ó ‚™xTc@ s‹ddlmZddlmZddlmZddlmZddlZddl Z dd„Z e dkr‡e d ej d ƒndS( iÿÿÿÿ(tdivision(tpdb(tSorry(tmultimerNsphenix.pdb.biomt_reconstructioncC sEt|ƒdkr%tddƒ‚nd|ks=d|krKttƒGHnöt|ƒdkrltdƒ‚nÕtjj|dƒs¬dj|dtjƒƒGHtd ƒ‚n•t d |dd d ƒ}|j dkr/t|ƒdkr|j |d ƒd|d GHqA|j ƒdGHtjƒd|j GHndj|dƒGHdS(s` (string) -> file Reconstruction of the biological assembly multimer by applying BIOMT transformation, from the REMARK 350 in the pdb file, to all chains in file. Produce a new pdb file containg the biological assembly multimer information Arguments: args: a string containing the pdb file name, 'file_name.pdb' and an optional output file name if no file name is given, the output file will have the name 'biological_assembly_file_name.pdb' >>> phenix.pdb.biomt_reconstruction input_file_name.pdb bio-assembly reconstructed pdb file was added to your current directory /path/biological_assembly_input_file_name.pdb >>> phenix.pdb.biomt_reconstruction input_file_name.pdb output_file_name.pdb bio-assembly reconstructed pdb file was added to your current directory /path/output_file_name.pdb @author: Youval Dar (LBL 2013) is=No input filename is given. Please provide a pdb file name. s7>>> phenix.pdb.biomt_reconstruction input_file_name.pdbs--helps-his"To many input parameters are givens1There is no file {} in the current directory {}sFile name errort file_nametreconstruction_typetbais+$s file was added to your current directorysGbio-assembly reconstructed pdb file was added to your current directoryt/sNo BIOMT information in {}N( tlenRthelptbiomt_reconstructiontostpathtisfiletformattgetcwdRtnumber_of_transformstwritetpdb_output_file_name(targst command_nametm((sU/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/command_line/biomt_reconstruction.pyR s&  t__main__Ri( t __future__RtiotbxRt libtbx.utilsRt!iotbx.pdb.multimer_reconstructionRtsysR R t__name__targv(((sU/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/command_line/biomt_reconstruction.pyts 0