%Tc@srdZddlmZmZmZmZmZmZdZdZ dZ dd dYZ dd Z d Z d S( sVThe BuildInitSugar class for building sugar coordinates given base and C1' coordinatesi(tplustminusttorsiont rotateAtomst crossProdt magnitudeijiFitBuildInitSugarcBs eZdZdZdZRS(sMGiven base and C1' coordinates, build a ribose sugar in an anti configurationcCs||_||_t||_t||_x[|j|jfD]G}|d}|d=x-|jD]\}}t||||(t__name__t __module__t__doc__RR*(((s\/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/buildInitSugar.pyRs tsyncCs|dkrt}n|dkr*t}ntg|jD]%\}}|t||df^q:}|jdrd}nd}t|||d}t|||t|d}|S(sGiven a sugar in anti configuration, rotate it to a new configuration (such as syn or high-anti). ARGUMENTS: antiSugarCoords - a dictionary containing a sugar in anti configuration in the format atomName: [x, y, z] typically, this dictionary is generated by a BuildInitSugar object atoms - a dictionary containing base coordinates in the format atomName: [x, y, z] OPTIONAL ARGUMENTS: newChi - the chi value to rotate the sugar to may be "syn", "high-anti", or a number (in degrees) defaults to "syn" RETURNS: synSugarCoords - a dictionary containing a sugar in syn configuration in the format atomName: [x, y, z] R.s high-antisC1'RR(tSYN_CHIt HIGH_ANTI_CHIRR RRRR(tantiSugarCoordstatomstnewChiR(R)tsynSugarCoordstbaseNR$((s\/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/buildInitSugar.pyt rotateSugaros    > cCst|d}i}x|D]}|dd!jdkr|dd!j}t|dd!}t|d d !}t|d d !}|jd d|||f||s.W #