 GtkFrame frame176 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox153 False 0 GtkLabel label301 Set Level: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry single_map_properties_contour_level_entry True True True 0 0 True True GtkVBox vbox195 False 0 0 True True GtkRadioButton single_map_properties_absolute_radiobutton True absolute False True level_type_gr 0 False False GtkRadioButton single_map_properties_sigma_radiobutton True sigma False True level_type_gr 0 False False GtkVBox vbox196 False 0 0 False False Placeholder GtkButton single_map_properties_contour_level_apply_button True clicked on_single_map_properties_contour_level_apply_button_clicked Thu, 22 Nov 2007 16:33:01 GMT Apply GTK_RELIEF_NORMAL 0 False False Placeholder GtkFrame frame175 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkTable table1 4 2 2 False 0 0 GtkLabel label167 GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 1 0 1 0 0 False False False False True False GtkLabel label168 Sigma Step GTK_JUSTIFY_CENTER False 0 0.5 0 0 1 2 0 1 0 0 False False False False True False GtkCheckButton single_map_sigma_checkbutton By default, maps are contoured by fixed e/A3 units. Setting this allows you to contour using sigma step instead. This is useful for unusual maps - such as E-maps and maps synthesised from structure factors far off the absolute scale. True toggled on_single_map_sigma_checkbutton_toggled Sun, 02 May 2004 17:15:39 GMT Change by sigma? False True 0 1 1 2 0 0 False False False False True False GtkEntry single_map_sigma_step_entry 99 True True True 0 1 2 1 2 0 0 False False False False False False GtkFrame frame104 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox84 6 False 0 GtkLabel label169 Map Colour GTK_JUSTIFY_CENTER False 0.5 0.5 7 0 0 False False GtkButton single_map_properties_colour_button See Section 6.5 of the User Manual for default Difference Map colouring. True clicked on_single_map_properties_colour_button_clicked Thu, 11 Sep 2003 18:05:58 GMT GTK_RELIEF_NORMAL 0 False False GtkFrame single_map_colour_button_frame 0 GTK_SHADOW_ETCHED_IN GtkLabel label114 Colour GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 GtkFrame single_map_skeleton_frame 6 Skeleton: 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox86 False 0 GtkRadioButton single_map_skeleton_on_radiobutton 4 True On False True single_map_skeleton 0 False False GtkRadioButton single_map_skeleton_off_radiobutton 4 True Off False True single_map_skeleton 0 False False GtkDialog undo_molecule_chooser_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox24 False 0 GtkHBox Dialog:action_area dialog-action_area24 10 True 5 0 False True GTK_PACK_END GtkButton undo_molecule_chooser_ok_button True True True clicked on_undo_molecule_chooser_ok_button_clicked Mon, 22 Sep 2003 06:27:40 GMT OK GTK_RELIEF_NORMAL 0 True True GtkVBox vbox83 False 0 0 True True GtkLabel label116 Choose Molecule to Undo: GTK_JUSTIFY_CENTER False 0.5 0.5 3 4 0 False False GtkFrame frame70 2 0 GTK_SHADOW_ETCHED_IN 0 True True GtkOptionMenu undo_molecule_chooser_option_menu You want to undo a modification. There are 2 or more molecules that have been modified. To which molecule should the undo apply? True 0 GtkDialog skeleton_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox25 False 0 GtkHBox Dialog:action_area dialog-action_area25 10 True 5 0 False True GTK_PACK_END GtkHBox hbox59 False 0 0 True True GtkButton skeleton_ok_button True clicked on_skeleton_ok_button_clicked Tue, 30 Sep 2003 12:09:16 GMT OK GTK_RELIEF_NORMAL 3 True True GtkButton skeleton_cancel_button True clicked on_skeleton_cancel_button_clicked Tue, 30 Sep 2003 12:09:20 GMT Cancel GTK_RELIEF_NORMAL 3 True True GtkVBox vbox84 False 0 0 True True GtkLabel label117 Skeletonize Map: GTK_JUSTIFY_CENTER False 0.5 0.5 0 5 0 False False GtkFrame frame71 2 0 GTK_SHADOW_ETCHED_IN 0 True True GtkOptionMenu skeleton_map_optionmenu True 0 GtkFrame skeleton_dialog_on_off_frame 2 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox85 False 0 GtkRadioButton skeleton_on_radiobutton 4 True On False True skeleton 0 False False GtkRadioButton skeleton_off_radiobutton 4 True Off True True skeleton 0 False False GtkCheckButton skeleton_prune_and_colour_checkbutton 4 False Remove sidechains from the skeleton and colour by domain True Prune & Colour False True 0 False False GtkWindow splash_screen_window GTK_WINDOW_POPUP GTK_WIN_POS_CENTER False False True False GtkPixmap pixmap3 coot-0.6.1.xpm 0.5 0.5 0 0 True GtkDialog crosshairs_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox26 False 0 GtkHBox Dialog:action_area dialog-action_area26 10 True 5 0 False True GTK_PACK_END GtkButton display_crosshairs_ok_button True clicked on_display_crosshairs_ok_button_clicked Sat, 25 Oct 2003 00:53:49 GMT OK GTK_RELIEF_NORMAL 0 True True GtkVBox vbox87 False 0 0 True True GtkLabel label119 Display Crosshairs GTK_JUSTIFY_CENTER False 0.5 0.5 3 7 0 False False GtkFrame frame72 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox88 False 0 GtkRadioButton crosshairs_on_radiobutton 6 True toggled on_crosshairs_on_radiobutton_toggled Sat, 25 Oct 2003 00:53:11 GMT On False True crosshairs 0 False False GtkRadioButton crosshairs_off_radiobutton 6 True toggled on_crosshairs_off_radiobutton_toggled Sat, 25 Oct 2003 00:53:06 GMT Off True True crosshairs 0 False False GtkDialog add_alt_conf_dialog destroy on_add_alt_conf_dialog_destroy Sun, 08 Feb 2004 01:56:45 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox27 False 0 GtkHBox Dialog:action_area dialog-action_area27 10 True 5 0 False True GTK_PACK_END GtkHBox hbox60 False 0 0 True True Placeholder GtkButton add_alt_conf_cancel_button True clicked on_add_alt_conf_cancel_button_clicked Sat, 01 Nov 2003 15:44:05 GMT Cancel GTK_RELIEF_NORMAL 2 True True GtkVBox vbox89 False 0 0 True True GtkLabel label120 Add Alternate Conformation GTK_JUSTIFY_CENTER False 0.5 0.5 3 6 0 False False GtkFrame frame73 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox90 False 0 GtkRadioButton add_alt_conf_ca_radiobutton 4 True toggled on_add_alt_conf_ca_radiobutton_toggled Fri, 06 Feb 2004 02:14:40 GMT Split Single Residue at C-alpha True True add_alt_conf 0 False False GtkRadioButton add_alt_conf_whole_single_residue_radiobutton 4 True toggled on_add_alt_conf_whole_single_residue_radiobutton_toggled Fri, 06 Feb 2004 02:22:44 GMT Split All of a Single Residue False True add_alt_conf 0 False False GtkRadioButton add_alt_conf_residue_range_radiobutton 4 False True toggled on_add_alt_conf_residue_range_radiobutton_toggled Sat, 01 Nov 2003 15:44:11 GMT Split a Residue Range False True add_alt_conf 0 False False GtkDialog validation_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox28 False 0 GtkHBox Dialog:action_area dialog-action_area28 10 True 5 0 False True GTK_PACK_END GtkHBox hbox61 False 0 0 True True GtkButton validation_dialog_next_button 2 True clicked on_validation_dialog_next_button_clicked Wed, 05 Nov 2003 09:26:06 GMT Next GTK_RELIEF_NORMAL 2 True True GtkButton validation_dialog_prev_button 2 True clicked on_validation_dialog_prev_button_clicked Wed, 05 Nov 2003 09:26:11 GMT Previous GTK_RELIEF_NORMAL 2 True True GtkButton validation_dialog_cancel_button 2 True clicked on_validation_dialog_cancel_button_clicked Wed, 05 Nov 2003 09:26:14 GMT Cancel GTK_RELIEF_NORMAL 2 True True GtkFrame frame74 4 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox91 False 0 GtkLabel label121 Description GTK_JUSTIFY_CENTER False 0.5 0.5 0 3 0 False False GtkScrolledWindow scrolledwindow7 GTK_POLICY_NEVER GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkText validation_dialog_text 230 True False GtkHBox hbox63 4 False 0 0 False True GtkLabel validation_dialog_residue_or_atom_label Residue: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry validation_dialog_residue_entry 99 True False True 0 0 False True GtkLabel label123 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkHBox hbox64 4 False 0 0 False True GtkLabel label124 Number GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry validation_dialog_baddie_number_entry 35 True False True 0 0 False True GtkLabel label125 of 104 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkDialog run_state_file_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox29 False 0 GtkHBox Dialog:action_area dialog-action_area29 10 True 5 0 False True GTK_PACK_END GtkHBox hbox66 False 0 0 True True GtkButton run_state_file_ok_button True True True True clicked on_run_state_file_ok_button_clicked Mon, 01 Dec 2003 14:27:12 GMT Yes GTK_RELIEF_NORMAL 2 True True GtkButton run_state_file_cancel_button True True clicked on_run_state_file_cancel_button_clicked Mon, 01 Dec 2003 14:27:32 GMT No GTK_RELIEF_NORMAL 2 True True GtkVBox vbox191 False 0 0 False False GtkLabel label127 There is a coot auto-save state file here. GTK_JUSTIFY_CENTER False 0.5 0.5 30 15 0 False False Placeholder GtkVBox mols_vbox False 0 0 True True Placeholder Placeholder Placeholder GtkLabel label300 Do you want to run it? GTK_JUSTIFY_CENTER False 0.5 0.5 30 15 0 False False GtkDialog edit_backbone_torsions_dialog destroy on_edit_backbone_torsions_dialog_destroy Tue, 02 Dec 2003 03:24:32 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox30 False 0 GtkHBox Dialog:action_area dialog-action_area30 10 True 5 0 False True GTK_PACK_END GtkHBox hbox67 False 0 0 True True GtkButton edit_backbone_torsion_ok_button True True True True clicked on_edit_backbone_torsion_ok_button_clicked Tue, 02 Dec 2003 15:45:54 GMT OK GTK_RELIEF_NORMAL 0 True True GtkButton edit_backbone_torsion_cancel_button True True clicked on_edit_backbone_torsion_cancel_button_clicked Tue, 02 Dec 2003 15:45:46 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkFrame frame75 2 200 0 GTK_SHADOW_ETCHED_IN 7 True True GtkVBox vbox93 160 False 3 GtkFrame frame82 6 Rotate Peptide 0 GTK_SHADOW_ETCHED_IN 0 False False GtkHScale edit_backbone_torsions_rotate_peptide_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkFrame frame83 6 Rotate Carbonyl 0 GTK_SHADOW_ETCHED_IN 0 False False GtkHScale edit_backbone_torsions_rotate_carbonyl_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkDialog start_workflow_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox31 False 0 GtkHBox Dialog:action_area dialog-action_area31 10 True 5 0 False True GTK_PACK_END GtkHBox hbox68 False 0 0 True True GtkButton workflow_ok_button True True True True clicked on_workflow_ok_button_clicked Fri, 19 Dec 2003 15:19:16 GMT OK GTK_RELIEF_NORMAL 4 True True GtkButton workflow_cancel_button True True clicked on_workflow_cancel_button_clicked Fri, 19 Dec 2003 15:19:10 GMT Cancel GTK_RELIEF_NORMAL 4 True True GtkFrame frame76 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox94 False 0 GtkRadioButton workflow_radiobutton_coords_only Only Coordinates - no map True toggled on_workflow_radiobutton_coords_only_toggled Fri, 19 Dec 2003 15:21:15 GMT Display just Coordinates False True workflow_start 0 False False GtkRadioButton workflow_radiobutton_coords_and_dataset Here, "Dataset" means an mtz, phs or mmcif file True toggled on_workflow_radiobutton_coords_and_dataset_toggled Fri, 19 Dec 2003 15:21:20 GMT Display Coordinates and calculate a Map from a Dataset False True workflow_start 0 False False GtkRadioButton workflow_radiobutton_coords_and_map Coordinates and a CCP4 Map True toggled on_workflow_radiobutton_coords_and_map_toggled Fri, 19 Dec 2003 15:21:26 GMT Display Coordinates and a pre-calculated CCP4 Map False True workflow_start 0 False False GtkRadioButton workflow_radiobutton_map_from_dataset Here, "Dataset" means an mtz, phs or mmcif file True toggled on_workflow_radiobutton_map_from_dataset_toggled Fri, 19 Dec 2003 15:21:31 GMT Calculate a Map from a Dataset False True workflow_start 0 False False GtkRadioButton workstate_radiobutton_clean_slate Nothing special True toggled on_workstate_radiobutton_clean_slate_toggled Fri, 19 Dec 2003 15:21:37 GMT Start from a "Clean Slate" False True workflow_start 0 False False GtkDialog select_fitting_map_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox32 False 0 GtkHBox Dialog:action_area dialog-action_area32 10 True 5 0 False