ó
€™xTc           @   s†   d  d l  m Z d  d l Td  d l Td  d l Td  d l Z d  d l Z e j	 j
 d ƒ Z d d e d e d „ Z d d d d „ Z d S(   iÿÿÿÿ(   t   division(   t   *Nt   iotbx_shelx_extg      à?c   	      C   su   d d l  m } | j d | d | ƒ } t d | d | ƒ } t | | ƒ } t | j ƒ  | | ƒ } | j ƒ  | j S(   Niÿÿÿÿ(   t   builderst   set_grad_flagst   min_distance_sym_equivt   filet   filename(	   t   iotbxR   t   crystal_structure_buildert   command_streamt   crystal_symmetry_parsert   atom_parsert   filtered_commandst   parset	   structure(	   t   clsR   R   R   R   t   strictly_shelxlR   t   buildert   stream(    (    sB   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/shelx/__init__.pyt   cctbx_xray_structure_from
   s    		
c         C   sH  d d  l  } d d l m } d d  l } | d  k rÉ | d  k	 sF t ‚ | j j | ƒ \ } } d | }	 d | }
 | j j |	 ƒ } | j j |
 ƒ } | s¨ | s¨ t ‚ | r· |
 } qÉ | rÉ |	 } qÉ n  | j	 j
 d | j	 j | j	 j | j	 j ƒ ƒ  } t d | ƒ } t | | ƒ } t | j ƒ  | ƒ } t | j ƒ  | ƒ } t | j ƒ  | ƒ } t | j ƒ  | ƒ } | j ƒ  | d  k r| d  k rÄ| d  k	 sŸt ‚ | j j | ƒ \ } } d | } n  | j j | ƒ sÜt ‚ | d | ƒ j d	 | j ƒ d
 j ƒ  j ƒ  } n | d  k s t ‚ |  | j ƒ  | j | j | j | j ƒ S(   Niÿÿÿÿ(   t   any_reflection_files   %s.inss   %s.rest   smtbx_builderR   s   %s.hkls   %s=hklf4t   crystal_symmetryi    (   t   ost   iotbx.reflection_file_readerR   t   iotbx.builderst   Nonet   AssertionErrort   patht   splitextt   isfileR   t   mixin_builder_classt9   weighted_constrained_restrained_crystal_structure_buildert   reflection_data_source_buildert   twinning_builderR
   R   t   afix_parserR   R   t   restraint_parsert   instruction_parserR   t   as_miller_arraysR   t   merge_equivalentst   arrayt   as_xray_observationst   constraintst   restraints_managert   weighting_scheme(   R   t
   ins_or_rest   hklt   fo_sqR   R   R   t   roott   _t   inst   rest
   ins_existst
   res_existsR   R   (    (    sB   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/shelx/__init__.pyt   smtbx_refinement_model_from   sR    

 	 			
(   t
   __future__R    t   iotbx.shelx.errorst   iotbx.shelx.lexert   iotbx.shelx.parserst   iotbx.shelx.writerR   t   boost.pythont   boostt   pythont
   import_extt   extR   t   TrueR   R7   (    (    (    sB   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/shelx/__init__.pyt   <module>   s   


