The tarballs linked to this page are for use with CCP4 updater (ccp4um) in off-line mode (e.g. without network connection). You do not need them if your CCP4 update works normally through the internet.
Follow instructions below if you do intend to use the CCP4 updater in off-line mode. Skip step 1 if you have already installed CCP4 update No 4.
1. Replace the old version of $CCP4/bin/ccp4um-bin with the new one:
2. Download and un-compress the update directory:
Then, EITHER
3a. use the command line:
ccp4um -uri path-to-update-directory
OR
3b. use the graphic mode:
Launch ccp4um; answer "No" in the first dialog suggesting revision of proxy settings; press "OK" in the second dialog suggesting installation of updates from local update directory; navigate to the update directory in the file browser, select it and press "Choose". From this point on, ccp4um will operate as usual.
Update ID: 6.5.001
Date: 24.12.14
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| acedrg | added ccp4i task interface | yes | yes | yes | yes |
| further improvements | yes | yes | yes | yes | |
| ample | fixed executable path | yes | yes | yes | yes |
| ccp4-base | fixed setup script to unset unnecessary system variables | yes | yes | yes | yes |
| ccp4i | added acedrg | yes | yes | yes | yes |
| ccp4-progs | in pdbcur, added options to remove chain, TER record etc | yes | yes | yes | yes |
| crank2 | fixed interaction with pdbcur | yes | yes | yes | yes |
| documentation | updated for pdbcur and privateer | yes | yes | yes | yes |
| libccp4 | fixed ccp4 versioning, which, in particular, affected privateer | yes | yes | yes | yes |
| privateer | minor changes for i2 | yes | yes | yes | yes |
| xia2 | fixed -3d option | yes | yes | yes | - |
Update ID: 6.5.002
Date: 22.01.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| crank2 | several bug fixes, mainly related to the graphical interface and Crunch2 | yes | yes | yes | yes |
| clipper-progs | ctruncate - fixes for issue with twinning alpha calculation | yes | yes | yes | yes |
| cmapcoeff - fix for issues with anomalous calculation | yes | yes | yes | yes | |
| phaser | phaser 2.5.7 - update to 2.5.7 | yes | yes | yes | yes |
| blend | Fixed a bug in keywords management; now accepting both uppercase and lowercase. Fixed a bug for the calculation of aLCV. | yes | yes | yes | yes |
| privateer | Minor bugfixes | yes | yes | yes | yes |
| monomers | Several bug-fixes and addition of new compounds | yes | yes | yes | yes |
| ccp4-progs | zanuda: adjustments to changes in refmac output pdb-file; bypass for P1 refinement failure | yes | yes | yes | yes |
| ccp4i | MrSHELXE: temporarily switched off pdb- and mtz-files crosscheck | yes | yes | yes | yes |
| Fix for handling Protein/DNA complex sequences in Matthews interface | yes | yes | yes | yes | |
| Fixed bug in refmac interface, which caused the rigid body folder to be empty, and other folders to display incorrect fields | yes | yes | yes | yes | |
| documentation | Minor fixes | yes | yes | yes | yes |
| mrbump | Fix for sftools path length problem and Mac fix for MAFFT | yes | yes | yes | yes |
Update ID: 6.5.003
Date: 13.02.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| refmac5 | resolve problem with occupancy refinement | yes | yes | yes | yes |
| imosflm | 7.1.2, bug fixes | yes | yes | yes | yes |
| mosflm | 7.1.2, bug fixes | yes | yes | yes | yes |
| pisa/qtpisa | fix bug in calculation of symmetry IDs for assembled monomers | yes | yes | yes | yes |
| Molrep | improve multi-copy search | yes | yes | yes | yes |
| pointless | 1.9.25, bug fixes | yes | yes | yes | yes |
| aimless | 0.5.2, bug fixes | yes | yes | yes | yes |
| feckless | 0.0.5, bug fixes | yes | yes | yes | yes |
| ctruncate | 1.16.9, catch 0 sigma | yes | yes | yes | yes |
| ccp4i | rename mrshelxe to shelxe4mr | yes | yes | yes | yes |
| sfcheck | bug fixes | yes | yes | yes | yes |
| monomers | corrections and new monomers | yes | yes | yes | yes |