True GTK_PACK_END GtkButton select_map_for_fitting_button True True True True clicked on_select_map_for_fitting_button_clicked Wed, 24 Dec 2003 14:53:07 GMT OK GTK_RELIEF_NORMAL 0 True True GtkFrame frame77 4 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox95 False 0 GtkLabel label128 Choose a Map: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu select_map_for_fitting_optionmenu True 0 0 False False GtkDialog run_refmac_help_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox33 False 0 GtkHBox Dialog:action_area dialog-action_area33 10 True 5 0 False True GTK_PACK_END GtkButton run_refmac_help_dialog_ok_button True clicked on_run_refmac_help_dialog_ok_button_clicked Wed, 11 Feb 2004 09:37:05 GMT OK GTK_RELIEF_NORMAL 0 False False GtkLabel label129 When you read in an MTZ file, you can assign the column labels needed to run Refmac. If this option menu is empty it means that you have not assigned Refmac labels from any MTZ file. To fix, Cancel the "Run Refmac" dialog, Use File -> Open MTZ and assign Refmac column labels. Then use "Run Refmac..." from the "Model/Fit/Refine" dialog. GTK_JUSTIFY_CENTER False 0 0 6 5 0 False False GtkDialog no_restraints_info_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox34 False 0 GtkHBox Dialog:action_area dialog-action_area34 10 True 5 0 False True GTK_PACK_END GtkButton no_restraints_info_dialog_button True clicked on_no_restraints_info_dialog_button_clicked Sun, 22 Feb 2004 11:52:52 GMT OK GTK_RELIEF_NORMAL 0 True True GtkFrame frame78 6 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox vbox205 False 0 GtkLabel label131 No Restraints Found! Non-existent or minimal description of restrained residues. Are you sure that you read a non-minimal mmCIF dictionary for this monomer? Are you sure the PDB residue name matches the dictionary residue name? If not, try File -> Import CIF Dictionary Alternatively, did you check that the atom names of the PDB file match those of the restraints? GTK_JUSTIFY_CENTER False 0 0 8 0 0 False False GtkLabel no_restraints_extra_label ----------------- The residues in the chain are out of order. This can cause problems with residues selection. Suggest you re-order residues in increasing order. GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkDialog no_cif_dictionary_bonds_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox35 False 0 GtkHBox Dialog:action_area dialog-action_area35 10 True 5 0 False True GTK_PACK_END GtkButton no_cif_dictionary_bonds_ok_button True clicked on_no_cif_dictionary_bonds_ok_button_clicked Sun, 22 Feb 2004 23:04:04 GMT OK GTK_RELIEF_NORMAL 0 True True GtkFrame frame79 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label132 Ooops! CIF Dictionary contains no restraints! GTK_JUSTIFY_CENTER False 0.5 0.5 8 16 GtkDialog ligand_big_blob_dialog destroy on_ligand_big_blob_dialog_destroy Tue, 02 Aug 2005 23:52:53 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox36 False 0 GtkHBox Dialog:action_area dialog-action_area36 10 True 5 0 False True GTK_PACK_END GtkButton ligand_big_blob_dismiss_button True clicked on_ligand_big_blob_dismiss_button_clicked Sat, 28 Feb 2004 23:34:18 GMT Dismiss GTK_RELIEF_NORMAL 0 True True GtkVBox vbox97 False 0 0 True True GtkLabel label133 There are unexplained blobs of density (too big to be waters): GTK_JUSTIFY_CENTER False 0.5 0.5 10 0 0 False False GtkScrolledWindow scrolledwindow8 106 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport4 GTK_SHADOW_IN GtkVBox ligand_big_blob_vbox False 0 Placeholder GtkDialog edit_chi_angles_dialog destroy on_edit_chi_angles_dialog_destroy Sat, 13 Mar 2004 21:55:45 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox37 False 0 GtkHBox Dialog:action_area dialog-action_area37 10 True 5 0 False True GTK_PACK_END GtkHBox hbox71 False 0 0 True True GtkButton edit_chi_angles_dialog_ok_button True True True True clicked on_edit_chi_angles_dialog_ok_button_clicked Mon, 01 Mar 2004 19:11:24 GMT Accept GTK_RELIEF_NORMAL 0 True True GtkButton edit_chi_angles_cancel_button True True clicked on_edit_chi_angles_cancel_button_clicked Mon, 01 Mar 2004 19:11:40 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkVBox vbox98 False 0 0 True True GtkLabel label134 Chi Angles Rotation Mode: GTK_JUSTIFY_CENTER False 0.5 0.5 2 7 0 False False GtkScrolledWindow scrolledwindow9 125 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport5 GTK_SHADOW_IN GtkVBox edit_chi_angles_vbox False 0 Placeholder GtkCheckButton edit_chi_angles_add_hydrogen_torsions_checkbutton 1 In the above list, include rotatable bonds that rotate (only) the hydrogens, e.g. CB-CG2 for a VAL (i.e. not particularly useful most of the time) True toggled on_edit_chi_angles_add_hydrogen_torsions_checkbutton_toggled Sun, 07 Sep 2008 03:49:06 GMT Add Chi Angles for Hydrogens False True 0 False False GtkButton edit_chi_angles_normal_rotation_button 6 True clicked on_edit_chi_angles_normal_rotation_button_clicked Mon, 08 Mar 2004 11:48:29 GMT View Rotation Mode GTK_RELIEF_NORMAL 0 False False GtkButton edit_chi_angles_help_button 6 True clicked on_edit_chi_angles_help_button_clicked Wed, 24 Mar 2004 01:46:06 GMT Help me out here... GTK_RELIEF_NORMAL 0 False False GtkDialog check_waters_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox38 False 0 GtkHBox Dialog:action_area dialog-action_area38 10 True 5 0 False True GTK_PACK_END GtkHBox hbox78 False 0 0 True True GtkButton check_waters_ok_button True clicked on_check_waters_ok_button_clicked Mon, 01 Mar 2004 19:47:54 GMT OK GTK_RELIEF_NORMAL 2 True True GtkButton check_waters_cancel_button True clicked on_check_waters_cancel_button_clicked Mon, 01 Mar 2004 19:47:48 GMT Cancel GTK_RELIEF_NORMAL 2 True True GtkVBox vbox100 False 0 0 True True GtkHBox hbox73 6 False 0 5 True True GtkLabel label136 Molecule Number: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu check_waters_molecule_optionmenu True 0 0 False False GtkHBox hbox72 6 False 0 0 True True GtkLabel label135 Action: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu check_waters_action_optionmenu True Generate a List Delete Waters 0 0 False False GtkFrame frame84 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox101 False 0 GtkHBox hbox74 2 False 0 0 True True Placeholder Placeholder Placeholder GtkHBox check_waters_b_factor_hbox False 0 0 True True GtkLabel label259 with B factor greater than: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry check_waters_b_factor_entry 70 True True True 0 0 True True GtkLabel label141 A^2 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton check_waters_b_factor_entry_active_checkbutton True toggled on_check_waters_b_factor_entry_active_checkbutton_toggled Mon, 30 May 2005 02:01:49 GMT Active True True 0 False False GtkHBox hbox75 2 False 0 0 True True Placeholder Placeholder Placeholder GtkHBox check_waters_sigma_level_hbox False 0 0 True True GtkLabel label138 with map sigma level less than: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry check_waters_map_sigma_entry 72 True True True 0 0 True True GtkLabel label142 electrons/A3 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton check_waters_map_sigma_entry_active_checkbutton True toggled on_check_waters_map_sigma_entry_active_checkbutton_toggled Thu, 02 Jun 2005 21:20:47 GMT Active True True 0 False False GtkHBox hbox76 2 False 0 0 True True Placeholder Placeholder Placeholder GtkHBox check_waters_min_dist_hbox False 0 0 True True GtkLabel label139 with closest contact less than: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry check_waters_min_dist_entry 78 True True True 0 0 True True GtkLabel label143 A GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton check_waters_min_dist_entry_active_checkbutton True toggled on_check_waters_min_dist_entry_active_checkbutton_toggled Mon, 30 May 2005 02:04:19 GMT Active True True 0 False False GtkHBox hbox77 2 False 0 0 True True Placeholder Placeholder Placeholder GtkHBox check_waters_max_dist_hbox False 0 0 True True GtkLabel label140 with closest contact more than: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry check_waters_max_dist_entry 74 True True True 0 0 True True GtkLabel label144 A GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton check_waters_max_dist_entry_active_checkbutton True toggled on_check_waters_max_dist_entry_active_checkbutton_toggled Mon, 30 May 2005 02:04:33 GMT Active True True 0 False False GtkCheckButton check_waters_low_occ_dist_checkbutton True toggled on_check_waters_low_occ_dist_checkbutton_toggled Tue, 16 Mar 2004 23:38:23 GMT Ignore Partial Occupancy close contacts False True 0 False False GtkCheckButton check_waters_zero_occ_checkbutton True toggled on_check_waters_zero_occ_checkbutton_toggled Tue, 16 Mar 2004 23:38:19 GMT Ignore Waters with Zero Occupancy False True 0 False False GtkFrame frame154 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox157 False 0 GtkLabel label244 For Waters that match: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkRadioButton check_waters_OR_radiobutton 3 True Any Criterion True True check_waters_logic_gr 0 False False GtkRadioButton check_waters_AND_radiobutton 3 All criteria except the distance criteria (can be either) True All Criteria False True check_waters_logic_gr 0 False False GtkDialog geometry_dialog 6 destroy on_geometry_dialog_destroy Wed, 10 Mar 2004 14:25:11 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox39 False 0 GtkHBox Dialog:action_area dialog-action_area39 10 True 5 0 False True GTK_PACK_END GtkButton geometry_dialog_close_button True clicked on_geometry_dialog_close_button_clicked Mon, 08 Mar 2004 19:24:34 GMT Close GTK_RELIEF_NORMAL 0 True True GtkVBox vbox102 False 0 0 True True GtkToggleButton geometry_distance_togglebutton 2 True toggled on_geometry_distance_togglebutton_toggled Mon, 08 Mar 2004 19:26:53 GMT Distance GTK_RELIEF_NORMAL False 0 False False GtkToggleButton geometry_angle_togglebutton 2 True toggled on_geometry_angle_togglebutton_toggled Wed, 10 Mar 2004 12:51:18 GMT Angle GTK_RELIEF_NORMAL False 0 False False GtkToggleButton geometry_torsion_togglebutton 2 True toggled on_geometry_torsion_togglebutton_toggled Sat, 19 Feb 2005 10:16:57 GMT Torsion GTK_RELIEF_NORMAL False 0 False False GtkToggleButton geometry_dynamic_distance_togglebutton 2 True toggled on_geometry_dynamic_distance_togglebutton_toggled Sat, 29 Dec 2007 15:46:30 GMT Dynamic Distance GTK_RELIEF_NORMAL False 0 False False GtkHSeparator hseparator10 10 0 True True GtkButton geometry_clear_last_distance_button 2 True clicked on_geometry_clear_last_distance_button_clicked Mon, 08 Mar 2004 19:30:07 GMT Clear Last Distance GTK_RELIEF_NORMAL 0 False False GtkButton geometry_clear_all_distances_button 2 True clicked on_geometry_clear_all_distances_button_clicked Mon, 08 Mar 2004 19:30:11 GMT Clear All Distances GTK_RELIEF_NORMAL 0 False False GtkButton geometry_clear_atom_labels_button 2 True clicked on_geometry_clear_atom_labels_button_clicked Mon, 08 Mar 2004 19:30:58 GMT Clear All Atom Labels GTK_RELIEF_NORMAL 0 False False GtkDialog new_ligands_info_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox40 False 0 GtkHBox Dialog:action_area dialog-action_area40 10 True 5 0 False True GTK_PACK_END GtkButton new_ligands_info_dialog_ok_button True True True clicked on_new_ligands_info_dialog_ok_button_clicked Fri, 12 Mar 2004 00:08:22 GMT OK GTK_RELIEF_NORMAL 0 True True GtkVBox vbox103 False 0 0 False False GtkLabel new_ligands_info_dialog_label Found 4 acceptable ligands GTK_JUSTIFY_CENTER False 0.5 0.5 3 15 4 False False GtkLabel label148 False Use Display Manager and Goto Atom Molecule optionmenu to navigate these new molecules GTK_JUSTIFY_CENTER False 0.5 0.5 7 0 7 False False GtkDialog no_new_ligands_info_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox41 False 0 GtkHBox Dialog:action_area dialog-action_area41 10 True 5 0 False True GTK_PACK_END GtkButton no_new_ligands_info_dialog_ok_button True True True clicked on_no_new_ligands_info_dialog_ok_button_clicked Fri, 12 Mar 2004 00:16:51 GMT OK GTK_RELIEF_NORMAL 0 True True GtkLabel label149 Sadly no ligands were found. Perhaps there were no ligands to be found? Alternatively you could