ó
µ™xTc           @   s¯   d  d l  m Z d  d l m Z d  d l m Z d  d l Z d  d l Z d  d l Z	 d  d l
 m Z d  d l m Z d  d l Z d  d l Z d „  Z e d k r« e ƒ  n  d S(	   iÿÿÿÿ(   t   division(   t   tools(   t   monomer_libraryN(   t   approx_equal(   t   format_cpu_timesc          C   s  t  j j ƒ  }  t  j j ƒ  } t j j d d d t j j ƒ } t  j	 j
 d |  d | d | d d  d t ƒ } | j ƒ  } g  } x0 d	 d
 g D]" } | j | j j d | ƒ ƒ q‹ Wt j j j d | j j j d d ƒ d | j j d g  ƒ j } g  } xE | D]= }	 | j t j d |	 j d |	 j d |	 j d |	 j ƒ ƒ qý Wt j d | ƒ t j  d | j! ƒ  d | d | ƒ }
 d } xD t" |
 | j j# ƒ D]- \ } } | j$ } t% | | d ƒ sŽt& ‚ qŽWg  } x{ | D]s } | j t j d d d d d d d g d d d d d d d g d d d d d d d d d d g	 d | j ƒ ƒ qÌWt j' d | d | d | ƒ } d GHt j d | ƒ x• t" | | ƒ D]„ \ } } t% | j | j d ƒ s°t& ‚ t% | j | j d ƒ sÎt& ‚ t% | j | j d ƒ sìt& ‚ t% | j | j d ƒ s†t& ‚ q†Wt( ƒ  GHd  S(   Nt   relative_paths"   phenix_regression/pdb/1OC2_tst.pdbt   testt   mon_lib_srvt   ener_libt	   file_namet   raw_recordst   force_symmetrys   chain As   chain Bt   stringt   remark_3_recordst   iiii   t   pdb_hierarchyt	   chain_idst   tt   lt   st   origint   tlsost
   sites_cartt
   selectionsi    g-Cëâ6?g        t   xray_structuret   tlsos_initials   
TLS from Uaniso:
gü©ñÒMbP?()   R   t   serverR   t   libtbxt   envt   find_in_repositoriest   ost   patht   isfilet   pdb_interpretationt   processt   Nonet   TrueR   t   appendt   all_chain_proxiest	   selectiont   iotbxt   pdbt   remark_3_interpretationt   extract_tls_parameterst   pdb_inpt   extract_remark_iii_recordsR   t
   tls_paramsR   t   tlsoR   R   R   R   t   show_tlst   u_cart_from_tlsR   t   zipt	   pdb_atomst   uijR   t   AssertionErrort   tls_from_uanisosR   (   R   R   t   pdb_filet   processed_pdb_fileR   R   R   t   input_tls_dataR.   t   itemR1   t   it   utlst   atomt   updbR   t   input_tls_data_R6   t   tls_from_uanisos_(    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/tls/tst_tls.pyt   uaniso_from_tls_and_back   sn    								!	"t   __main__(   t
   __future__R    t	   mmtbx.tlsR   t   mmtbxR   t   mmtbx.monomer_library.servert(   mmtbx.monomer_library.pdb_interpretationt!   iotbx.pdb.remark_3_interpretationR(   t   libtbx.test_utilsR   t   libtbx.utilsR   t   libtbx.load_envR   R   RA   t   __name__(    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/tls/tst_tls.pyt   <module>   s   	C