| ccp4-base | fixed setup scripts for MANPATH | yes | yes | yes | - |
Update ID: 6.5.004
Date: 23.02.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| pointless | 1,9.27, update polarization correction for XDS INTEGRATE with vertical spindle | yes | yes | yes | yes |
| aimless | 0.5.4, Fix bug in save/restore for factor off | yes | yes | yes | yes |
| bug fix for Scalepack file if one of I+ or I- are missing | yes | yes | yes | yes | |
| refmac | fix for bug in hydrogen generation | yes | yes | yes | yes |
| updater | addition of offline mode | yes | yes | yes | yes |
Update ID: 6.5.005
Date: 10.03.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| ccp4srs | updated dictionary | yes | yes | yes | yes |
| ccp4mg | 2.10.4, various bug fixes | yes | yes | yes | yes |
| ccp4i | fix for shelxe4mr name change issues | yes | yes | yes | yes |
| libg-related updates to the refmac gui | yes | yes | yes | yes |
Update ID: 6.5.006
Date: 14.03.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| ccp4-progs | areaimol - bug fixes | yes | yes | yes | yes |
| r500 - update | yes | yes | yes | yes | |
| standard_geometry.cif - update | yes | yes | yes | yes | |
| imosflm | update to 7.1.3 | yes | yes | yes | yes |
| mosflm | update to 7.1.3 | yes | yes | yes | yes |
| Molrep | fix for bug in multi-copy search | yes | yes | yes | yes |
| aimless | 0.5.7, bug fixes | yes | yes | yes | yes |
| privateer | extended support for disaccharides | yes | yes | yes | yes |
| adds support for external validation strings | yes | yes | yes | yes | |
| prosmart | minor update to h-bond restaint generation | yes | yes | yes | yes |
| mmdb2 | update to rwbrook interface | yes | yes | yes | yes |
| ccp4i | updated autoSHARP interface | yes | yes | yes | yes |
Update ID: 6.5.007
Date: 02.04.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| rwcontents | support for strict NCS records, via pdb header | yes | yes | yes | yes |
| blend | update to 0.6.3 | yes | yes | yes | yes |
| ccp4mg | addition of pdbview | yes | yes | yes | - |
| pointless | Bug fixes | yes | yes | yes | yes |
| update to 1.9.29 | yes | yes | yes | yes | |
| prelyscar | Bug fixes, documentation fixes | yes | yes | yes | yes |
| imosflm | fix for issue with 0 oscillation angle | yes | yes | yes | yes |
| acedrg | Update | yes | yes | yes | yes |
| atoms_electron.lib | Electron scattering terms for use in refmac (cyro-EM) | yes | yes | yes | yes |
Update ID: 6.5.008
Date: 16.04.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| ARP/wARP | 1. Solvent search run from ccp4i | yes | yes | yes | - |
| 2. The length of the file names in ligand search | yes | yes | yes | - | |
| 3. Selection of MTZ column labels for protein model building | yes | yes | yes | - | |
| Molrep | improve multi-copy search (nmr=4) | yes | yes | yes | yes |
| aimless | 0.5.8 | yes | yes | yes | yes |
| bug fix for case SCALES CONSTANT BROTATION with one run (not sensible anyway) | yes | yes | yes | yes | |
| fixed bug when there are different resolution limits for different datasets | yes | yes | yes | yes | |
| ccp4i | updated autosharp interface | yes | yes | yes | yes |
| updated blend interface | yes | yes | yes | yes | |
| privateer | bug fixes | yes | yes | yes | yes |
| clipper | Fix bug reading anomalous data from cif file | yes | yes | yes | yes |
| imosflm | fix for atan issue | yes | yes | yes | yes |
| dimple | bug fixes | yes | yes | yes | yes |
| ccp4-progs | update seqwt | yes | yes | yes | yes |
| lsqkab, improve handling of nucleic acids and increased dimensions | yes | yes | yes | yes | |
| documentation | updates | yes | yes | yes | yes |
| acedrg | fall back values of bonds added | yes | yes | yes | yes |
| blend | update to 0.6.6 01/04/2015 | yes | yes | yes | yes |
| Added two columns in file "CLUSTERS.txt" which tell two datasets having current values of LCV and aLCV (module blend1.R). | yes | yes | yes | yes | |
