ó
¬™xTc           @   sv   d  d l  m Z d  d l m Z d  d l Z d  d l m Z d  d l m Z d  d l m Z d e	 f d „  ƒ  YZ
 d S(	   iÿÿÿÿ(   t   division(   t   millerN(   t   absolute_scaling(   t   matthews(   t   data_statisticst
   pre_scalerc           B   s   e  Z d d  „ Z RS(   c         C   s  | j  ƒ  |  _ | |  _ | |  _ | J| d IJ| d IJ| J| d IJt j d |  j d |  j j d |  j j d | d d	 ƒ } | d
 } | d	 } | d } |  j j d  k r¿ | |  j _ n  |  j j d  k rà | |  j _ n  | J| d IJ| d IJ|  j j	 d  k r,|  j j
 d  k r,| d IJq,n  t d ƒ }	 |  j j	 d  k	 rs|  j j	 }	 | d t |  j j	 ƒ IJn  d
 }
 |  j j
 d  k	 r´|  j j
 }
 | d t |  j j
 ƒ IJn  | J| d IJ| d IJ| Jt j d |  j d |  j j d |  j j ƒ } | j d | ƒ | j |  j ƒ |  _ |  j j r|  j j } | d  k rOd } n  | J| d IJ| d IJ| Jt j d |  j d | |  j j ƒ  j ƒ  | d | |  j j ƒ  j ƒ  | ƒ } | j d | d d	 ƒ | J| d IJ| J| j } t j |  j | j | ƒ |  _ n  d  S(   Ns   Matthews analysess   -----------------sG   Inspired by: Kantardjieff and Rupp. Prot. Sci. 12(9): 1865-1871 (2003).t   crystal_symmetryt
   n_residuest   n_basest   outt   verbosei   i    i   s   Applying resolution cuts   -----------------------s   No resolution cut is madeg    €„.As%   Specified low resolution limit: %3.2fs&   Specified high resolution limit: %3.2fs(   Wilson statistics based outlier analysess(   ----------------------------------------t   miller_arrayt   prob_cut_ext   prob_cut_wilg        s$   Anisotropic absolute scaling of datas&   --------------------------------------s"     removing anisotropy for native  (   t	   deep_copyt   x1t   optionst
   basic_infoR   t   matthews_ruppR   R   t   Nonet   low_resolutiont   high_resolutiont   floatR   t   possible_outlierst   outlier_level_extremet   outlier_level_wilsont   showt   remove_outlierst   aniso_correctiont   b_addR   t   ml_aniso_absolute_scalingt   space_groupt   order_zt   u_start   anisotropic_correctiont   p_scale(   t   selfR   t   pre_scaling_protocolR   R	   t   matthews_analysesR   R   t   n_copies_solct   low_cutt   high_cutt   native_outliert   b_finalt   aniso_correctt   u_star_correct_nat(    (    sE   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/scaling/pre_scale.pyt   __init__
   sˆ    		


		






			

		 
	N(   t   __name__t
   __module__R   R.   (    (    (    sE   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/scaling/pre_scale.pyR   	   s   (   t
   __future__R    t   cctbxR   t   mmtbx.scalingt   mmtbxR   R   R   t   objectR   (    (    (    sE   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/scaling/pre_scale.pyt   <module>   s   