ó
£™xTc           @   sÄ   d  d l  m Z d  d l m Z d  d l m Z d  d l m Z d  d l m Z d  d l m	 Z	 d  d l m
 Z
 d  d l Z d	 e f d
 „  ƒ  YZ d e f d „  ƒ  YZ d d e e j d „ Z d S(   iÿÿÿÿ(   t   division(   t   ramalyze(   t   rotalyze(   t+   slots_getstate_setstate_default_initializer(   t   null_out(   t   easy_mp(   t   AutoNt   ensemble_validationc           B   sG   e  Z d e e j d  „ Z d „  Z e j d d „ Z d d d „ Z	 RS(   c         C   s  | |  _  g  | D] } | j ƒ  ^ q |  _ | d  k rG |  j  d } n  g  |  _ i  |  _ x… | j ƒ  j ƒ  D]q } | j ƒ  s„ ql n  xV | j	 ƒ  D]H } | j
 ƒ  } | j ƒ  }	 |  j j |	 ƒ t |  j ƒ d |  j |	 <q‘ Wql Wg  |  j D] }	 t g  ƒ ^ që |  _ x¤ | D]œ }
 x“ |
 j ƒ  j ƒ  D] } | j ƒ  s>q&n  xd | j	 ƒ  D]V } | j
 ƒ  } | j ƒ  }	 |  j j |	 ƒ } | d  k	 s�t ‚ |  j | j | ƒ qKWq&WqWt j d |  j d t t | ƒ ƒ d | ƒ |  _ t d g  |  j D] \ } } | ^ qíd t j d |  j d	 t d
 | ƒ } t d g  |  j D] \ } } | ^ q6d t j d |  j d	 t d
 | ƒ } t | ƒ t | ƒ k o›t |  j ƒ k n s¦t ‚ g  |  _ x] t |  j ƒ D]L \ } }	 |  j | } |  j j t d |	 d | d | | d | | ƒ ƒ q¿Wd  S(   Ni    i   t
   fixed_funct   iterablet	   processest   validation_objectst   ensemble_result_classt   residue_idst   ignore_unexpected_residuest   logt   id_strt   residuest   ramat   rota(    t   pdb_hierarchiest   atom_selection_cachet   selection_cachest   NoneR   t   residue_id_dictt
   only_modelt   chainst
   is_proteint   residue_groupst   only_atom_groupR   t   appendt   lent   listt   residue_ensemblest   gett   AssertionErrorR   t   pool_mapt   validate_single_modelt   ranget   validationst    combine_model_validation_resultsR   t   ramachandran_ensemblet   FalseR   t   rotamer_ensemblet   residue_datat	   enumeratet   residue_analysis(   t   selfR   t   reference_hierarchyt   nprocR   t   ht   chaint   residue_groupt   residueR   t	   hierarchyt   i_resR   R   t   rama_by_residuet   rota_by_residueR   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyt   __init__   sf    	"		"% 		"			"			7		
c         C   sG   |  j  | } t j d | d t ƒ } t j d | d t ƒ } | | f S(   Nt   pdb_hierarchyt   outliers_only(   R   R   R*   R   (   R/   t   i_modelR6   t   rama_validationt   rota_validation(    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyR%   G   s    				t    c         C   s.   x' |  j  D] } | j d | d | ƒ q
 Wd  S(   Nt   outt   prefix(   R,   t   show(   R/   RA   RB   R5   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyRC   Q   s    c         C   s›  | d  k r t ƒ  } n  g  } d } xp| t |  j ƒ k  r–|  j | } |  j | } |  j | \ } }	 | d 7} | j | ƒ j ƒ  }
 | j |
 ƒ } | j	 ƒ  j
 ƒ  j ƒ  } | d  k	 rã t | ƒ | k rã | j d  ƒ q' qã n  t } x„ | D]| } | j ƒ  } | j d | ƒ } |	 j d | ƒ } d  | | g k sJt | j ƒ  ƒ ‚ | j ƒ  sb| j ƒ  rð t } Pqð qð W| r†| j d  ƒ q' | j | ƒ q' W| S(   Ni    i   t   other(   R   R   R   R   R   R'   t	   selectiont
   iselectiont   selectR   t
   only_chainR   R   R*   R   t   find_atom_groupR#   R   t
   is_outliert   True(   R/   RE   t   require_n_residuesR   t   resultsR=   R6   t	   sel_cacheR   R   t   iselt   hierarchy_selR   t   rejectR4   t
   atom_groupt   rama_resultt   rota_result(    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyt#   get_validated_residues_in_selectionU   s:     
	$N(
   t   __name__t
   __module__R   R   t   syst   stdoutR:   R%   RC   RU   (    (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyR      s   5	
R.   c           B   s,   e  Z d  d d d g Z e j d d „ Z RS(   R   R   R   R   R@   c         C   s-   |  j  d  k	 r) | | |  j  j ƒ  IJn  d  S(   N(   R   R   t	   as_string(   R/   RA   RB   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyRC   y   s    (   RV   RW   t	   __slots__RX   RY   RC   (    (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyR.   w   s   c         C   sš  d „  } | d  k r | } n t | d ƒ s3 t ‚ t | ƒ d  k r‚ g  } x4 |  d j D]" } | j | d | d d ƒ ƒ qY Wn  t g  | D] } | t g  ƒ f ^ qŒ ƒ }	 x� t |  ƒ D]‚ \ }
 } xs | j D]h } | d | d |
 ƒ } | |	 k r'd | } | r| d | IJq8t	 | ƒ ‚ qÐ |	 | j | ƒ qÐ Wqº Wg  } xM | D]E } |	 | } t | ƒ d k r| j d  ƒ qM| j | | ƒ ƒ qMW| S(   Nc         S   s
   |  j  ƒ  S(   N(   t   atom_group_id_str(   t   resultR=   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyt   default_get_key_callback„   s    t   __call__i    R]   R=   s7   The residue ID '%s' was not found in the expected list.s     (
   R   t   hasattrR#   R   RM   R   t   dictR    R-   t   RuntimeError(   R   R   R   t   get_key_callbackR   R   R^   R]   R   t   results_dictR=   t   validation_objectt   msgRM   t   rr(    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyR(   }   s2    		#+

(   t
   __future__R    t   mmtbx.validationR   R   t   libtbxR   t   libtbx.utilsR   R   R   RX   t   objectR   R.   R   RK   t   stderrR(   (    (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/ensembles.pyt   <module>   s   j	