try to reduce the search sigma level or the acceptable fit fraction. GTK_JUSTIFY_CENTER False 0.5 0.5 1 6 10 False False GtkDialog zoom_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox42 False 0 GtkHBox Dialog:action_area dialog-action_area42 10 True 5 0 False True GTK_PACK_END GtkButton zoom_dialog_ok_button True clicked on_zoom_dialog_ok_button_clicked Fri, 12 Mar 2004 10:27:56 GMT OK GTK_RELIEF_NORMAL 0 True True GtkVBox vbox104 False 0 0 True True GtkLabel label150 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 5 False False GtkFrame frame86 7 270 Zoom Control 0 GTK_SHADOW_ETCHED_IN 9 False False GtkHScale zoom_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 GtkDialog libcheck_monomer_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox43 False 0 GtkHBox Dialog:action_area dialog-action_area43 10 True 5 0 False True GTK_PACK_END GtkHBox hbox81 False 0 0 True True GtkButton libcheck_monomer_ok_button True True True True clicked on_libcheck_monomer_ok_button_clicked Fri, 19 Mar 2004 15:55:33 GMT OK GTK_RELIEF_NORMAL 4 True True GtkButton libcheck_monomer_cancel_button True True clicked on_libcheck_monomer_cancel_button_clicked Fri, 19 Mar 2004 15:55:29 GMT Cancel GTK_RELIEF_NORMAL 4 True True GtkVBox vbox105 4 False 0 0 True True Placeholder GtkHBox hbox80 17 False 0 0 True True GtkLabel label151 3 Letter Code: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry libcheck_monomer_entry 53 True key_press_event on_libcheck_monomer_entry_key_press_event Fri, 19 Mar 2004 16:02:15 GMT True True 0 0 False True GtkLabel label152 Note: Code is Case Sensitive GTK_JUSTIFY_CENTER False 0.5 0.5 10 2 0 False False GtkDialog recover_coordinates_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox44 False 0 GtkHBox Dialog:action_area dialog-action_area44 10 True 5 0 False True GTK_PACK_END GtkHBox hbox82 False 0 0 True True GtkButton recover_coordinates_ok_button True True True clicked on_recover_coordinates_ok_button_clicked Sun, 21 Mar 2004 22:18:17 GMT Recover GTK_RELIEF_NORMAL 4 True False GtkButton recover_coordinates_cancel_button True True clicked on_recover_coordinates_cancel_button_clicked Sun, 21 Mar 2004 22:18:44 GMT Cancel GTK_RELIEF_NORMAL 4 True False GtkFrame frame88 7 0 GTK_SHADOW_ETCHED_IN 13 True True GtkVBox vbox107 False 0 GtkLabel label153 Read Coordinates: GTK_JUSTIFY_CENTER False 0 0.5 0 6 4 False False GtkLabel recover_coordinates_read_coords_label molecule name GTK_JUSTIFY_CENTER False 7.45058e-09 0.5 0 4 0 False False GtkLabel label154 Backup Coordinates: GTK_JUSTIFY_CENTER False 0 0.5 0 6 4 False False GtkLabel recover_coordinates_backup_coordinates_label filename GTK_JUSTIFY_CENTER False 7.45058e-09 0.5 0 4 2 False False GtkDialog centre_atom_label_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox45 False 0 GtkHBox Dialog:action_area dialog-action_area45 10 True 5 0 False True GTK_PACK_END GtkButton centre_atom_label_ok_button True True True True clicked on_centre_atom_label_ok_button_clicked Tue, 23 Mar 2004 23:01:57 GMT Dismiss GTK_RELIEF_NORMAL 0 True False GtkFrame frame89 6 0 GTK_SHADOW_ETCHED_IN 6 True True GtkVBox vbox108 False 0 GtkLabel label155 Label Centre Atom on Recentre? GTK_JUSTIFY_CENTER False 0.5 0.5 26 18 0 False False GtkRadioButton centre_atom_label_radiobutton_on True On False True centre_atom_label_gr 4 False False GtkRadioButton centre_atom_label_radiobutton_off True Off False True centre_atom_label_gr 4 False False GtkLabel label166 [ Note: this setting is trumped by ] [ Evironment Disance Label Atom? ] GTK_JUSTIFY_CENTER False 0.5 0.5 0 5 0 False False GtkDialog chi_angle_help_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox46 False 0 GtkHBox Dialog:action_area dialog-action_area46 10 True 5 0 False True GTK_PACK_END GtkButton help_chi_angles_dismiss_button True clicked on_help_chi_angles_dismiss_button_clicked Wed, 24 Mar 2004 01:54:20 GMT Dismiss GTK_RELIEF_NORMAL 0 False False GtkFrame frame96 4 0 GTK_SHADOW_ETCHED_IN 2 True True GtkLabel label156 Select the chi angle (rotatable bond) by clicking on the button in the list. In the graphics window, click and drag as you would if you wanted to change the view - this causes the atoms to move. There are keyboard equivalents to the butons, "1" will rotate chi__1, "2" will rotate chi__2 etc... To make the view move (rather than the intermediate atoms), click the "View Rotation Mode" button or use the Ctrl key when moving the mouse. GTK_JUSTIFY_CENTER False 0 0.5 2 8 GtkDialog no_symmetry_warning_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox47 False 0 GtkHBox Dialog:action_area dialog-action_area47 10 True 5 0 False True GTK_PACK_END GtkButton no_symmetry_warning_ok_button True True True True clicked on_no_symmetry_warning_ok_button_clicked Thu, 25 Mar 2004 12:39:33 GMT OK GTK_RELIEF_NORMAL 0 True True GtkLabel label157 WARNING! Symmetry Library not found If you need symmetry, setup ccp4 before starting coot GTK_JUSTIFY_CENTER False 0.5 0.5 15 0 0 False False GtkDialog nothing_to_recover_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox48 False 0 GtkHBox Dialog:action_area dialog-action_area48 10 True 5 0 False True GTK_PACK_END GtkButton nothing_to_recover_ok_button True True True True clicked on_nothing_to_recover_ok_button_clicked Fri, 26 Mar 2004 18:21:55 GMT OK GTK_RELIEF_NORMAL 0 True True GtkFrame frame97 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label158 Nothing to recover GTK_JUSTIFY_CENTER False 0.5 0.5 50 20 GtkDialog superpose_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox49 False 0 GtkHBox Dialog:action_area dialog-action_area49 10 True 5 0 False True GTK_PACK_END GtkHBox hbox83 False 0 0 True True GtkButton superpose_dialog_superpose_button 2 True True True True clicked on_superpose_dialog_superpose_button_clicked Mon, 29 Mar 2004 02:29:23 GMT Superpose GTK_RELIEF_NORMAL 2 True True GtkButton superpose_dialog_cancel_button 2 True True clicked on_superpose_dialog_cancel_button_clicked Mon, 29 Mar 2004 02:29:27 GMT Cancel GTK_RELIEF_NORMAL 2 True True GtkVBox vbox109 False 0 0 True True GtkLabel label159 Superpose Molecules GTK_JUSTIFY_CENTER False 0.5 0.5 0 11 0 False False GtkFrame frame98 4 Reference Structure 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox vbox142 False 0 GtkOptionMenu superpose_dialog_reference_mol_optionmenu True 0 0 False False GtkFrame superpose_reference_structure_frame 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox144 False 0 GtkCheckButton superpose_reference_chain_checkbutton True toggled on_superpose_reference_chain_checkbutton_toggled Wed, 27 Oct 2004 21:57:35 GMT Use Specific Chain False True 0 False False GtkOptionMenu superpose_reference_chain_optionmenu True 0 0 False False GtkLabel label160 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame frame99 4 Moving Structure 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox vbox143 False 0 GtkOptionMenu superpose_dialog_moving_mol_optionmenu True 0 0 False False GtkFrame superpose_moving_structure_frame 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox145 False 0 GtkCheckButton superpose_moving_chain_checkbutton True toggled on_superpose_moving_chain_checkbutton_toggled Wed, 27 Oct 2004 21:57:42 GMT Use Specific Chain False True 0 False False GtkOptionMenu superpose_moving_chain_optionmenu True 0 0 False False GtkCheckButton superpose_dialog_move_copy_checkbutton 4 True Move copy of Moving Structure False True 0 False False GtkDialog superpose_nonsense_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox50 False 0 GtkHBox Dialog:action_area dialog-action_area50 10 True 5 0 False True GTK_PACK_END GtkHBox hbox149 True 0 0 True True GtkButton superpose_nonsense_ok_button True True True True clicked on_superpose_nonsense_ok_button_clicked Mon, 29 Mar 2004 02:31:29 GMT OK GTK_RELIEF_NORMAL 0 True True GtkButton superpose_nonsense_cancel_button True clicked on_superpose_nonsense_cancel_button_clicked Tue, 12 Dec 2006 13:06:30 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkFrame frame100 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label161 Can't superpose a molecule onto itself. Move a copy? GTK_JUSTIFY_LEFT False 0.5 0.5 10 20 GtkDialog add_terminal_residue_finds_none_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox51 False 0 GtkHBox Dialog:action_area dialog-action_area51 10 True 5 0 False True GTK_PACK_END GtkButton add_terminal_residue_finds_none_ok_button True clicked on_add_terminal_residue_finds_none_ok_button_clicked Wed, 31 Mar 2004 23:15:31 GMT OK GTK_RELIEF_NORMAL 0 True True GtkFrame frame101 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label162 Add Terminal Residue failed to find any acceptable configuration here. GTK_JUSTIFY_CENTER False 0.5 0.5 33 42 GtkDialog no_bad_chiral_volumes_dialog 2 GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox52 False 0 GtkHBox Dialog:action_area dialog-action_area52 10 True 5 0 False True GTK_PACK_END GtkButton no_bad_chiral_volumes_dialog_ok_button True clicked on_no_bad_chiral_volumes_dialog_ok_button_clicked Fri, 04 Jun 2004 15:15:09 GMT Good GTK_RELIEF_NORMAL 0 False False GtkFrame frame105 4 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label170 Coot detected no bad chiral volumes in this molecule. GTK_JUSTIFY_CENTER False 0.5 0.5 24 31 GtkDialog check_chiral_volumes_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox53 False 0 GtkHBox Dialog:action_area dialog-action_area53 10 True 5 0 False True GTK_PACK_END GtkHBox hbox85 False 0 0 True True GtkButton check_chiral_volumes_ok_button 4 True True True True clicked on_check_chiral_volumes_ok_button_clicked Fri, 04 Jun 2004 15:22:04 GMT Check Volumes GTK_RELIEF_NORMAL 0 False False GtkButton check_chiral_volumes_cancel_button 4 True True clicked on_check_chiral_volumes_cancel_button_clicked Fri, 04 Jun 2004 15:22:11 GMT Cancel GTK_RELIEF_NORMAL 0 False False GtkFrame frame106 7 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox111 False 0 GtkLabel label171 Check Chiral Volumes on molecule: GTK_JUSTIFY_CENTER False 0.5 0.5 2 9 0 False False GtkOptionMenu check_chiral_volumes_molecule_optionmenu True 0 0 False False GtkDialog bad_chiral_volumes_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox54 False 0 GtkHBox Dialog:action_area dialog-action_area54 10 True 5 0 False True GTK_PACK_END GtkButton chiral_volume_baddies_dialog_cancel_button True True True True clicked on_chiral_volume_baddies_dialog_cancel_button_clicked Fri, 04 Jun 2004 16:13:39 GMT Cancel GTK_RELIEF_NORMAL 0 False False GtkScrolledWindow scrolledwindow10 130 98 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport6 GTK_SHADOW_IN GtkVBox chiral_volume_baddies_vbox False 0 Placeholder Placeholder Placeholder GtkDialog rigid_body_refinement_failed_dialog 4 GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox55 False 0 GtkHBox Dialog:action_area dialog-action_area55 10 True 5 0 False True GTK_PACK_END GtkButton rigid_body_refinement_failed_dialog_ok_button True clicked on_rigid_body_refinement_failed_dialog_ok_button_clicked Wed, 09 Jun 2004 17:15:31 GMT OK GTK_RELIEF_NORMAL 6 False False GtkFrame frame107 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label172 Rigid Body Refinement failed. No sensible place to put the atoms. Sorry. GTK_JUSTIFY_CENTER False 0.5 0.5 13 18 GtkDialog baton_mode_make_skeleton_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox56 False 0 GtkHBox Dialog:action_area dialog-action_area56 10 True 5 0 False True GTK_PACK_END GtkHBox hbox86 False 0 0 True True GtkButton baton_mode_calculate_skeleton_ok_button 2 True True True True clicked on_baton_mode_calculate_skeleton_ok_button_clicked Tue, 15 Jun 2004 14:21:39 GMT Calculate GTK_RELIEF_NORMAL 0 True False GtkButton baton_mode_calculate_skeleton_cancel_button 2 True True clicked on_baton_mode_calculate_skeleton_cancel_button_clicked Tue, 15 Jun 2004 14:21:44 GMT Cancel GTK_RELIEF_NORMAL 0 True False GtkLabel label173 There is no skeleton for this map. Calculate a skeleton now? GTK_JUSTIFY_CENTER False 0.5 0.5 16 3 0 False False GtkDialog merge_molecules_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox57 False 0 GtkHBox Dialog:action_area dialog-action_area57 10 True 5 0 