ó šxTc @s4 dZddlZddlZddlZddlZddlZddlZddlZdae ej ƒa d„Z d„Z edkr0 t dkrµxej D] ZeGHq£WndGHe dƒZd Zd Zd Zd Zd Zd Zd Zd ZeZd Zd ZdZe d ƒjƒZed ksDed ksDedkr‚e e dƒƒZ!e e dƒƒZ"e e dƒƒZ#dGHe dƒZ$e$dkr¦e dƒZne dƒZe eƒdkrÓe dƒZne eƒdkrùdGHe dƒZnejj%dkrdZne dƒZe eƒdkrAe dƒZne eƒdkrgdGHe d ƒZne d!ƒZe d"ƒZned krÆd#GHe&e d$ƒƒj'ƒj(d%ƒdkrÆe)ZqÆned ksöed&ksöed ksöedkr+e d'ƒZe eƒdkr+d(GHe d)ƒZq+ned ksOed ksOedkrãe d*ƒZe eƒdkr|e d+ƒZne eƒdkr¢d,GHe d-ƒZne d.ƒZ*e d/ƒZe eƒdkrãd0GHe d1ƒZqãned&ksed ksedkr@e+e d2ƒƒZ,e+e d3ƒƒZ-e e d4ƒƒZ.ned ksped&ksped kspedkr‹d5eeeeefGHne d6ƒZdgZ/ej0eeeeeeeeeeee/ƒ Z1edkrèee1_2ned&ks ed ks edkr!e.e1_.e-e1_-ned7krued&krue d8ƒZ3e3j'ƒj(d%ƒdkrue d9ƒe1_4quned ks¥ed&ks¥ed ks¥edkrÛe d:ƒZ3e3j'ƒj(d%ƒdkrÛe)e1_5qÛned ksÿed ksÿedkr5e d;ƒZ3e3j'ƒj(d%ƒdkr5e)e1_6q5nyFd<ej7ej8ejƒƒƒe1_9ed ksuedkr—e1j:e!e"e#e e*ƒeƒned&kr³e1j;e,ƒned kráe1j<e!e"e#e,e e*ƒƒned7ksùed=kr<d Z=eZ>ed7kr e d>ƒZ?ned=krAe d?ƒZ?e)Z>ne d@ƒZ3e3j'ƒj(d%ƒdkrwe dAƒZ=nd d ggZ@e dBƒZ3e3j'ƒj(d%ƒdkr#e+e dCƒƒZAeAdkr#xReBeAƒD]AZCe dDeCdƒZDe dEeCdƒZEe@jFeDeEgƒqØWq#ne1jGe?e=e>e@ƒne1jHjIejJdFej7ej8ejƒƒƒdGe/dƒWn¡eKk r ZLe/dcd7Enter the fully qualified file path for the superpose program:s superpose: s8Enter the number of Phaser MR jobs to run concurrently: s<Enter maximum number of solutions for each MR calculation : s:Enter maximum duration of hours for each MR calculation : sCPaths for ssh, scp, phaser, clustalw, superpose are: %s %s %s %s %ss'Enter a name tag for the calculations: tds=Use a protocol other than default for sculpting models (y/n) s8Which protocol should be used for sculpting the models? saSeed multicomponent calculations on components a,b,c with refined template solution of a,b (y/n) s=Use intensities instead of amplitudes in the mtz file? (y/n) s Run started on tes=Enter the database file name that will hold all the results: sVEnter name of the empty database file that will only contain table and column layout: sQDo you supply a list of filenames and label names for PDB codes to label? (Y/N): syEnter filenames with PDB codes of special PDBs and a corresponding name to label each MR model matching those PDB codes: sCDo you have additional solution files with common prefixes? (Y/N): s How many? s3Enter database column suffix for the %d. solution: s,Enter filename prefix for the %d. solution: s Run finished on s with return value of %d s (Rt__doc__t BLASTnMRfuncRt tracebackRtloggingRttimeRRRRRRt__name__targtanswertsshexetscpexetuseridt mtzfoldert phaserexet clustalwexet superposeexetpasswdtFalsetnoRNPt targetpdbidt calclabeltNonet winoptsshtuppertfloattmaxseqidtminseqidtmaxpdbst usepasswdRtstrtlowertfindRtmyinctinttnjobstnmaxsolst fmaxhourst errorcodet BLASTrunnertmyobjt writeBLASTxmltstsculptprotocoltbusecurrenttmpltbuseIntensitiestasctimet localtimetpretexttBLASTnSetupMRrunstRunMRautoFromlistFilet BLASTnMRruntTaggedPDBfileliststrt OnlyDBLayouttDBfnamet othersolstNtrangetitsuffixtsolnametappendt CollateMRautoResultsFromlistFiletloggertlogtINFOt ExceptiontmtERRORt format_excthandlerstclosetexit(((s@/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/BLASTrunner.pyts             $       ' 0 $   $0     $   0 $ %"  "       7