ó
©%�Tc           @   sÒ  e  Z e Z e Z e Z e Z	 e
 Z e Z e Z e Z e Z e Z e Z e Z e Z e Z e Z e Z  e! Z" e# Z$ e% Z& e' Z( e) Z* e+ Z, e- Z. e/ Z0 e1 Z2 e3 Z4 e5 Z6 e7 Z8 e9 Z: e; Z< e= Z> e? Z@ eA ZB eC ZD eE ZF eG ZH eC ZD eI ZJ eK ZL eM ZN eO ZP eQ ZR eS ZT eU ZV eW ZX eY ZZ e[ Z\ e] Z^ e_ Z` ea Zb ec Zd ee Zf eg Zh ei Zj ek Zl em Zn eo Zp eq Zr es Zt eu Zv ew Zx ey Zz e{ Z| e} Z~ e Z€ e� Z‚ eƒ Z„ e… Z† e‡ Zˆ e‰ ZŠ e‹ ZŒ e� ZŽ e� Z� e‘ Z’ e“ Z” e• Z– e— Z˜ e™ Zš e› Zœ e� Zž eŸ Z  e¡ Z¢ e£ Z¤ e¥ Z¦ e§ Z¨ e¥ Z© eª Z« e¬ Z­ e® Z¯ e° Z± e² Z³ e´ Zµ e¶ Z· e¸ Z¹ eº Z» e¼ Z½ e¾ Z¿ eÀ ZÁ eÂ ZÃ eÄ ZÅ eÆ ZÇ eÈ ZÉ eÊ ZË eÌ ZÍ eÎ ZÏ eÐ ZÑ eÒ ZÓ eÔ ZÕ eÖ Z× eØ ZÙ eÚ ZÛ eÜ ZÝ eÞ Zß eà Zá eâ Zã eä Zå eæ Zç eè Zé eê Zë eì Zí eî Zï eð Zñ eò Zó eô Zõ eö Z÷ eø Zù eú Zû eü Zý eþ Zÿ e ZeZeZeZeZ	e
ZeZeZeZeZeZeZeZeZeZeZe Z!e"Z#e$Z%e&Z'e(Z)e*Z+eZe,Z-e.Z/y e0Z1e2Z3Wn n Xe4Z5e6Z7e8Z9d  S(   N(:  t   chain_id_pyt   chain_idt
   remarks_pyt   remarkst   residue_centre_pyt   residue_centret   coot_sys_build_type_pyt   coot_sys_build_typet   run_clear_backups_pyt   run_clear_backupst   het_group_residues_pyt   het_group_residuest   test_internal_pyt   test_internalt   test_internal_single_pyt   test_internal_singlet   get_map_colour_pyt   get_map_colourt   average_map_pyt   average_mapt   refmac_parameters_pyt   refmac_parameterst   map_sigma_pyt	   map_sigmat   map_parameters_pyt   map_parameterst   cell_pyt   cellt   map_cellt   get_refmac_sad_atom_info_pyt   get_refmac_sad_atom_infot   origin_pre_shift_pyt   origin_pre_shiftt   save_state_file_pyt   save_state_filet   save_state_file_name_pyt   save_state_file_namet   run_state_file_pyt   run_state_filet'   wrapped_create_run_state_file_dialog_pyt$   wrapped_create_run_state_file_dialogt   centre_of_mass_string_pyt   centre_of_mass_stringt   set_atom_attributes_pyt   set_atom_attributest   symmetry_operators_pyt   symmetry_operatorst   symmetry_operators_to_xHM_pyt   symmetry_operators_to_xHMt   merge_molecules_pyt   merge_moleculest   alignment_results_pyt   alignment_resultst   nearest_residue_by_sequence_pyt   nearest_residue_by_sequencet   refine_residues_pyt   refine_residuest/   copy_residue_range_from_ncs_master_to_chains_pyt,   copy_residue_range_from_ncs_master_to_chainst!   copy_from_ncs_master_to_chains_pyt   copy_from_ncs_master_to_chainst*   matching_compound_names_from_dictionary_pyt'   matching_compound_names_from_dictionaryt   comp_id_to_name_pyt   comp_id2namet    refine_residues_with_alt_conf_pyt   refine_residues_with_alt_conft   refine_zone_with_score_pyt   refine_zone_with_scoret   regularize_residues_pyt   regularize_residuest$   regularize_residues_with_alt_conf_pyt!   regularize_residues_with_alt_conft   regularize_zone_with_score_pyt   regularize_zone_with_scoret   change_chain_id_with_result_pyt   change_chain_id_with_resultt   non_standard_residue_names_pyt   non_standard_residue_namest%   chain_id_for_shelxl_residue_number_pyt"   chain_id_for_shelxl_residue_numbert   gln_asn_b_factor_outliers_pyt   gln_asn_b_factor_outlierst   map_peaks_pyt	   map_peakst   map_peaks_near_point_pyt   map_peaks_near_pointt   view_name_pyt	   view_namet   view_description_pyt   view_descriptiont   go_to_view_pyt