False True GTK_PACK_END GtkHBox hbox89 False 0 0 True True GtkButton merge_molecules_ok_button True clicked on_merge_molecules_ok_button_clicked Fri, 18 Jun 2004 14:57:42 GMT Merge GTK_RELIEF_NORMAL 0 True False GtkButton merge_molecules_cancel_button True clicked on_merge_molecules_cancel_button_clicked Fri, 18 Jun 2004 14:57:36 GMT Cancel GTK_RELIEF_NORMAL 0 True False GtkFrame frame109 4 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox114 False 0 GtkLabel label178 Append/Insert Molecule(s): GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkScrolledWindow merge_molecuoes_scrolledwindow 287 103 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport7 GTK_SHADOW_IN GtkVBox merge_molecules_vbox False 0 Placeholder Placeholder Placeholder GtkLabel label179 into Molecule: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu merge_molecules_optionmenu True 0 0 False False GtkLabel label180 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkDialog mutate_sequence_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox58 False 0 GtkHBox Dialog:action_area dialog-action_area58 10 True 5 0 False True GTK_PACK_END GtkHBox hbox92 False 0 0 True True GtkButton mutate_sequence_ok_button True clicked on_mutate_sequence_ok_button_clicked Fri, 18 Jun 2004 15:14:04 GMT Mutate GTK_RELIEF_NORMAL 0 True False GtkButton fit_loop_ok_button False True clicked on_fit_loop_ok_button_clicked Mon, 21 Mar 2005 08:26:59 GMT Fit Loop GTK_RELIEF_NORMAL 0 True False GtkButton mutate_sequence_cancel_button True clicked on_mutate_sequence_cancel_button_clicked Fri, 18 Jun 2004 15:14:10 GMT Cancel GTK_RELIEF_NORMAL 0 True False GtkFrame frame110 8 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox116 False 0 GtkLabel function_for_molecule_label Mutate Molecule: GTK_JUSTIFY_CENTER False 7.45058e-09 0.5 0 0 0 False False GtkOptionMenu mutate_molecule_optionmenu 2 True 0 0 False False GtkHBox hbox90 2 False 0 0 True True GtkLabel label182 Chain ID: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu mutate_molecule_chain_optionmenu True 0 0 False False GtkHBox hbox91 2 False 0 0 True True GtkLabel label183 Residue numbers GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry mutate_molecule_resno_1_entry 50 True True True 0 0 False False GtkLabel label184 to GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry mutate_molecule_resno_2_entry 50 True True True 0 0 False False GtkLabel label185 (inclusive) GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame loop_fit_method_frame 4 False Using Method: 0 GTK_SHADOW_ETCHED_IN 7 True True GtkVBox vbox159 False 0 GtkLabel label245 Successive Peptides by Ramachandran search (this may not work well) GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False Placeholder Placeholder GtkLabel label186 to (single letter) sequence: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkScrolledWindow scrolledwindow12 4 GTK_POLICY_NEVER GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 False False GtkText mutate_molecule_sequence_text True True GtkLabel label187 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton mutate_sequence_do_autofit_checkbutton 4 True toggled on_mutate_sequence_do_autofit_checkbutton_toggled Sun, 01 May 2005 11:39:58 GMT Autofit the mutated residues? False True 0 False False GtkDialog bond_parameters_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox59 False 0 GtkHBox Dialog:action_area dialog-action_area59 2 True 0 0 True True GTK_PACK_END GtkHBox hbox105 False 0 0 False False GtkButton bond_parameters_apply_button 4 True clicked on_bond_parameters_apply_button_clicked Fri, 23 Jul 2004 17:01:37 GMT Apply GTK_RELIEF_NORMAL 2 True True GtkButton bond_parameters_ok_button 4 True clicked on_bond_parameters_ok_button_clicked Fri, 23 Jul 2004 17:01:47 GMT OK GTK_RELIEF_NORMAL 2 True True GtkButton bond_parameters_cancel_button 4 True clicked on_bond_parameters_cancel_button_clicked Fri, 23 Jul 2004 17:01:57 GMT Close GTK_RELIEF_NORMAL 2 True True GtkVBox vbox117 False 0 0 True True Placeholder GtkHBox hbox93 6 False 0 5 True True GtkLabel label189 Molecule: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu bond_parameters_molecule_optionmenu True 0 0 False False GtkLabel label190 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame frame111 8 Molecule Bond Width: 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox118 False 0 GtkHBox hbox94 False 0 0 True True GtkOptionMenu bond_parameters_bond_width_optionmenu True 0 0 False False GtkLabel label191 pixels GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame frame112 8 Draw Hydrogens? 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox119 False 0 GtkRadioButton draw_hydrogens_yes_radiobutton True toggled on_draw_hydrogens_yes_radiobutton_toggled Wed, 21 Jul 2004 17:00:09 GMT Yes False True draw_hydrogens 0 False False GtkRadioButton draw_hydrogens_no_radiobutton True toggled on_draw_hydrogens_no_radiobutton_toggled Wed, 21 Jul 2004 17:00:15 GMT No False True draw_hydrogens 0 False False GtkFrame ncs_frame 8 False False Draw Non-Crystallographic Ghosts? 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox146 False 0 GtkRadioButton draw_ncs_ghosts_yes_radiobutton Note that the sequences must match exactly for NCS ghosts to be generated True toggled on_draw_ncs_ghosts_yes_radiobutton_toggled Thu, 04 Nov 2004 11:16:51 GMT Yes True True ncs_ghosts_gr 0 False False GtkRadioButton draw_ncs_ghosts_no_radiobutton True toggled on_draw_ncs_ghosts_no_radiobutton_toggled Thu, 04 Nov 2004 11:16:43 GMT No False True ncs_ghosts_gr 0 False False GtkDialog renumber_residue_range_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox60 False 0 GtkHBox Dialog:action_area dialog-action_area60 7 True 6 0 False True GTK_PACK_END GtkHBox hbox98 True 0 0 True True GtkButton renumber_residue_range_ok_button True clicked on_renumber_residue_range_ok_button_clicked Wed, 21 Jul 2004 17:15:06 GMT Renumber GTK_RELIEF_NORMAL 20 False True GtkButton renumber_residue_range_cancel_button True clicked on_renumber_residue_range_cancel_button_clicked Wed, 21 Jul 2004 17:15:11 GMT Cancel GTK_RELIEF_NORMAL 20 False True GtkFrame frame113 8 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox120 False 0 GtkLabel label192 Renumber Residue Range of Molecule: GTK_JUSTIFY_CENTER False 0.04 0.5 3 5 0 False False GtkOptionMenu renumber_residue_range_molecule_optionmenu 2 True 0 0 False False GtkHBox hbox95 False 0 0 True True GtkLabel label193 Chain ID: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu renumber_residue_range_chain_optionmenu True 0 0 False False GtkHBox hbox96 False 0 0 True True GtkLabel label194 Residue numbers: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry renumber_residue_range_resno_1_entry 60 True True True 0 0 False True GtkLabel label195 to GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry renumber_residue_range_resno_2_entry 60 True True True 0 0 False True GtkLabel label196 (inclusive) GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkHBox hbox97 False 0 0 True True GtkLabel label197 Offset: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry renumber_residue_range_offset_entry 60 e.g. an offset of -10 will renumber residues 33 to 36 as 23 to 36 True True True 0 0 False True GtkDialog add_OXT_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox61 False 0 GtkHBox Dialog:action_area dialog-action_area61 10 True 5 0 False True GTK_PACK_END GtkHBox hbox99 True 0 0 True True GtkButton add_OXT_ok_button True clicked on_add_OXT_ok_button_clicked Wed, 21 Jul 2004 17:37:59 GMT Add it GTK_RELIEF_NORMAL 8 False True GtkButton add_OXT_cancel_button True clicked on_add_OXT_cancel_button_clicked Wed, 21 Jul 2004 17:38:16 GMT Cancel GTK_RELIEF_NORMAL 8 False True GtkFrame frame114 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox121 False 0 GtkLabel label198 Add OXT to Chain: GTK_JUSTIFY_CENTER False 0.06 0.5 0 0 0 False False GtkHBox hbox101 False 0 0 True True GtkLabel label199 Molecule: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu add_OXT_molecule_optionmenu True 0 0 False False GtkHBox hbox102 False 0 0 True True GtkLabel label200 Chain: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu add_OXT_chain_optionmenu True 0 0 False False GtkFrame frame115 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox122 False 0 GtkHBox hbox103 False 0 0 True True GtkRadioButton add_OXT_c_terminus_radiobutton True toggled on_add_OXT_c_terminus_radiobutton_toggled Wed, 21 Jul 2004 17:38:49 GMT At C terminus False True add_OXT 0 False False Placeholder GtkHBox add_OXT_residue_hbox False 0 0 True True GtkRadioButton add_OXT_residue_radiobutton True toggled on_add_OXT_residue_radiobutton_toggled Wed, 21 Jul 2004 17:38:44 GMT At Residue: False True add_OXT 0 False False GtkEntry add_OXT_residue_entry 60 True True True 0 0 False True GtkDialog ligand_no_blobs_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox62 False 0 GtkHBox Dialog:action_area dialog-action_area62 10 True 5 0 False True GTK_PACK_END GtkHBox hbox106 False 0 0 True True GtkButton ligand_no_blobs_OK_button True True True True clicked on_ligand_no_blobs_OK_button_clicked Mon, 16 Aug 2004 18:19:38 GMT OK! GTK_RELIEF_NORMAL 0 True True Placeholder GtkFrame frame117 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label203 Coot found no unexplained blobs GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 GtkDialog new_close_molecules_dialog 2 GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox67 False 0 GtkHBox Dialog:action_area dialog-action_area67 10 True 5 0 False True GTK_PACK_END GtkHBox hbox108 False 0 0 True True GtkButton new_delete_molecules_ok_button 4 True clicked on_new_delete_molecules_ok_button_clicked Tue, 17 Aug 2004 09:37:41 GMT Delete Marked Molecules & Maps GTK_RELIEF_NORMAL 0 False False GtkButton new_delete_molecules_cancel_button 4 True clicked on_new_delete_molecules_cancel_button_clicked Tue, 17 Aug 2004 09:37:45 GMT Cancel GTK_RELIEF_NORMAL 0 False False GtkFrame frame121 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox126 False 0 GtkHBox hbox107 3 False 0 0 False True GtkLabel label209 Delete? GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkLabel label210 Name GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkScrolledWindow scrolledwindow16 335 140 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport9 GTK_SHADOW_IN GtkVBox new_delete_molecules_vbox False 0 Placeholder Placeholder Placeholder GtkDialog unmodelled_blobs_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox68 False 0 GtkHBox Dialog:action_area hbox109 10 True 5 0 False True GTK_PACK_END Placeholder GtkHBox hbox110 False 0 0 True True GtkButton find_blobs_ok_button True True True True clicked on_find_blobs_ok_button_clicked Tue, 17 Aug 2004 12:48:08 GMT Find Blobs GTK_RELIEF_NORMAL 0 True True GtkButton find_blobs_cancel_button True True clicked on_find_blobs_cancel_button_clicked Tue, 17 Aug 2004 12:48:20 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkVBox vbox127 False 0 0 True True GtkVBox vbox128 False 0 0 True True GtkFrame frame122 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox find_blobs_map_vbox 3 False 0 GtkLabel label211 Select Map: GTK_JUSTIFY_LEFT False 0.5 0.5 0 0 0 False False Placeholder GtkFrame frame123 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox find_blobs_protein_vbox 3 False 0 GtkLabel label212 Select Protein Model: GTK_JUSTIFY_LEFT False 0.5 0.5 0 0 0 False False Placeholder GtkFrame frame124 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox131 3 False 0 GtkLabel label213 Find Blobs above: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkHBox hbox111 False 0 0 True True GtkEntry find_blobs_peak_level_entry 36 Note that this is sigma of the map after it has been masked by the protein. 