ó Ñ%Tc@sdZddd„ƒYZdS(s-A class for storing data about a suite of RNAtSuitecBs_eZdZd„Zd„Zd„Zd„Zd„Zd„Zd„Z d„Z d „Z RS( sA class for storing data about a suite of RNA NOTE: No actual data is stored in the Suite object other than a link to the starting and ending nucleotides. All functions defined here simply call the appropriate Nucleotide object function. cCs||_||_dS(s5Initialize a Suite object ARGUMENTS: startingNuc - a Nucleotide object representing the starting nucleotide of the suite endingNuc - a Nucleotide object representing the ending nucleotide of the suite RETURNS: an initialized Suite object N(t startingNuct endingNuc(tselfRR((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pyt__init__s cCs |jjƒS(s*Calculate the sugar distance for the suite(RtstartingSugarDist(R((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pyt sugarDist)scCs |jjƒS(sCalculate theta for the suite(Rttheta(R((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pyR-scCs |jjƒS(sCalculate eta for the suite(Rteta(R((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pyR1scCs |jjƒS(sSCalculate the starting base-phosphate perpendicular (P-perp) distance for the suite(Rtpperp(R((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pyt startingPperp5scCs |jjƒS(sQCalculate the ending base-phosphate perpendicular (P-perp) distance for the suite(RR (R((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pyt endingPperp9scCs |jjƒS(sACalculate the starting phosphate-phosphate distance for the suite(RtphosDist(R((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pytstartingPhosDist=scCs |jjƒS(s?Calculate the ending phosphate-phosphate distance for the suite(RR (R((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pytendingPhosDistAscCs |jjS(sThe suite number(RtresNum(R((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pytsuiteNumEs( t__name__t __module__t__doc__RRRRR R R RR(((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pyRs       N((RR(((sS/public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/suite.pyts