| Fixed bug for mode "-g D". Now data sets at the bottom are printed correctly (module blend4.R). | yes | yes | yes | yes |
Update ID: 6.5.009
Date: 14.05.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| ARP/wARP | activation of postinstall script for use of standalone arp/warp | yes | yes | yes | - |
| crank2 | several bugfixes | yes | yes | yes | yes |
| jsrview | new javascript output | yes | yes | yes | yes |
Update ID: 6.5.010
Date: 21.05.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| refmac | various bug fixes and new program header2matr | yes | yes | yes | yes |
| prosmart | fixed issue with degenerate PDB files | yes | yes | yes | yes |
| pointless | 1.9.31, allow real-space reindex operators | yes | yes | yes | yes |
| aimless | 0.5.9 make ABSORPTION lmax work. Bug fix in RESTORE with TILES | yes | yes | yes | yes |
| ctruncate | fix for output column names issue | yes | yes | yes | yes |
| blend | 0.6.7, Fixed a bug responsible for the deletion of any file whose name includes reference | yes | yes | yes | yes |
| libg | dps for stacking planes of DNA/RNA | yes | yes | yes | yes |
| examples | corrections python.exam, pyrogen.exam and gere.seq | yes | yes | yes | yes |
| documentation | update aimless and pointless documentation | yes | yes | yes | yes |
Update ID: 6.5.011
Date: 10.06.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| ARP/wARP | 1. Fixed rare problem with handling space group p22121 | yes | yes | yes | - |
| 2. Improved input to Refmac for application of solvent mask | yes | yes | yes | - | |
| mmdb2 | Corrected Link record in PDB header (incl. mmCIF i/o) | yes | yes | yes | yes |
| Blend | update to 0.6.8 | yes | yes | yes | yes |
| Fixed a "nasty" (and wrong piece of code!) bug in routine okRadDam that would make data sets with less than 6 images still undergo radiation damage routine (module blend1.R). | yes | yes | yes | yes | |
| Ample | update to 1.0.0, gives windows support | yes | yes | yes | yes |
| MrBUMP | Mainly improvements to support update to AMPLE and for new GUI2 interface | yes | yes | yes | yes |
| ccp4i | updated ample interface | yes | yes | yes | yes |
| theseus | update to 3.3.0 | yes | yes | yes | yes |
Update ID: 6.5.012
Date: 29.06.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| jsrview | Enhanced output | yes | yes | yes | yes |
| acedrg | Major update | yes | yes | yes | yes |
| RDkit used for serveral tasks | yes | yes | yes | yes | |
| protonation/deprotonation on serveral functional groups controlled by pH/pKa | yes | yes | yes | yes | |
| updates to internal bond/angle tables | yes | yes | yes | yes | |
| pisa | fix for pdb download issue | yes | yes | yes | yes |
| dimple | Bug fixes | yes | yes | yes | yes |
| sfcheck | fix for output mtzfile for non-standard settings | yes | yes | yes | yes |
| refmac5 | fix for memory leak in SIRAS routines | yes | yes | yes | yes |
| libg | fix related to PDB files with insertion codes | yes | yes | yes | yes |
| imosflm/mosflm | update to 7.2.0 | yes | yes | yes | yes |
Update ID: 6.5.013
Date: 03.07.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| ccp4-progs | seqwt: sequence line length set to 1000 | yes | yes | yes | yes |
| zanuda: update | yes | yes | yes | yes | |
| clipper | Correction to setting of NaN on some systems | yes | yes | yes | yes |
| Fixes cbuccaneer crash on windows | - | - | - | yes | |
| monomers | various corrections | yes | yes | yes | yes |
| pointless | update to 1.9.33 | yes | yes | yes | yes |
| aimless | update to 0.5.12 | yes | yes | yes | yes |
| ccpi | update to aimless task | yes | yes | yes | yes |
| imosflm | fix for issue with parallel processing in 7.2.0 | yes | yes | yes | yes |
| documentation | various updates | yes | yes | yes | yes |
Update ID: 6.5.014
Date: 03.08.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| molrep | correction to CC in TF calculation | yes | yes | yes | yes |
| blend | 0.6.10, aLCV has priority over LCV | yes | yes | yes | yes |