1.8 sigma seems good for a 2Fo-Fc style map and about 3.0 for a difference map. True True True 0 6 False True GtkLabel label214 sigma GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False Placeholder GtkDialog chiral_restraints_problem_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox69 False 0 GtkHBox Dialog:action_area dialog-action_area68 10 True 5 0 False True GTK_PACK_END GtkButton chiral_restraints_problem_ok_button True clicked on_chiral_restraints_problem_ok_button_clicked Thu, 19 Aug 2004 12:19:50 GMT OK GTK_RELIEF_NORMAL 0 False True GtkFrame frame125 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel chiral_volume_restraints_problem_label Problem finding restraints! (see console) GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 GtkDialog check_waters_diff_map_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox70 False 0 GtkHBox Dialog:action_area dialog-action_area69 10 True 5 0 False True GTK_PACK_END GtkHBox hbox112 False 0 0 True True GtkButton check_waters_diff_map_ok_button 4 True True True True clicked on_check_waters_diff_map_ok_button_clicked Thu, 19 Aug 2004 17:27:09 GMT Check Waters GTK_RELIEF_NORMAL 0 False False GtkButton check_waters_diff_map_cancel_button 4 True True clicked on_check_waters_diff_map_cancel_button_clicked Thu, 19 Aug 2004 17:27:14 GMT Cancel GTK_RELIEF_NORMAL 0 True False GtkVBox vbox132 False 0 0 True True GtkVBox vbox133 False 0 0 True True GtkFrame frame126 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox check_waters_diff_map_map_vbox 3 False 0 GtkLabel label216 Select Difference Map: GTK_JUSTIFY_LEFT False 0.5 0.5 0 0 0 False False GtkFrame no_difference_maps_frame False 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label220 WARNING:: No Difference Maps Available! GTK_JUSTIFY_CENTER False 0.5 0.5 4 0 Placeholder GtkFrame frame127 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox check_waters_diff_map_model_vbox 3 False 0 GtkLabel label217 Select Model with Waters: GTK_JUSTIFY_LEFT False 0.5 0.5 0 0 0 False False GtkFrame no_models_with_waters_frame False 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label221 WARNING:: No Models with Waters Available! GTK_JUSTIFY_CENTER False 0.5 0.5 4 0 Placeholder Placeholder Placeholder GtkDialog interesting_waters_by_difference_map_check_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox71 False 0 GtkHBox Dialog:action_area dialog-action_area70 10 True 5 0 False True GTK_PACK_END GtkButton interesting_waters_by_difference_map_check_ok_button True clicked on_interesting_waters_by_difference_map_check_ok_button_clicked Thu, 19 Aug 2004 18:39:08 GMT Cancel GTK_RELIEF_NORMAL 0 False False GtkScrolledWindow scrolledwindow17 180 160 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport10 GTK_SHADOW_IN GtkVBox interesting_waters_by_difference_map_check_vbox False 0 Placeholder Placeholder Placeholder GtkDialog nothing_bad_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox72 False 0 GtkHBox Dialog:action_area dialog-action_area71 10 True 5 0 False True GTK_PACK_END GtkButton nothing_bad_ok_button True True True True clicked on_nothing_bad_ok_button_clicked Thu, 19 Aug 2004 18:53:31 GMT OK GTK_RELIEF_NORMAL 0 False True GtkFrame frame128 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel nothing_bad_label Nothing Bad GTK_JUSTIFY_CENTER False 0.5 0.5 80 40 GtkDialog skeletonize_map_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox73 False 0 GtkHBox Dialog:action_area dialog-action_area72 10 True 5 0 False True GTK_PACK_END GtkHBox hbox113 False 0 0 True True GtkButton skeletonize_map_dialog_ok_button True clicked on_skeletonize_map_dialog_ok_button_clicked Tue, 24 Aug 2004 12:03:07 GMT Skeletonize GTK_RELIEF_NORMAL 10 False False GtkButton skeletonize_map_dialog_cancel_button True clicked on_skeletonize_map_dialog_cancel_button_clicked Tue, 24 Aug 2004 12:03:11 GMT Cancel GTK_RELIEF_NORMAL 10 False False GtkFrame frame130 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox134 False 0 GtkLabel label218 You need a skeleton to use baton building. Which map do you want to skeletonize? GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu skeletonize_map_optionmenu 2 True 0 0 False False GtkDialog antialiasing_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox74 False 0 GtkHBox Dialog:action_area dialog-action_area73 10 True 5 0 False True GTK_PACK_END GtkButton antialiasing_dialog_ok_button True True True True clicked on_antialiasing_dialog_ok_button_clicked Sat, 04 Sep 2004 00:03:17 GMT OK GTK_RELIEF_NORMAL 0 True True GtkFrame frame131 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox135 242 False 0 GtkLabel label219 Antialias Lines? GTK_JUSTIFY_CENTER False 0.5 0.5 9 7 0 False False GtkFrame frame132 12 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox136 False 0 GtkRadioButton antialias_dialog_yes_radiobutton True toggled on_antialias_dialog_yes_radiobutton_toggled Fri, 03 Sep 2004 23:36:00 GMT Yes False True antialias_gr 0 False False GtkRadioButton antialias_dialog_no_radiobutton True toggled on_antialias_dialog_no_radiobutton_toggled Fri, 03 Sep 2004 23:35:54 GMT No True True antialias_gr 0 False False GtkDialog geometry_graphs_dialog destroy on_geometry_graphs_dialog_destroy Wed, 08 Sep 2004 09:10:59 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox75 False 0 GtkHBox Dialog:action_area dialog-action_area74 10 True 5 0 False True GTK_PACK_END GtkButton geometry_graphs_ok_button True True True True clicked on_geometry_graphs_ok_button_clicked Sun, 05 Sep 2004 06:11:17 GMT OK GTK_RELIEF_NORMAL 0 False False GtkVBox vbox197 False 0 0 True True GtkLabel geometry_graphs_label Graph: GTK_JUSTIFY_CENTER False 0.05 0.5 0 0 2 False False GtkScrolledWindow geometry_graphs_scrolledwindow GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport geometry_graphs_viewport GTK_SHADOW_IN Placeholder GtkFileSelection save_symmetry_coords_fileselection 10 destroy on_save_symmetry_coords_fileselection_destroy Fri, 25 Aug 2006 09:25:29 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button save_symmetry_coords_fileselection_ok_button True True clicked on_save_symmetry_coords_fileselection_ok_button_clicked Fri, 17 Sep 2004 06:27:27 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button save_symmetry_coords_fileselection_cancel_button True True clicked on_save_symmetry_coords_fileselection_cancel_button_clicked Fri, 17 Sep 2004 06:27:59 GMT Cancel GTK_RELIEF_NORMAL GtkDialog stereo_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox76 False 0 GtkHBox Dialog:action_area dialog-action_area75 10 True 5 0 False True GTK_PACK_END GtkButton stereo_dialog_ok_button True True True True clicked on_stereo_dialog_ok_button_clicked Tue, 05 Oct 2004 09:28:02 GMT OK GTK_RELIEF_NORMAL 0 True True GtkFrame frame133 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox137 False 0 GtkLabel label222 View Mode GTK_JUSTIFY_CENTER False 0.5 0.5 0 7 0 False False GtkFrame frame134 14 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox138 False 0 GtkRadioButton stereo_dialog_mono_radiobutton True toggled on_stereo_dialog_mono_radiobutton_toggled Tue, 05 Oct 2004 09:40:17 GMT Mono False True stereo_gr 0 False False GtkRadioButton stereo_dialog_hardware_stereo_radiobutton True toggled on_stereo_dialog_hardware_stereo_radiobutton_toggled Tue, 05 Oct 2004 09:40:05 GMT Hardware Stereo False True stereo_gr 0 False False GtkRadioButton stereo_dialog_side_by_side_stereo_crosseyed_radiobutton True toggled on_stereo_dialog_side_by_side_stereo_crosseyed_radiobutton_toggled Tue, 30 Jan 2007 16:49:41 GMT Side by Side Stereo False True stereo_gr 0 False False GtkRadioButton stereo_dialog_side_by_side_stereo_walleyed_radiobutton True toggled on_stereo_dialog_side_by_side_stereo_walleyed_radiobutton_toggled Tue, 30 Jan 2007 16:50:14 GMT Side by Side (Wall Eyed) False True stereo_gr 0 False False GtkDialog preferences destroy on_preferences_destroy Fri, 08 Oct 2004 08:08:51 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox77 False 0 GtkHBox Dialog:action_area dialog-action_area76 10 True 5 0 False True GTK_PACK_END GtkHBox hbox115 False 0 0 True True Placeholder GtkButton preferences_ok_button True clicked on_preferences_ok_button_clicked Fri, 08 Oct 2004 08:01:59 GMT OK GTK_RELIEF_NORMAL 0 True True Placeholder GtkHBox hbox114 False 0 0 True True GtkFrame frame137 3 0 GTK_SHADOW_ETCHED_IN 0 True True Placeholder GtkNotebook notebook3 True True True GTK_POS_TOP False 2 2 False 0 True True Placeholder GtkLabel Notebook:tab label223 Bond Parameters GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 GtkFrame frame135 0 GTK_SHADOW_ETCHED_IN GtkVBox vbox139 False 0 GtkLabel label226 Mark Cis-Peptides as Bad in Geometry Graph? GTK_JUSTIFY_CENTER False 0.5 0.5 0 9 0 False False GtkFrame frame136 10 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox140 False 0 GtkRadioButton preferences_geometry_cis_peptide_bad_yes_radiobutton True toggled on_preferences_geometry_cis_peptide_bad_yes_radiobutton_toggled Fri, 08 Oct 2004 08:02:06 GMT Yes False True preferences_geometry_cis_peptide_gr 0 False False GtkRadioButton preferences_geometry_cis_peptide_bad_no_radiobutton True toggled on_preferences_geometry_cis_peptide_bad_no_radiobutton_toggled Fri, 08 Oct 2004 08:02:12 GMT No False True preferences_geometry_cis_peptide_gr 0 False False GtkLabel Notebook:tab label224 Geometry GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 Placeholder GtkLabel Notebook:tab label225 Other GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 GtkDialog diff_map_peaks_dialog destroy on_diff_map_peaks_dialog_destroy Thu, 06 Oct 2005 10:32:16 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox78 False 0 GtkHBox Dialog:action_area dialog-action_area77 10 True 5 0 False True GTK_PACK_END GtkButton diff_map_peaks_dialog_ok_button True clicked on_diff_map_peaks_dialog_ok_button_clicked Mon, 18 Oct 2004 09:23:40 GMT OK GTK_RELIEF_NORMAL 2 True True GtkScrolledWindow scrolledwindow18 310 280 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport11 GTK_SHADOW_IN GtkVBox diff_map_peaks_vbox 2 False 0 Placeholder Placeholder Placeholder GtkDialog generate_diff_map_peaks_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox79 False 0 GtkHBox Dialog:action_area dialog-action_area78 10 True 5 0 False True GTK_PACK_END GtkHBox hbox116 False 0 0 True True GtkButton generate_diff_map_peaks_ok_button True True True True clicked on_generate_diff_map_peaks_ok_button_clicked Thu, 21 Oct 2004 12:34:35 GMT OK GTK_RELIEF_NORMAL 6 True True GtkButton generate_diff_map_peaks_cancel_button True True clicked on_generate_diff_map_peaks_cancel_button_clicked Thu, 21 Oct 2004 12:34:43 GMT Cancel GTK_RELIEF_NORMAL 6 True True GtkFrame frame138 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox141 False 0 GtkFrame frame139 6 Select Difference Map 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox generate_diff_map_peaks_map_vbox False 0 GtkFrame no_difference_maps_frame False 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label227 WARNING:: No Difference Maps Available! GTK_JUSTIFY_CENTER False 0.5 0.5 10 0 Placeholder GtkFrame frame140 6 Select Model 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox generate_diff_map_peaks_model_vbox False 0 GtkFrame no_models_frame False 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label228 WARNING:: No Models Available GTK_JUSTIFY_CENTER False 0.5 0.5 10 0 Placeholder GtkFrame frame141 6 Sigma Level 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox117 False 0 GtkLabel label229 Find Peaks above GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry generate_diff_map_peaks_sigma_level_entry 75 True True True 0 0 False False GtkLabel label230 sigma GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame negative_level_frame 6 Which Peaks? 