ó
Û™xTc           @   sv   d  d l  m Z d  d l m Z d  d l m Z d  d l Z d  d l m	 Z	 d  d l m
 Z
 d e f d „  ƒ  YZ d S(	   iÿÿÿÿ(   t   division(   t   adopt_init_args(   t   flexN(   t   maptbx(   t   millert%   from_map_and_xray_structure_or_fmodelc           B   s/   e  Z d d d d d  „ Z d d d d „ Z RS(   c   	      C   s6  | | g j  d ƒ d k s! t ‚ | | g j  d ƒ d k sB t ‚ | | g j  d ƒ d k sc t ‚ | | g j  d ƒ d k s„ t ‚ t |  t ƒ  ƒ |  j d k	 r-t j j d |  j ƒ j	 d d d t
 d t ƒ } |  j j ƒ  j d	 |  j j ƒ  j ƒ  d
 d ƒ } t j d | d | ƒ } | j ƒ  |  _ n  |  j d k	 ru|  j j ƒ  } t j d | d | ƒ } | j ƒ  |  _ n„ t j d |  j j ƒ  d |  j j ƒ  d |  j j ƒ  j ƒ  ƒ } |  j j d	 |  j ƒ j ƒ  } t j d | d | ƒ } | j ƒ  |  _ |  j d k	 r |  j j j ƒ  |  _ n |  j j ƒ  |  _ d S(   sÊ   
    Utility to calculate correlation between two maps:
      CC(xray_structure, map_data), xray_structure are map_data inputs
    or
      CC(2mFo-DFc, Fc), 2mFo-DFc and Fc are from input fmodel .
    i   i    i   t   fmodelt   map_types   2mFo-DFct
   isotropizet   fill_missingt   d_mint   resolution_factorg      ð?i   t   crystal_griddingt   fourier_coefficientst	   unit_cellt   space_group_infot   pre_determined_n_realN(   i    i   gUUUUUUÕ?(   t   countt   Nonet   AssertionErrorR   t   localsR   t   mmtbxt	   map_toolst   electron_density_mapt   map_coefficientst   Truet   Falset   f_obsR   R
   R   t   fft_mapt   real_map_unpaddedt   map_datat   f_model_scaled_with_k1t	   map_modelR   t   xray_structureR   R   t   accessort   allt   structure_factorst   f_calct
   sites_cart(	   t   selfR!   R   R   R
   t   mcR   R   t   f_model(    (    sD   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/maps/correlation.pyt   __init__
   sH    !!!!									g       @c            s™   | | g j  d  ƒ d k s! t ‚ ‡  ‡ f d †  } | d  k	 r| g  } x0 | D]( } | j | d ˆ j j | ƒ ƒ ƒ qL W| S| d ˆ j j | ƒ ƒ Sd  S(   Ni   c            s—   t  j d ˆ j j ƒ  d ˆ j j ƒ  d ˆ j j ƒ  d |  d t j |  j	 ƒ  ˆ  ƒ ƒ } t j
 d ˆ j j | ƒ j ƒ  d ˆ j j | ƒ j ƒ  ƒ j ƒ  S(   NR   t
   fft_n_realt
   fft_m_realR&   t
   site_radiit   xt   y(   R   t   grid_indices_around_sitesR!   R   R   t   focusR#   R   t   doublet   sizet   linear_correlationt   selectt   as_1dR    t   coefficient(   R&   t   sel(   t   atom_radiusR'   (    sD   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/maps/correlation.pyt   compute@   s    		R&   (   R   R   R   t   appendR&   R5   (   R'   t
   selectionst	   selectionR9   R:   t   resultt   s(    (   R9   R'   sD   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/maps/correlation.pyt   cc>   s    !
&N(   t   __name__t
   __module__R   R*   R@   (    (    (    sD   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/maps/correlation.pyR      s
   0(   t
   __future__R    t   libtbxR   t   scitbx.array_familyR   t   mmtbx.map_toolsR   t   cctbxR   R   t   objectR   (    (    (    sD   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/maps/correlation.pyt   <module>   s   