| pointless | 1.10.5, imporved resolution estimate for point-group estimation | yes | yes | yes | yes |
| acedrg | make sure formal changes are consistent with input files when atoms are not in functional groups | yes | yes | yes | yes |
| correct name convention for H atoms | yes | yes | yes | yes | |
| gesamt | 1.02, includes multiple alignment | yes | yes | yes | yes |
| Bug fixes | yes | yes | yes | yes | |
| ccp4-progs | freerflag, update random seed to ensure uniform distribution | yes | yes | yes | yes |
| documentation | update gesamt and freerflag | yes | yes | yes | yes |
Update ID: 6.5.015
Date: 12.08.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| refmac5 | bug fix: issue with "smooth_gauss" | yes | yes | yes | yes |
| bug fix: several problems with links | yes | yes | yes | yes | |
| enhancement: Mott-Bethe form factos for electron diffraction | yes | yes | yes | yes | |
| acedrg | bug fix: bond generalisation | yes | yes | yes | - |
| bug fix: residue name pass between dictionary files and coordinate files | yes | yes | yes | - | |
| remove as none functioning | - | - | - | yes | |
| libg | bug fix: format of extra stacked planes in extra restraints file | yes | yes | yes | yes |
| pointless | update: 1.10.7 | yes | yes | yes | yes |
| enhancement: allow spacegroup without reindex if appropriate | yes | yes | yes | yes | |
| aimless | update: 0.5.14 | yes | yes | yes | yes |
| bug fix: in Rmerge(batch) | yes | yes | yes | yes | |
| mrbump | update: to mrbump pdb sequence database | yes | yes | yes | yes |
| dimple | bug fix: various | yes | yes | yes | yes |
| blend | update: 0.6.12 | yes | yes | yes | yes |
Update ID: 6.5.016
Date: 03.09.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| pointless | update: 1.10.10 | yes | yes | yes | yes |
| bug fix: fix for LAUEGROUP HKLIN needed by xia2 | yes | yes | yes | yes | |
| bug fix: Close XDS files to allow for a large number | yes | yes | yes | yes | |
| bug fix: correct xml output format issues | yes | yes | yes | yes | |
| aimless | update: 0.5.15 | yes | yes | yes | yes |
| bug fix: fix to run pair correlations | yes | yes | yes | yes | |
| ccp4i | update: ample interface, add ideal helices | yes | yes | yes | yes |
| qtrview | bug fix: Corrections for handling improper HTML markups in log files | yes | yes | yes | yes |
| viewhkl | update: 1.09 | yes | yes | yes | yes |
Update ID: 6.5.017
Date: 24.09.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| coot | update: 0.8.2 | yes | yes | yes | - |
| ccp4mg | update: 2.10.5 | yes | yes | yes | yes |
Update ID: 6.5.018
Date: 17.10.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| ccp4i | fix for the new command line option -o in gesamt interface | yes | yes | yes | yes |
| qtrview | fix for symmetry operations table in aimless log file | yes | yes | yes | yes |
| imosflm | ipmosflm v.7.2.1 and corresponding changes in imosflm | yes | yes | yes | yes |
Update ID: 6.5.019
Date: 27.10.15
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| refmac | Bug fix: fix for issue causing rigid body refinement to fail at low resolution. | yes | yes | yes | yes |
| monomer library | Bug fix: various corrections. | yes | yes | yes | yes |
| pointless | Update: version 1.10.13 | yes | yes | yes | yes |
| Bug fix: Flag XDS MISFITS correctly. | yes | yes | yes | yes | |
| Bug fix: fixes for merged mtz input. | yes | yes | yes | yes | |
| aimless | Update: version 0.5.17 | yes | yes | yes | yes |
| Bug fix: fix in reported errors and warnings | yes | yes | yes | yes | |
| Feature: option to accept XDS misfits | yes | yes | yes | yes | |
| freerflag | Update: version 2.1 | yes | yes | yes | yes |
Update ID: 6.5.020
Date: 07.01.16
| Component | Description | Mac OS X 64-bit | Linux 32-bit | Linux 64-bit | Windows |
|---|---|---|---|---|---|
| CCP4-6.5 | End of release series | yes | yes | yes | - |
All bugs should be reported to ccp4@stfc.ac.uk.