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox165 False 0 GtkCheckButton generate_diff_map_peaks_positive_level_checkbutton True Find Positive Peaks? True True 0 False False GtkCheckButton generate_diff_map_peaks_negative_level_checkbutton True Find Negative Peaks Also? True True 0 False False GtkDialog ncs_maps_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox80 False 0 GtkHBox Dialog:action_area dialog-action_area79 10 True 5 0 False True GTK_PACK_END GtkHBox hbox118 False 0 0 True True GtkButton ncs_maps_ok_button True clicked on_ncs_maps_ok_button_clicked Thu, 04 Nov 2004 17:58:20 GMT OK GTK_RELIEF_NORMAL 6 True True GtkButton ncs_maps_cancel_button True clicked on_ncs_maps_cancel_button_clicked Thu, 04 Nov 2004 17:58:13 GMT Cancel GTK_RELIEF_NORMAL 6 True True GtkFrame frame143 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox147 False 0 GtkFrame frame146 6 Select Model 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox149 False 0 GtkFrame no_models_frame False 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label232 WARNING:: No Models with NCS Available GTK_JUSTIFY_CENTER False 0.5 0.5 10 0 GtkVBox ncs_maps_models_vbox False 0 0 True True Placeholder GtkFrame frame144 6 Select Map 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox148 False 0 GtkFrame no_maps_frame False 0 GTK_SHADOW_ETCHED_IN 0 True True GtkLabel label231 WARNING:: No Maps Available! GTK_JUSTIFY_CENTER False 0.5 0.5 10 0 GtkVBox ncs_maps_maps_vbox False 0 0 True True Placeholder GtkWindow popup_info_window GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False GtkFrame frame147 10 0 GTK_SHADOW_ETCHED_IN GtkLabel info_label Sample text. GTK_JUSTIFY_CENTER False 0.5 0.5 10 10 GtkDialog pointer_distances_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox81 False 0 GtkHBox Dialog:action_area dialog-action_area80 10 True 5 0 False True GTK_PACK_END GtkButton pointer_distances_ok_button True clicked on_pointer_distances_ok_button_clicked Mon, 08 Nov 2004 13:49:56 GMT OK GTK_RELIEF_NORMAL 6 True False GtkFrame frame148 6 225 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox150 False 0 GtkCheckButton pointer_distances_checkbutton 6 True toggled on_pointer_distances_checkbutton_toggled Mon, 08 Nov 2004 13:49:50 GMT Show Pointer Distances False True 0 False False GtkFrame pointer_distances_frame 2 36 0 GTK_SHADOW_ETCHED_IN 0 True True GtkTable table2 2 3 False 0 0 GtkLabel label233 Min Distance GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 1 0 1 0 0 False False False False True False GtkLabel label234 Max Distance GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 1 1 2 0 0 False False False False True False GtkLabel label235 Angstroms GTK_JUSTIFY_CENTER False 0 0.5 0 0 2 3 0 1 0 0 False False False False True False GtkLabel label236 Angstroms GTK_JUSTIFY_CENTER False 0 0.5 0 0 2 3 1 2 0 0 False False False False True False GtkEntry pointer_distances_min_dist_entry 36 True True True 0 1 2 0 1 0 0 True False False False True False GtkEntry pointer_distances_max_dist_entry 36 True True True 0 1 2 1 2 0 0 True False False False True False GtkDialog align_and_mutate_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox82 False 0 GtkHBox Dialog:action_area dialog-action_area81 10 True 5 0 False True GTK_PACK_END GtkHBox hbox120 False 0 0 True True GtkButton align_and_mutate_ok_button True clicked on_align_and_mutate_ok_button_clicked Tue, 30 Nov 2004 12:12:04 GMT Apply Sequence to Model GTK_RELIEF_NORMAL 6 False False GtkButton align_and_mutate_cancel_button True clicked on_align_and_mutate_cancel_button_clicked Tue, 30 Nov 2004 12:12:00 GMT Cancel GTK_RELIEF_NORMAL 10 False False GtkFrame frame149 6 335 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox151 False 0 GtkLabel label239 Align and Mutate Molecule: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkOptionMenu align_and_mutate_molecule_optionmenu True 0 0 False False GtkHBox hbox121 2 False 0 0 True True GtkLabel label240 Chain ID: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu align_and_mutate_chain_optionmenu True 0 0 False False GtkLabel label241 to (single letter) sequence: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkScrolledWindow scrolledwindow19 90 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkText align_and_mutate_sequence_text True True GtkCheckButton align_and_mutate_autofit_checkbutton True Autofit the mutated residues? False True 0 False False GtkDialog ramachandran_plot_differences_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox83 False 0 GtkHBox Dialog:action_area dialog-action_area82 10 True 5 0 False True GTK_PACK_END GtkHBox hbox122 True 0 0 True True GtkButton ramachandran_plot_differences_ok_button 6 True True True clicked on_ramachandran_plot_differences_ok_button_clicked Sat, 04 Dec 2004 20:25:05 GMT OK GTK_RELIEF_NORMAL 0 True True GtkButton ramachandran_plot_differences_cancel_button 6 True True clicked on_ramachandran_plot_differences_cancel_button_clicked Sat, 04 Dec 2004 20:33:00 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkVBox vbox152 False 0 0 True True GtkLabel label242 Ramachandran Plot Differences GTK_JUSTIFY_CENTER False 0.5 0.5 0 11 0 False False GtkFrame frame150 4 First Structure 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox vbox153 False 0 GtkOptionMenu ramachandran_plot_differences_first_mol_optionmenu True 0 0 False False GtkFrame frame151 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox154 False 0 GtkCheckButton ramachandran_plot_differences_first_chain_checkbutton True toggled on_ramachandran_plot_differences_first_chain_checkbutton_toggled Sat, 04 Dec 2004 23:41:32 GMT Use Specific Chain False True 0 False False GtkOptionMenu ramachandran_plot_differences_first_chain_optionmenu True 0 0 False False GtkLabel label243 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame frame152 4 Second Structure 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox vbox155 False 0 GtkOptionMenu ramachandran_plot_differences_second_mol_optionmenu True 0 0 False False GtkFrame frame153 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox156 False 0 GtkCheckButton ramachandran_plot_differences_second_chain_checkbutton True toggled on_ramachandran_plot_differences_second_checkbutton_toggled Sat, 04 Dec 2004 23:41:42 GMT Use Specific Chain False True 0 False False GtkOptionMenu ramachandran_plot_differences_second_chain_optionmenu True 0 0 False False GtkDialog checked_waters_baddies_dialog destroy on_checked_waters_baddies_dialog_destroy Thu, 22 Nov 2007 18:12:46 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox84 False 0 GtkHBox Dialog:action_area dialog-action_area83 10 True 5 0 False True GTK_PACK_END GtkButton checked_waters_baddies_cancel_button clicked on_checked_waters_baddies_cancel_button_clicked Sun, 05 Dec 2004 18:25:56 GMT Cancel GTK_RELIEF_NORMAL 0 True True GtkScrolledWindow scrolledwindow20 300 190 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport12 GTK_SHADOW_IN GtkVBox checked_waters_baddies_vbox 26 False 0 Placeholder Placeholder GtkDialog nucleic_acid_base_chooser_dialog destroy on_nucleic_acid_base_chooser_dialog_destroy Tue, 05 Apr 2005 11:12:42 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox85 False 0 GtkHBox Dialog:action_area dialog-action_area84 10 True 5 0 False True GTK_PACK_END GtkButton base_chooser_cancel_button True clicked on_base_chooser_cancel_button_clicked Tue, 05 Apr 2005 10:11:14 GMT Cancel GTK_RELIEF_NORMAL 2 True True GtkFrame frame155 4 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox160 False 0 GtkButton base_chooser_A_button 2 True clicked on_base_chooser_A_button_clicked Tue, 05 Apr 2005 10:10:28 GMT Adenine (A) GTK_RELIEF_NORMAL 0 False False GtkButton base_chooser_C_button 2 True clicked on_base_chooser_C_button_clicked Tue, 05 Apr 2005 10:10:35 GMT Cytosine (C) GTK_RELIEF_NORMAL 0 False False GtkButton base_chooser_G_button 2 True clicked on_base_chooser_G_button_clicked Tue, 05 Apr 2005 10:10:39 GMT Guanine (G) GTK_RELIEF_NORMAL 0 False False GtkButton base_chooser_T_button 2 True clicked on_base_chooser_T_button_clicked Tue, 05 Apr 2005 10:10:44 GMT Thymine (T) GTK_RELIEF_NORMAL 0 False False GtkButton base_chooser_U_button 2 True clicked on_base_chooser_U_button_clicked Tue, 05 Apr 2005 10:10:49 GMT Uracil (U) GTK_RELIEF_NORMAL 0 False False GtkDialog change_chain_id_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox86 False 0 GtkHBox Dialog:action_area dialog-action_area85 10 True 5 0 False True GTK_PACK_END GtkHBox hbox124 False 0 0 True True GtkButton change_chains_rechain_button True clicked on_change_chains_rechain_button_clicked Thu, 07 Apr 2005 19:20:06 GMT Apply New Chain ID GTK_RELIEF_NORMAL 20 True True GtkButton change_chain_cancel_button True clicked on_change_chain_cancel_button_clicked Thu, 07 Apr 2005 19:20:13 GMT Cancel GTK_RELIEF_NORMAL 20 True True GtkFrame frame156 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox161 False 0 GtkLabel label246 Change Chain ID in Molecule: GTK_JUSTIFY_CENTER False 0 0.5 0 4 0 False False GtkOptionMenu change_chain_id_molecule_optionmenu True 0 0 False False GtkLabel label248 From: GTK_JUSTIFY_CENTER False 0 0.5 0 0 2 False False GtkHBox hbox125 False 0 0 True True GtkLabel label247 Chain ID: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu change_chain_id_chain_optionmenu True 0 0 False False GtkFrame frame157 Using Residue Selection: 0 GTK_SHADOW_ETCHED_IN 2 True True GtkVBox vbox162 False 0 GtkHBox hbox126 False 0 0 True True GtkRadioButton change_chain_residue_range_no_radiobutton True toggled on_change_chain_residue_range_no_radiobutton_toggled Tue, 26 Apr 2005 14:05:23 GMT Whole Chain False True change_chain_residues_gr 0 False False Placeholder GtkHBox hbox127 False 0 0 True True GtkRadioButton change_chain_residue_range_yes_radiobutton True toggled on_change_chain_residue_range_yes_radiobutton_toggled Tue, 26 Apr 2005 14:05:28 GMT Use Residue Range False True change_chain_residues_gr 0 False False GtkHBox change_chain_id_residue_range_hbox False False 0 0 True True GtkLabel label249 from GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry change_chain_residues_from_entry 40 True True True 0 0 False True GtkLabel label250 to GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry change_chains_residues_to_entry 40 True True True 0 0 False True GtkLabel label256 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkLabel label251 To: GTK_JUSTIFY_CENTER False 0 0.5 0 0 4 False False GtkHBox hbox129 False 0 2 True True GtkLabel label252 Chain ID: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry change_chains_new_chain_id 40 True True True 0 0 False True GtkDialog doc_urls_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox87 False 0 GtkHBox Dialog:action_area dialog-action_area86 10 True 5 0 False True GTK_PACK_END GtkButton on_line_documentation_ok_button True clicked on_on_line_documentation_ok_button_clicked Mon, 11 Apr 2005 07:24:56 GMT OK GTK_RELIEF_NORMAL 210 True True GtkFrame frame158 6 570 0 GTK_SHADOW_ETCHED_IN 0 True True GtkTable table3 4 3 False 0 0 GtkLabel label254 All in one page GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 1 0 1 0 0 False False False False True False GtkLabel label255 Sectioned GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 1 1 2 0 0 False False False False True False GtkEntry doc_1_entry True False True 0 http://www.ysbl.york.ac.uk/~emsley/coot/doc/user-manual.html 1 2 0 1 0 0 True False False False True False GtkEntry doc_2_entry True False True 0 http://www.ysbl.york.ac.uk/~emsley/coot/doc/chapters/user-manual_toc.html 1 2 1 2 0 0 True False False False True False GtkButton coot_doc_url_monolithic_button Open URL in web browser True clicked on_coot_doc_url_monolithic_button_clicked Sun, 05 Feb 2006 18:32:03 GMT Open GTK_RELIEF_NORMAL 2 3 0 1 0 0 False False False False True False GtkButton coot_doc_url_sectioned_button Open URL in Web Browser True clicked on_coot_doc_url_sectioned_button_clicked Sun, 05 Feb 2006 18:32:40 GMT Open GTK_RELIEF_NORMAL 2 3 1 2 0 0 False False False False True False GtkLabel label272 GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 1 2 3 0 0 False False False False True False GtkHSeparator hseparator12 1 2 2 3 0 0 False False False False True True GtkEntry coot_online_doc_search_entry True key_press_event on_coot_online_doc_search_entry_key_press_event Wed, 08 Feb 2006 10:15:49 GMT True True 0 1 2 3 4 0 0 True False False False True False GtkLabel label273 GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 1 3 4 0 0 False False False False True False GtkButton coot_online_doc_search_button Do a Google search True clicked on_coot_online_doc_search_button_clicked Wed, 08 Feb 2006 10:15:26 GMT Search GTK_RELIEF_NORMAL 2 3 3 4 0 0 False False False False True False GtkLabel label274 GTK_JUSTIFY_CENTER False 0 0.5 0 0 2 3 2 3 0 0 False False False False True False GtkFileSelection