   go_to_viewt   movie_file_name_prefix_pyt   movie_file_name_prefixt   execute_ligand_search_pyt   execute_ligand_searcht   overlap_ligands_pyt   overlap_ligandst   analyse_ligand_differences_pyt   analyse_ligand_differencest!   additional_representation_info_pyt   additional_representation_infot&   rigid_body_refine_by_residue_ranges_pyt#   rigid_body_refine_by_residue_rangest   find_terminal_residue_type_pyt   find_terminal_residue_typet   cis_peptides_pyt   cis_peptidest   get_rotamer_name_pyt   get_rotamer_namet   missing_atom_info_pyt   missing_atom_infot   rotamer_graphs_pyt   rotamer_graphst   add_alt_conf_pyt   add_alt_conft   highly_coordinated_waters_pyt   highly_coordinated_waterst   add_lsq_atom_pair_pyt   add_lsq_atom_pairt   apply_lsq_matches_pyt   apply_lsq_matchest   get_lsq_matrix_pyt   get_lsq_matrixt   make_image_raster3d_pyt   make_image_raster3dt   make_image_povray_pyt   make_image_povrayt   raster_screen_shot_pyt   raster_screen_shott   ncs_master_chains_pyt   ncs_master_chainst   ncs_chain_differences_pyt   ncs_chain_differencest   ncs_chain_ids_pyt   ncs_chain_idst   ncs_ghosts_pyt
   ncs_ghostst   pucker_info_pyt   pucker_infot   sequence_info_pyt   sequence_infot   alignment_mismatches_pyt   alignment_mismatchest   do_clipped_surface_pyt   do_clipped_surfacet   generic_object_name_pyt   generic_object_namet   user_mods_pyt	   user_modst   probe_available_p_pyt   probe_available_pt   drag_intermediate_atom_pyt   drag_intermediate_atomt   mark_atom_as_fixed_pyt   mark_atom_as_fixedt   mark_multiple_atoms_as_fixed_pyt   mark_multiple_atoms_as_fixedt   ccp4i_projects_pyt   ccp4i_projectst   add_dipole_pyt
   add_dipolet   add_dipole_for_residues_pyt   add_dipole_for_residuest   get_pkgdatadir_pyt   get_pkgdatadirt   handle_pisa_interfaces_pyt   handle_pisa_interfacest
   pkgdatadirt%   matching_compound_names_from_sbase_pyt"   matching_compound_names_from_sbaset   add_linked_residue_pyt   add_linked_residuet   all_molecule_rotamer_score_pyt   all_molecule_rotamer_scoret"   all_molecule_ramachandran_score_pyt   all_molecule_ramachandran_scoret#   all_molecule_ramachandran_region_pyt    all_molecule_ramachandran_regiont   user_defined_click_pyt   user_defined_clickt   get_torsion_pyt   get_torsiont   set_torsion_pyt   set_torsiont   multi_residue_torsion_pyt   multi_residue_torsiont   multi_residue_torsion_fit_pyt   multi_residue_torsion_fitt   test_function_pyt   test_functiont   display_maps_pyt   display_mapst   space_group_pyt   space_groupt   molecule_name_stub_pyt   molecule_name_stubt   make_atom_spec_pyt   make_atom_spect   goto_next_atom_maybe_pyt   