ó
—™xTc           @   s¬   d  d l  m Z d  d l m Z m Z d  d l Z d  d l Z d  d l Z d  d l	 m
 Z
 m Z d e
 f d „  ƒ  YZ d e f d „  ƒ  YZ d	 e e e f d
 „  ƒ  YZ d S(   iÿÿÿÿ(   t   division(   t   constraintst   least_squaresN(   t   crystal_structure_buildert$   restrained_crystal_structure_buildert%   constrained_crystal_structure_builderc           B   s>   e  Z d  „  Z d „  Z d „  Z d „  Z d „  Z d „  Z RS(   c         O   s/   t  t |  ƒ j | | Ž  g  |  _ d  |  _ d  S(   N(   t   superR   t   __init__R   t   Nonet   temperature_in_celsius(   t   selft   argst   kwds(    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyR      s    	c         C   s#   |  j  j t  j j | | ƒ ƒ d S(   s$   Add a constraint on the occupancies of a pair of scatterers that is
        affine, i.e. linear_form shall be ((a0, a1), b) and then
           a0*occ0 + a1*occ1 = b
        where (occ0, occ1) are the occupancies of the scatterers whose indices
        are given in `scatterer_indices`.
    N(   R   t   appendt	   occupancyt    occupancy_pair_affine_constraint(   R
   t   scatterer_indicest   linear_form(    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyt$   add_occupancy_pair_affine_constraint   s    	c         C   sd   |  j  j ƒ  } | | } | | } | j j ƒ  r` |  j j t j j d | d | d | ƒ ƒ n  d  S(   Nt   u_eq_scatterer_idxt   u_iso_scatterer_idxt
   multiplier(   t	   structuret
   scattererst   flagst	   use_u_isoR   R   t   adpt    u_iso_proportional_to_pivot_u_eq(   R
   t   u_iso_scatterer_indext   u_eq_scatterer_indexR   t   sct   sc_eqt   sc_iso(    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyt$   add_u_iso_proportional_to_pivot_u_eq   s    

	c         C   s   t  t j j | ƒ S(   N(   t   getattrR   t   geometricalt   all(   R
   t   constraint_name(    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyt    make_geometrical_constraint_type-   s    c      
   C   sG   t  |  j j ƒ  ƒ |  _ | d | d | d | d |  j | ƒ |  _ d  S(   Nt   rotatingt
   stretchingt   bond_lengtht   pivot(   t   lenR   R   t   firstt   current(   R
   t   type_R)   R'   R(   t   pivot_relative_pos(    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyt   start_geometrical_constraint0   s
    c         C   sJ   t  |  j j ƒ  ƒ } t t |  j | ƒ ƒ |  j _ |  j j	 |  j ƒ d  S(   N(
   R+   R   R   t   tuplet   xrangeR,   R-   t   constrained_site_indicesR   R   (   R
   t   last(    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyt   end_geometrical_constraint:   s    (   t   __name__t
   __module__R   R   R!   R&   R0   R5   (    (    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyR      s   					
t   weighting_scheme_builderc           B   s   e  Z d  d  d  d d „ Z RS(   i    i   i   c         C   sd   | d k s t  d ƒ ‚ | d k rT | d k rT | d k rT t j | | ƒ |  _ n t d ƒ ‚ d  S(   Ni   i   s+   Non-Wilsonian ShelX weighting not supportedi    s8   ShelX weighting scheme with non-zero parameter c, d or egUUUUUUÕ?(   t   AssertionErrorR   t   mainstream_shelx_weightingt   weighting_schemet   NotImplementedError(   R
   t   at   bt   ct   dt   et   f(    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyt   make_shelx_weighting_schemeB   s
    $gUUUUUUÕ?(   R6   R7   RC   (    (    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyR8   @   s   t9   weighted_constrained_restrained_crystal_structure_builderc           B   s   e  Z RS(    (   R6   R7   (    (    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyRD   K   s   (   t
   __future__R    t   smtbx.refinementR   R   t    smtbx.refinement.constraints.adpt   smtbxt,   smtbx.refinement.constraints.geometrical.allt&   smtbx.refinement.constraints.occupancyt   iotbx.buildersR   R   R   t   objectR8   RD   (    (    (    sO   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/builders_depending_on_smtbx.pyt   <module>   s   3