save_state_fileselection 10 destroy on_save_state_fileselection_destroy Fri, 25 Aug 2006 09:27:23 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button save_state_ok_button1 True True clicked on_save_state_ok_button1_clicked Mon, 25 Apr 2005 21:59:39 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button save_state_cancel_button1 True True clicked on_save_state_cancel_button1_clicked Mon, 25 Apr 2005 22:00:03 GMT Cancel GTK_RELIEF_NORMAL GtkDialog other_model_tools_dialog destroy on_other_model_tools_dialog_destroy Mon, 27 Jun 2005 16:24:32 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox89 False 0 GtkHBox Dialog:action_area dialog-action_area88 10 True 5 0 False True GTK_PACK_END GtkButton other_modelling_tools_close_button True clicked on_other_modelling_tools_close_button_clicked Mon, 27 Jun 2005 08:53:45 GMT Close GTK_RELIEF_NORMAL 0 False False GtkFrame frame160 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox163 6 False 0 GtkButton model_refine_dialog_find_ligands_button 1 True clicked on_model_refine_dialog_find_ligands_button_clicked Tue, 01 Jul 2003 10:58:45 GMT Find Ligands... GTK_RELIEF_NORMAL 0 False False GtkToggleButton cis_trans_conversion_toggle_button 1 Convert peptide: CIS -> TRANS or TRANS -> CIS... It depends on what you have currently True toggled on_cis_trans_conversion_toggle_button_toggled Mon, 27 Jun 2005 10:01:56 GMT Cis <-> Trans GTK_RELIEF_NORMAL False 0 False False GtkButton model_refine_dialog_baton_button 1 Make sure that you are about 3.8A away from where you wish to put your first atom before you start Baton Mode. True clicked on_model_refine_dialog_baton_button_clicked Tue, 22 Jul 2003 18:21:50 GMT Ca Baton Mode... GTK_RELIEF_NORMAL 0 False False GtkToggleButton model_refine_dialog_db_main_togglebutton 1 Use database of fragments to convert a set of C-alphas to mainchain atoms True toggled on_model_refine_dialog_db_main_togglebutton_toggled Tue, 17 Jun 2003 16:40:05 GMT Ca Zone -> Mainchain GTK_RELIEF_NORMAL False 0 False False GtkButton model_refine_dialog_add_OXT_button 1 True clicked on_model_refine_dialog_add_OXT_button_clicked Fri, 23 Jul 2004 10:31:42 GMT Add OXT to Residue... GTK_RELIEF_NORMAL 0 False False GtkToggleButton reverse_fragment_direction_togglebutton 1 Reverse direction of fragment, leaving only CAs True toggled on_reverse_fragment_direction_togglebutton_toggled Wed, 31 Aug 2005 04:54:57 GMT Reverse Direction GTK_RELIEF_NORMAL False 0 False False GtkButton place_helix_here_button 1 Place an ideal alpha helix about here and try to optimize position and orientation. Must have a map set for fitting. True clicked on_place_helix_here_button_clicked Sat, 10 Sep 2005 09:47:40 GMT Place Helix Here GTK_RELIEF_NORMAL 0 False False GtkButton other_tools_RNA_button 1 True clicked on_other_tools_RNA_button_clicked Sat, 06 May 2006 22:55:17 GMT Ideal DNA/RNA... GTK_RELIEF_NORMAL 0 False False GtkButton set_undo_molecule_button Choose the molecule number to which "Undo" actions occur. True clicked on_set_undo_molecule_button_clicked Tue, 07 Nov 2006 12:37:32 GMT Choose "Undo" Molecule... GTK_RELIEF_NORMAL 1 False False GtkFileSelection screendump_fileselection 10 destroy on_screendump_fileselection_destroy Fri, 25 Aug 2006 09:27:45 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False False True False True GtkButton FileSel:ok_button screendump_image_ok_button True True clicked on_screendump_image_ok_button_clicked Mon, 29 Aug 2005 21:18:10 GMT OK GTK_RELIEF_NORMAL GtkButton FileSel:cancel_button screendump_image_cancel_button True True clicked on_screendump_image_cancel_button_clicked Mon, 29 Aug 2005 21:18:54 GMT Cancel GTK_RELIEF_NORMAL GtkDialog symmetry_controller_dialog destroy on_symmetry_controller_dialog_destroy Fri, 08 May 2009 13:04:15 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox90 False 0 GtkHBox Dialog:action_area dialog-action_area89 10 True 5 0 False True GTK_PACK_END GtkButton symmetry_controller_ok_button True clicked on_symmetry_controller_ok_button_clicked Sun, 09 Oct 2005 22:25:05 GMT OK GTK_RELIEF_NORMAL 0 False False GtkVBox vbox167 False 0 0 True True Placeholder GtkScrolledWindow scrolledwindow24 328 200 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport symmetry_control_viewport GTK_SHADOW_IN GtkVBox symmetry_controller_vbox False 0 GtkFrame molecule_0_frame 6 False Molecule 0 (this frame not visible) 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox168 False 0 GtkCheckButton molecule_0_checkbutton True toggled on_molecule_0_checkbutton_toggled Sun, 09 Oct 2005 22:44:13 GMT Show Symmetry? False True 0 False False GtkFrame frame162 4 Display Options 0 GTK_SHADOW_ETCHED_IN 0 True True GtkTable table4 3 2 False 0 0 GtkRadioButton display_sphere_radiobutton_molecule_0 True toggled on_display_sphere_radiobutton_molecule_0_toggled Sun, 09 Oct 2005 22:43:27 GMT Display Sphere False True symm_display_mol_0_gr 0 1 0 1 0 0 False False False False True False GtkRadioButton display_all_radiobutton_molecule_0 True toggled on_display_all_radiobutton_molecule_0_toggled Sun, 09 Oct 2005 22:43:31 GMT Display All Molecule False True symm_display_mol_0_gr 0 1 1 2 0 0 False False False False True False GtkRadioButton display_CA_radiobutton_molecule_0 True toggled on_display_CA_radiobutton_molecule_0_toggled Sun, 09 Oct 2005 22:43:38 GMT Display as CAs False True symm_display_mol_0_gr 0 1 2 3 0 0 False False False False True False GtkRadioButton colour_symm_std_molecule_0 True toggled on_colour_symm_std_molecule_0_toggled Sun, 09 Oct 2005 22:43:52 GMT Standard Colouring False True symm_colour_mol_0_gr 1 2 0 1 0 0 False False False False True False GtkRadioButton colour_symm_by_symop_molecule_0 True toggled on_colour_symm_by_symop_molecule_0_toggled Sun, 09 Oct 2005 22:43:57 GMT Colour by Symop False True symm_colour_mol_0_gr 1 2 1 2 0 0 False False False False True False GtkRadioButton colour_symm_by_molecule_molecule_0 True toggled on_colour_symm_by_molecule_molecule_0_toggled Sun, 09 Oct 2005 22:44:04 GMT Colour by Molecule False True symm_colour_mol_0_gr 1 2 2 3 0 0 False False False False True False Placeholder Placeholder GtkDialog ncs_control_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox91 False 0 GtkHBox Dialog:action_area dialog-action_area90 10 True 5 0 False True GTK_PACK_END GtkButton ncs_control_ok_button True clicked on_ncs_control_ok_button_clicked Mon, 17 Oct 2005 20:51:32 GMT OK GTK_RELIEF_NORMAL 0 False False GtkVBox vbox170 False 0 0 True True GtkLabel label263 NCS Controller GTK_JUSTIFY_CENTER False 0.5 0.5 3 4 0 False False GtkScrolledWindow scrolledwindow25 289 170 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport19 GTK_SHADOW_IN GtkVBox ncs_control_vbox False 0 GtkFrame frame_molecule_N 6 False molecule N 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox176 False 0 GtkCheckButton ncs_controller_molecule_n_display_ncs_checkbutton True toggled on_ncs_controller_molecule_n_display_ncs_checkbutton_toggled Mon, 17 Oct 2005 23:32:15 GMT Display Non-cystallographic Ghosts False True 0 False False GtkHSeparator hseparator11 2 True True GtkHBox hbox134 False 0 0 True True GtkVBox vbox172 False 0 0 True True GtkLabel label264 Displayed Chains GTK_JUSTIFY_CENTER False 0.4 0.5 0 0 0 False False GtkVBox ncs_controller_molecule_n_display_chain_vbox False 0 0 True True GtkCheckButton ncs_controller_molecule_n_display_chain_ich_checkbutton Show this chain as a ghost chain? True toggled on_ncs_controller_molecule_n_display_chain_ich_checkbutton_toggled Mon, 17 Oct 2005 23:32:22 GMT Chain A False True 0 False False GtkCheckButton checkbutton4 True checkbutton4 False True 0 False False GtkCheckButton checkbutton5 True checkbutton5 False True 0 False False GtkVBox vbox174 False 0 0 True True GtkLabel label265 NCS Master Chain GTK_JUSTIFY_CENTER False 0.4 0.5 0 0 0 False False GtkVBox ncs_controller_molecule_n_vbox False 0 0 True True GtkRadioButton ncs_controller_ncs_master_chain_ich_radiobutton The chain to which operators and ghosts are generated from other chains True toggled on_ncs_controller_ncs_master_chain_ich_radiobutton_toggled Mon, 17 Oct 2005 23:32:31 GMT Chain A False True molecule_n_ncs_master_chain_gr 0 False False GtkRadioButton radiobutton4 True radiobutton4 False True molecule_n_ncs_master_chain_gr 0 False False GtkRadioButton radiobutton5 True radiobutton5 False True molecule_n_ncs_master_chain_gr 0 False False Placeholder Placeholder GtkDialog lsq_plane_dialog destroy on_lsq_plane_dialog_destroy Wed, 19 Oct 2005 13:50:09 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox92 False 0 GtkHBox Dialog:action_area dialog-action_area91 10 True 5 0 False True GTK_PACK_END GtkButton lsq_plane_ok_button True clicked on_lsq_plane_ok_button_clicked Wed, 19 Oct 2005 12:10:12 GMT OK GTK_RELIEF_NORMAL 0 True True GtkFrame lsq_plane_frame 6 Lsq Plane 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox177 False 0 GtkRadioButton lsq_plane_add_atom_radiobutton 6 True toggled on_lsq_plane_add_atom_radiobutton_toggled Wed, 19 Oct 2005 12:11:30 GMT Add Atom to Plane False True lsq_plane_atom_gr 0 False False GtkHBox hbox135 False 0 0 False False GtkLabel label266 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkButton lsq_plane_delete_last_atom_button True clicked on_lsq_plane_delete_last_atom_button_clicked Thu, 20 Oct 2005 07:33:19 GMT Delete Last Plane Atom GTK_RELIEF_NORMAL 0 False False GtkLabel label267 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkRadioButton lsq_plane_deviant_atom_radiobutton 6 True toggled on_lsq_plane_deviant_atom_radiobutton_toggled Wed, 19 Oct 2005 12:14:01 GMT Deviation of Atom False True lsq_plane_atom_gr 0 False False GtkDialog coords_colour_control_dialog destroy on_coords_colour_control_dialog_destroy Tue, 29 Nov 2005 20:26:27 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox93 False 0 GtkHBox Dialog:action_area dialog-action_area92 10 True 5 0 False True GTK_PACK_END GtkButton coord_colour_control_ok_button True True True clicked on_coord_colour_control_ok_button_clicked Tue, 29 Nov 2005 20:26:14 GMT OK GTK_RELIEF_NORMAL 0 True True GtkVBox vbox178 False 0 0 True True GtkLabel label268 Molecule Colours GTK_JUSTIFY_CENTER False 0.5 0.5 4 5 0 False False GtkScrolledWindow scrolledwindow26 130 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport viewport20 GTK_SHADOW_IN GtkVBox coords_colours_vbox False 0 GtkFrame frame_molecule_N 6 False Molecule N 0 GTK_SHADOW_ETCHED_IN 0 True True GtkHBox hbox136 False 0 GtkLabel label269 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkHScale coords_colour_hscale_mol_N True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 0 True True GtkLabel label270 degrees GTK_JUSTIFY_CENTER False 0.5 0.56 0 0 0 False False GtkLabel label271 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame frame116 4 Colour Map Rotation [Molecule Independent] 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox vbox123 False 9 GtkFrame frame173 2 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox192 False 0 GtkLabel label201 New molecule rotates colour map GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkHBox hbox119 False 0 0 True True GtkLabel label237 by GTK_JUSTIFY_CENTER False 0.5 0.95 0 0 0 False False GtkHScale bond_parameters_colour_rotation_hscale 40 True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0 0 True True GtkLabel label238 degrees GTK_JUSTIFY_CENTER False 0.5 0.95 0 0 0 False False GtkFrame frame172 2 0 GTK_SHADOW_ETCHED_IN 0 False False GtkCheckButton bond_parameters_rotate_colour_map_c_only_checkbutton 5 True toggled on_bond_parameters_rotate_colour_map_c_only_checkbutton_toggled Mon, 27 Feb 2006 13:33:31 GMT Change colour for Carbons only False True GtkDialog nucleotide_builder_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox94 False 0 GtkHBox Dialog:action_area dialog-action_area93 10 True 5 0 False True GTK_PACK_END GtkHBox hbox142 True 0 0 True True GtkButton ideal_rna_ok_button True clicked on_ideal_rna_ok_button_clicked Sat, 06 May 2006 22:56:27 GMT OK GTK_RELIEF_NORMAL 0 False False GtkButton ideal_rna_cancel_button True clicked on_ideal_rna_cancel_button_clicked Sat, 06 May 2006 22:56:40 GMT Cancel GTK_RELIEF_NORMAL 0 False