goto_next_atom_maybet   goto_prev_atom_maybe_pyt   goto_prev_atom_maybet   set_go_to_atom_from_res_spec_pyt   set_go_to_atom_from_res_spect   get_symmetry_pyt   get_symmetryt   map_colour_components_pyt   map_colour_componentst   dictionaries_read_pyt   dictionaries_readt   cif_file_for_comp_id_pyt   cif_file_for_comp_idt   dictionary_entries_pyt   dictionary_entriest   SMILES_for_comp_id_pyt   SMILES_for_comp_idt   monomer_restraints_pyt   monomer_restraintst   set_monomer_restraints_pyt   set_monomer_restraintst   list_nomenclature_errors_pyt   list_nomenclature_errorst   atom_info_string_pyt   atom_info_stringt   residue_info_pyt   residue_infot   residue_name_pyt   residue_namet   clear_and_update_molecule_pyt   clear_and_update_moleculet   add_molecule_pyt   add_moleculet   active_residue_pyt   active_residuet   closest_atom_pyt   closest_atomt   residues_near_residue_pyt   residues_near_residuet   residues_near_position_pyt   residues_near_positiont%   refine_zone_with_full_residue_spec_pyt"   refine_zone_with_full_residue_spect   list_extra_restraints_pyt   list_extra_restraintst   delete_extra_restraint_pyt   delete_extra_restraintt   water_chain_from_shelx_ins_pyt   water_chain_from_shelx_inst   water_chain_pyt   water_chaint   make_variance_map_pyt   make_variance_mapt   spin_search_pyt   spin_searcht   cootaneer_pyt	   cootaneert)   generic_string_vector_to_list_internal_pyt&   generic_string_vector_to_list_internalt)   generic_list_to_string_vector_internal_pyt&   generic_list_to_string_vector_internalt&   generic_int_vector_to_list_internal_pyt#   generic_int_vector_to_list_internalt   inverse_rtop_pyt   inverse_rtopt   protein_db_loops_pyt   protein_db_loopst   make_link_pyt	   make_linkt   link_info_pyt	   link_infot   map_to_model_correlation_pyt   map_to_model_correlationt'   map_to_model_correlation_per_residue_pyt$   map_to_model_correlation_per_residuet   align_to_closest_chain_pyt   align_to_closest_chaint   key_sym_code_pyt   key_sym_codet   screen_vectors_pyt   screen_vectorst   get_residue_by_type_pyt   get_residue_by_typet   score_rotamers_pyt   score_rotamerst   residues_torsions_match_pyt   residues_torsions_matcht   kolmogorov_smirnov_pyt   kolmogorov_smirnovt   kullback_liebler_pyt   kullback_lieblert   chain_fragments_pyt   chain_fragmentst   find_blobs_pyt
   find_blobst   morph_fit_residues_pyt   morph_fit_residuest   density_score_residue_pyt   density_score_residuet   active_atom_spec_pyt   active_atom_spect   probe_clash_score_pyt   probe_clash_scoret   coot_get_url_as_string_pyt   coot_get_url_as_stringt   curl_progress_info_pyt   curl_progress_infot   fill_partial_residuest   de_chainsawt   set_find_hydrogen_torsionst   set_find_hydrogen_torsiont$   toggle_flev_idle_ligand_interactionst   toggle_idle_ligand_interactions(    (    (    sY   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/redefine_functions.pyt   <module>   sD  
