ó
ŚxTc           @   s|   d  d l  m Z d  d l Z d  d l m Z d  d l m Z d  d l m	 Z	 d e
 f d     YZ d e
 f d	     YZ d S(
   i˙˙˙˙(   t   divisionN(   t   flex(   t   ext(   t   approx_equalt   sampled_model_densityc           B   s)   e  Z d d d   Z d   Z d   Z RS(   c         C   sY  | | g j  d   d k s! t  | |  _ | d  k r | j   j   d  \ } } } t | |  t | |  t | |  } } }	 n  | d | d | d } } }	 t j | j	   d  }
 t
 j d | j   d | j   d | j   d | | |	 f d	 | | |	 f d
 |
 d d d d d t d t d d  |  _ t |  j j   d  sUt  d  S(   Ni   i   i    i   t	   unit_cellt
   scattererst   scattering_type_registryt
   fft_n_realt
   fft_m_realt   u_baset   wing_cutoffgÖ&č.>t   exp_table_one_over_step_sizeiü˙˙t   force_complext    sampled_density_must_be_positivet   tolerance_positive_definitegńhăľřä>g        (   t   countt   Nonet   AssertionErrort   xray_structureR   t
   parameterst   intR   t   min_defaultt   extract_u_iso_or_u_equivR   R   R   R   t   FalseR   t   u_extra(   t   selfR   t   n_realt	   grid_stept   a_cellt   b_cellt   c_cellt   nxt   nyt   nzR
   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/real_space/__init__.pyt   __init__	   s(    !	5 	c         C   s   |  j  j   S(   N(   R   t   real_map_unpadded(   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/real_space/__init__.pyt   data#   s    c         C   s   d d  l  } |  j   } | j j j d | j   d d d | j    } | j j j d | d t d d	 d
 g d |  j j	   d | d | d d d d  d  S(   Ni˙˙˙˙t   nt   firsti    t   lastt	   file_namet
   is_p1_cellt   title_liness    REMARKS FILENAME=""s	    REMARKS R   t   griddingR%   t   averaget   standard_deviation(   i    i    i    (
   t   iotbx.xplor.mapR%   t   xplort   mapR,   t   focust   writert   TrueR   R   (   R   R)   t   iotbxt	   model_mapR,   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/real_space/__init__.pyt   write_as_xplor_map&   s    	N(   t   __name__t
   __module__R   R#   R%   R7   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/real_space/__init__.pyR      s   	t   around_atomc           B   s#   e  Z d    Z d   Z d   Z RS(   c         C   s   d d l  m } | j d | d | d | d | d |  } | j   } | j   }	 t j |	  }
 | j |
  |  _ |	 j |
  |  _	 d  S(   Ni˙˙˙˙(   t   maptbxR   R%   t   radiust   shellt	   site_frac(
   t   cctbxR;   t/   grid_points_in_sphere_around_atom_and_distancest   data_at_grid_pointst	   distancesR   t   sort_permutationt   selectt   data_t   dist_(   R   R   t   map_dataR<   R=   R>   R;   t   objR%   t   distt   p(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/real_space/__init__.pyR#   8   s    		c         C   s   |  j  S(   N(   RE   (   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/real_space/__init__.pyR%   J   s    c         C   s   |  j  S(   N(   RF   (   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/real_space/__init__.pyRB   M   s    (   R8   R9   R#   R%   RB   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/real_space/__init__.pyR:   6   s   		(   t
   __future__R    t   cctbx.array_family.flexR?   t   scitbx.array_familyR   t
   cctbx.xrayR   t   libtbx.test_utilsR   t   objectR   R:   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/real_space/__init__.pyt   <module>   s   /