ó
o™xTc           @   sW   d  d l  m Z d  d l m Z d  d l Z d e d „ Z d d „ Z d d „ Z	 d S(	   iÿÿÿÿ(   t   division(   t   flexNi    c         C   sz  | | k s t  ‚ t j g  t |  | d ƒ D]- } g  t | d ƒ D] } | | ^ qD ^ q- ƒ } t j | d d ƒ } d | | <| j | ƒ }	 |	 j ƒ  }
 |	 j d |
 d | ƒ } t j |  | d d ƒ } x£ t t |  | d ƒ ƒ D]‡ \ } } t j	 j
 g  t | d ƒ D] } | | ^ qƒ j t j	 j | ƒ ƒ } |  | d } | rh| | | | | <që | | | <që W| S(   s  
    Compute the convolution coefficients to be used for smoothing data by the
    method of Savitzky and Golay [1].
    Parameters
    ----------
    n_left and n_right are the number of past and future data points used. The
    total number of data points used is n_left + n_right + 1.
    degree is the degree or order of the smoothing polynomial.
    wraparound: if True then the coefficients are returned in "wraparound" order
    i.e. point 0 is at index[0], 1 at index[1], etc. and point -1 is at index[-1],
    point -2 at index[-2], etc.
    Notes
    -----
    See also:
    http://www.scipy.org/Cookbook/SavitzkyGolay
    References
    ----------
    .. [1] A. Savitzky, M. J. E. Golay, Smoothing and Differentiation of
       Data by Simplified Least Squares Procedures. Analytical
       Chemistry, 1964, 36 (8), pp 1627-1639.
    .. [2] Numerical Recipes 3rd Edition: The Art of Scientific Computing
       W.H. Press, S.A. Teukolsky, W.T. Vetterling, B.P. Flannery
       Cambridge University Press ISBN-13: 9780521880688
    i   i    t   pivot_indicest   b(   t   AssertionErrorR   t   doublet   ranget   matrix_transpose_multiplyt    matrix_lu_decomposition_in_placet   matrix_lu_back_substitutiont	   enumeratet   scitbxt   matrixt   colt   dott   row(   t   n_leftt   n_rightt   degreet
   derivativet
   wraparoundt   kt   it   aR   t   luR   t   xt   coefficientst   nt   ct   np(    (    s>   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/scitbx/smoothing.pyt   savitzky_golay_coefficients   s     Q
'3c         C   s£   | d | d !j  ƒ  } | | d d !j  ƒ  } | j | ƒ | j | ƒ | } t | | | d | d t ƒ} |  t | | ƒ | | !}  } | | | !} |  | f S(   Ni   iÿÿÿÿR   R   (   t   reversedt   extendR   t   Falset   convolve(   R   t   yt   half_windowR   R   t	   firstvalst   lastvalst   coeffs(    (    s>   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/scitbx/smoothing.pyt   savitzky_golay_filter3   s    t   fullc         C   su  | d k s t  ‚ t |  ƒ t | ƒ t |  ƒ t | ƒ d } } } g  } x‹ t | ƒ D]} } d t d | | d ƒ t | d | ƒ } }	 }
 x5 t |	 |
 d ƒ D]  } | |  | | | | } q¥ W| j | ƒ qY Wt j | ƒ } | d k rt j | ƒ S| d k rO| | d } | | d d k r<| | | !S| | | d !Sn" | d k rq| | } | | | !Sd  S(   NR)   t   samet   validi   i    i   (   R)   R*   R+   (   R   t   lenR   t   maxt   mint   appendR   R   (   R   R#   t   modet   Pt   Qt   Nt   zR   t   tt   lowert   upperR   t   padding(    (    s>   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/scitbx/smoothing.pyR"   C   s&    42
(
   t
   __future__R    t   scitbx.array_familyR   t   scitbx.matrixR   t   TrueR   R(   R"   (    (    (    s>   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/scitbx/smoothing.pyt   <module>   s
   -