False GtkVBox vbox179 False 0 0 True True GtkLabel label282 Nucleotide Builder GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkFrame frame164 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox180 False 0 GtkLabel label283 Nucleotide Type: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkOptionMenu nucleotide_builder_type_optionmenu True RNA DNA 0 0 False False GtkFrame frame165 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox181 False 0 GtkLabel label284 Form: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkOptionMenu nucleotide_builder_form_optionmenu True A B 0 0 False False GtkFrame frame166 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox182 False 0 GtkLabel label285 Strandedness: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkOptionMenu nucleotide_builder_strand_optionmenu True Double Stranded Single Stranded 0 0 False False GtkFrame frame167 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox183 False 0 GtkLabel label286 Sequence: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkEntry nucleotide_sequence True True True 0 0 False False GtkDialog move_molecule_here_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox95 False 0 GtkHBox Dialog:action_area dialog-action_area94 10 True 5 0 False True GTK_PACK_END GtkHBox hbox143 False 0 0 True True GtkButton move_molecule_here_ok_button True clicked on_move_molecule_here_ok_button_clicked Thu, 22 Jun 2006 16:29:37 GMT Move It GTK_RELIEF_NORMAL 6 False False GtkButton move_molecule_here_cancel_button True clicked on_move_molecule_here_cancel_button_clicked Thu, 22 Jun 2006 16:29:42 GMT Cancel GTK_RELIEF_NORMAL 6 False False GtkVBox vbox184 False 0 0 True True GtkLabel label287 Move Molecule Here: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu move_molecule_here_optionmenu True 0 6 False False GtkCheckButton move_molecule_here_big_molecules_checkbutton Where "big" means more than 400 atoms True toggled on_move_molecule_here_big_molecules_checkbutton_toggled Wed, 27 Jan 2010 14:53:09 GMT Move big molecules False True 0 False False GtkDialog monomer_search_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox96 False 0 GtkHBox Dialog:action_area dialog-action_area95 10 True 5 0 False True GTK_PACK_END GtkHBox hbox144 True 0 0 False True GtkButton monomer_library_search_dialog_cancel_button True clicked on_monomer_library_search_dialog_cancel_button_clicked Tue, 27 Jun 2006 00:12:34 GMT Close GTK_RELIEF_NORMAL 0 False False GtkVBox vbox185 False 0 0 True True GtkFrame frame168 0 GTK_SHADOW_ETCHED_IN 0 False False GtkVBox vbox186 False 0 GtkLabel label288 Search the Monomer Library GTK_JUSTIFY_CENTER False 0.5 0.5 4 5 0 False False GtkHBox hbox145 False 0 0 True True GtkLabel label291 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkLabel label289 Text: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry monomer_search_entry True key_press_event on_monomer_search_entry_key_press_event Tue, 27 Jun 2006 13:32:37 GMT True True 0 0 True True GtkButton monomer_library_search_button True clicked on_monomer_library_search_button_clicked Tue, 27 Jun 2006 12:11:59 GMT Search GTK_RELIEF_NORMAL 0 False False GtkLabel label290 GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCheckButton monomer_search_minimal_descriptions_checkbutton 3 True Include Monomers with Minimal Descriptions False True 0 False False GtkScrolledWindow scrolledwindow27 GTK_POLICY_ALWAYS GTK_POLICY_ALWAYS GTK_UPDATE_CONTINUOUS GTK_UPDATE_CONTINUOUS 0 True True GtkViewport monomer_search_results_viewport 300 80 GTK_SHADOW_IN GtkVBox monomer_search_results_vbox False 0 Placeholder GtkDialog least_squares_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox97 False 0 GtkHBox Dialog:action_area dialog-action_area96 10 True 5 0 False True GTK_PACK_END GtkHBox hbox146 True 0 0 True True GtkButton least_squares_ok_button 2 True clicked on_least_squares_ok_button_clicked Mon, 31 Jul 2006 15:10:54 GMT Fit GTK_RELIEF_NORMAL 0 False False GtkButton least_squares_cancel_button 2 True clicked on_least_squares_cancel_button_clicked Mon, 31 Jul 2006 15:10:51 GMT Cancel GTK_RELIEF_NORMAL 0 False False GtkVBox vbox187 False 0 0 True True GtkFrame frame170 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox189 False 0 GtkLabel label292 Reference Molecule: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkOptionMenu least_squares_reference_molecule_optionmenu True 0 0 False False GtkLabel label293 Moving Molecule: GTK_JUSTIFY_CENTER False 0 0.5 0 0 0 False False GtkOptionMenu least_squares_moving_molecule_optionmenu True 0 0 False False GtkFrame frame171 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox190 False 0 GtkHBox hbox147 False 0 0 True True GtkLabel label294 Reference Residue Range GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry least_squares_reference_range_1_entry 40 True True True 0 0 True True GtkLabel label295 to GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry least_squares_reference_range_2_entry 40 True True True 0 0 True True GtkLabel label296 Chain GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu least_squares_reference_chain_id True 0 0 False False GtkHBox hbox148 False 0 0 True True GtkLabel label297 Moving Residue Range GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry least_squares_moving_range_1_entry 40 True True True 0 0 True True GtkLabel label298 to GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry least_squares_moving_range_2_entry 40 True True True 0 0 True True GtkLabel label299 Chain GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu least_squares_moving_chain_id True 0 0 False False GtkFrame frame169 6 Match Atoms 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox188 False 0 GtkRadioButton least_squares_match_type_all_radiobutton True toggled on_least_squares_match_type_all_radiobutton_toggled Mon, 31 Jul 2006 15:04:25 GMT All Atoms True True least_square_fit_match_type_gr 0 False False GtkRadioButton least_squares_match_type_main_radiobutton True toggled on_least_squares_match_type_main_radiobutton_toggled Mon, 31 Jul 2006 15:04:30 GMT Mainchain False True least_square_fit_match_type_gr 0 False False GtkRadioButton least_squares_match_type_calpha_radiobutton True toggled on_least_squares_match_type_all_radiobutton_toggled Mon, 31 Jul 2006 15:04:33 GMT C-alphas False True least_square_fit_match_type_gr 0 False False GtkCheckButton least_squares_move_copy_checkbutton 6 True Move Copy of Moving Molecule False True 0 False False GtkWindow splash_screen_alternate_1_window GTK_WINDOW_POPUP GTK_WIN_POS_CENTER False False True False GtkPixmap pixmap2 coot-0.5-pre.xpm 0.5 0.5 0 0 True GtkDialog fixed_atom_dialog destroy on_fixed_atom_dialog_destroy Tue, 12 Feb 2008 14:02:44 GMT GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox98 False 0 GtkHBox Dialog:action_area dialog-action_area97 10 True 5 0 False True GTK_PACK_END GtkButton fixed_atom_close_button True clicked on_fixed_atom_close_button_clicked Fri, 01 Feb 2008 13:25:15 GMT Close GTK_RELIEF_NORMAL 0 False False GtkVBox vbox198 10 False 3 0 True True GtkToggleButton fix_atom_togglebutton True toggled on_fix_atom_togglebutton_toggled Fri, 01 Feb 2008 13:27:33 GMT Fix Atom GTK_RELIEF_NORMAL False 0 False False GtkToggleButton unfix_atom_togglebutton True toggled on_unfix_atom_togglebutton_toggled Fri, 01 Feb 2008 13:27:39 GMT Unfix Atom GTK_RELIEF_NORMAL False 0 False False GtkButton clear_fixed_atoms_button True clicked on_clear_fixed_atoms_button_clicked Fri, 01 Feb 2008 13:27:44 GMT Clear All Fixed Atoms GTK_RELIEF_NORMAL 0 False False GtkDialog add_reps_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox99 False 0 GtkHBox Dialog:action_area dialog-action_area98 10 True 5 0 False True GTK_PACK_END GtkHBox hbox155 True 2 0 True True GtkButton add_rep_add_rep_button True clicked on_add_rep_add_rep_button_clicked Mon, 10 Mar 2008 10:43:32 GMT Add Representation GTK_RELIEF_NORMAL 0 False False GtkButton add_rep_cancel_button True clicked on_add_rep_cancel_button_clicked Mon, 10 Mar 2008 10:43:39 GMT Cancel GTK_RELIEF_NORMAL 0 False False GtkVBox vbox199 False 0 0 True True GtkLabel label302 Additional Representation for GTK_JUSTIFY_CENTER False 0.5 0.5 0 5 0 False False GtkOptionMenu add_rep_molecule_optionmenu True 0 0 False False GtkFrame frame185 4 Representation Selection 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox200 False 0 GtkFrame frame186 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkRadioButton add_rep_radiobutton_position True By Position (this residue) False True add_reps_group GtkFrame frame187 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox201 False 0 GtkRadioButton add_rep_radiobutton_res_number True By Residue Number Specification False True add_reps_group 0 False False GtkHBox hbox158 False 0 0 True True GtkLabel label305 Chain ID: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry add_rep_chain_id_entry 31 True True True 0 0 False True GtkHBox hbox159 False 0 0 True True GtkLabel label306 From Residue Number GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry add_rep_resno_start_entry 50 True True True 0 0 False True GtkLabel label307 To Residue Number GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry add_rep_resno_end_entry 50 True True True 0 0 False True GtkHBox hbox160 False 0 0 True True GtkLabel label308 With Insertion Code GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry add_rep_ins_code_entry 37 True True True 0 0 False True GtkFrame frame188 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox202 False 0 GtkRadioButton add_rep_radiobutton_selection_string True By Selection String False True add_reps_group 0 False False GtkHBox hbox156 False 0 0 True True GtkLabel label303 Atom Selection: GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkEntry add_rep_selection_string_entry True True True 0 0 False True GtkFrame frame189 4 Representation Style 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox203 False 0 GtkFrame frame190 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkVBox vbox204 False 0 GtkRadioButton add_rep_rep_fat_bonds_radiobutton True Fat Bonds False True add_reps_rep_style_group 0 False False GtkHBox hbox157 False 0 0 True True GtkLabel label304 Bond Width GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkCombo combo1 False True False True False 0 False False GtkEntry GtkCombo:entry add_rep_bond_width_combobox True True True 0 GtkFrame frame191 6 0 GTK_SHADOW_ETCHED_IN 0 True True GtkRadioButton add_rep_rep_ball_and_stick_radiobutton True Ball & Stick False True add_reps_rep_style_group GtkDialog run_refmac_nolabels_help_dialog GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox100 False 0 GtkHBox Dialog:action_area dialog-action_area99 10 True 5 0 False True GTK_PACK_END GtkButton run_refmac_nolabels_help_dialog_ok_button True clicked on_run_refmac_nolabels_help_dialog_ok_button_clicked Sat, 03 May 2008 14:52:17 GMT OK GTK_RELIEF_NORMAL 0 False False GtkLabel label309 Refmac will guess which column label to use. However, if you want to have control over which column labels should be used in Refmac, you need to assign column labels when you read in an MTZ file. Then use the boxes above to select a Map Molecule and column labels. GTK_JUSTIFY_CENTER False 0.5 0.5 5 0 0 False False GtkDialog map_sharpening_dialog 350 GTK_WINDOW_TOPLEVEL GTK_WIN_POS_NONE False True True False GtkVBox Dialog:vbox dialog-vbox101 False 0 GtkHBox Dialog:action_area dialog-action_area100 10 True 5 0 False True GTK_PACK_END GtkHBox hbox161 True 0 0 True True GtkButton map_sharpening_ok_button True clicked on_map_sharpening_ok_button_clicked Mon, 25 May 2009 15:42:03 GMT OK GTK_RELIEF_NORMAL 0 True False GtkButton map_sharpening_cancel_button True clicked on_map_sharpening_cancel_button_clicked Mon, 25 May 2009 15:42:07 GMT Cancel GTK_RELIEF_NORMAL 0 True False GtkVBox vbox207 False 0 0 True True GtkLabel label310 Map to Sharpen GTK_JUSTIFY_CENTER False 0.5 0.5 0 0 0 False False GtkOptionMenu map_sharpening_optionmenu True 0 0 False False GtkAlignment alignment1 6 0.5 0.5 1 1 0 True True GtkHScale map_sharpening_hscale True True GTK_POS_TOP 1 GTK_UPDATE_CONTINUOUS 0 0 0 0 0 0