ó |™xTc@ snddlmZddlZddddddddddddeddeeedeeddd„ZdS(iÿÿÿÿ(tdivisionNtg{®Gáz”?gš™™™™™É?i c/C sªtjjjƒ}|jd|d|d|d|d|d|d|d|d |d | d | d | d | d| d|d|d|d|d|d|d|d|d|ƒ|S(s' Select method to build ncs_group_object order of implementation: 1) rotations,translations 2) transform_info 3) ncs_selection_params 4) ncs_phil_groups 5) spec file 6) mmcif file 7) iotbx.pdb.hierarchy.input object Args: ----- pdb_hierarchy_inp: iotbx.pdb.hierarchy.input transform_info: object containing MTRIX or BIOMT transformation info rotations: matrix.sqr 3x3 object translations: matrix.col 3x1 object ncs_selection_params: Phil parameters Phil structure ncs_group (multiple) { master_selection = '' copy_selection = '' (multiple) } ncs_phil_groups: a list of ncs_groups_container object, containing master NCS selection and a list of NCS copies selection file_name: (str) .ncs_spec or .mmcif or .pdb file name file_path: (str) spec_file_str: (str) spec format data spec_source_info: quiet: (bool) When True -> quiet output when processing files spec_ncs_groups: ncs_groups object as produced by simple_ncs_from_pdb cif_string: (str) string of cif type data use_cctbx_find_ncs_tools: (bool) Enable using of chain base NCS search use_simple_ncs_from_pdb: (bool) Enable using use_simple_ncs_from_pdb use_minimal_master_ncs: (bool) use maximal or minimal common chains in master ncs groups rms_eps (float): limit of rms difference between chains to be considered as copies error_msg_on (bool): When True, raise error if chains that are nearly the same length (but not exactly the same) and are NCS related. Raise error if NCS relations are not found process_similar_chains (bool): When True, process chains that are close in length without raising errors min_fraction_domain (float): Threshold for similarity between chains similarity define as: (number of matching res) / (number of res in longer chain) min_contig_length (int): minimum length of matching chain segments tpdb_hierarchy_inptpdb_inpttransform_infot rotationst translationstncs_selection_paramstncs_phil_groupst file_namet file_patht spec_file_strtspec_source_infot cif_stringtquiettspec_ncs_groupst pdb_stringtuse_cctbx_find_ncs_toolstuse_simple_ncs_from_pdbtuse_minimal_master_ncstrms_epst error_msg_ontprocess_similar_chainstmin_fraction_domaintmin_contig_length(tiotbxtncstncs_preprocesstncs_group_objecttpreprocess_ncs_obj(RRRRRRRR R R R R RRRRRRRRRRRt ncs_group_obj((s@/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/ncs/__init__.pytinputs4I (t __future__Rtiotbx.ncs.ncs_preprocessRtNonetTruetFalseR(((s@/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/ncs/__init__.pyts0