Program documentation
=====================

Main processing commands:

.. toctree::
   :maxdepth: 1

   dials_import
   dials_find_spots
   dials_index
   dials_refine_bravais_settings
   dials_reindex
   dials_refine
   dials_integrate
   dials_export
   idials


Utilities:

.. toctree::
   :maxdepth: 1

   dials_show
   dials_image_viewer
   dials_reciprocal_lattice_viewer
   dials_generate_mask
   dials_check_indexing_symmetry
   dials_discover_better_experimental_model
   dials_report
   dials_plot_scan_varying_crystal
   dials_find_spots_server
   dials_apply_mask
   dials_create_profile_model
   dials_estimate_gain
   dials_predict
   dials_merge_cbf
   dials_export_bitmaps
   dials_slice_sweep
   dials_compare_orientation_matrices
   dials_spot_counts_per_image
   dials_stereographic_projection
   dials_combine_experiments

Printable command line reference:

.. |cheatsheet|

.. raw:: html

  <div class="embedpdf">
  <iframe src="https://drive.google.com/file/d/0B0yDAeP5vfI7aW5ORWdORHVmOGs/preview"
  width=100% height=100%>
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  </iframe>
  </div>

.. |cheatsheet| raw:: html

  <a class="reference external" href="https://drive.google.com/file/d/0B0yDAeP5vfI7aW5ORWdORHVmOGs/preview" target="_blank">Open pdf in new tab</a>