ó
Ń%Tc           @   sU   d  Z  d d l m Z d d l Z d Z d d	 d     YZ d e f d     YZ d S(
   sv   Calculate the probabilities of various models for a given distance measure using linear interpolation or extrapolationi˙˙˙˙(   t   floorNt   ,t
   SmoothProbc           B   s#   e  Z d  Z d   Z d d  Z RS(   sv   Calculate the probabilities of various models for a given distance measure using linear interpolation or extrapolationc         C   s{  d |  _ d |  _ d |  _ i  |  _ d |  _ d |  _ | |  _ t | d  } | j   j	 t
  } | j d  g  | D] } | j   ^ qw } | |  _ | j   j	 t
  } t | j d   |  _ x4 t |  D]& \ } } t |  g |  j | | <qŇ W| j   j	 t
  } t | j d   t |  j  |  _ x8 t |  D]* \ } } |  j | | j t |   qCW|  j d } xŇ | D]Ę }	 t |	 j    d k rŠqn  |	 j	 t
  } |  j |  j t |  j  }
 | j d  } |
 | | k r| |
 | k rd |  j  n  x8 t |  D]* \ } } |  j | | j t |   q!WqWt |  j | d  |  _ | j   d S(   sÎ   Creates and initialize a smoothProb object
        
        ARGUMENTS:
            inputFile - a file containing smoothed training data
        RETURNS:
            an initialized SmoothProb object
        t   ri    i'  s'   Incorrect smoothProb step size in file N(   t   Nonet   _SmoothProb__xStartt   _SmoothProb__xStept   _SmoothProb__fileNamet   _SmoothProb__yDatat   _SmoothProb__yLent   _SmoothProb__labelst   opent   readlinet   splitt   DELIMt   popt   stript   floatt	   enumeratet   appendt   lent   rstript   close(   t   selft   fileNamet   inputt   labelst   xt   curdatat   curindext   curvaluet   ept   curlinet   xValt   curdist(    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/smoothProb.pyt   __init__   sB    									%" &c         C   s  t  t | |  j |  j   } i  } | d k  r | |  j |  j } xE|  j D]C } |  j | d |  j | d } |  j | d | | | | <qP Wnô | |  j d k r | |  j |  j |  j d } xż |  j D]C } |  j | d |  j | d } |  j | d | | | | <qÖ Wnn | |  j |  j | } xS |  j D]H } |  j | | d | |  j |  j | | d | |  j | | <qBWt | j    }	 y9 t	 g  | j
   D] \ } }
 | |
 |	 f ^ qł } Wn t k
 rřt d   n X| d k r	| S| | Sd S(   sŘ  calculate the probabilities for a given distance
        
        ARGUMENTS:
            dist   - the distance
        OPTIONAL ARGUMENTS:
            label  - what model to calculate the probability for
                     must match a label in the first line of the input file
        RETURNS:
            if label is given, the probability that the model label is correct
            if label is not given, a dictionary containing probabilities for all models
        i    i   i˙˙˙˙iţ˙˙˙s1   Underflow error: all probabilities equal to zero.N(   t   intR    R   R   R
   R   R	   t   sumt   valuest   dictt	   iteritemst   ZeroDivisionErrort   SmoothProbErrorR   (   R   R!   t   labelt   xPost   yDictt   numStepst   curlabelt   yStept	   remaindert	   totalProbt   curval(    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/smoothProb.pyt   calcProb_   s.      $ $F9N(   t   __name__t
   __module__t   __doc__R#   R   R4   (    (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/smoothProb.pyR      s   	@R*   c           B   s   e  Z d    Z d   Z RS(   c         C   s   | |  _  d  S(   N(   t   value(   R   t   description(    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/smoothProb.pyR#      s    c         C   s   t  |  j  S(   N(   t   reprR8   (   R   (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/smoothProb.pyt   __str__   s    (   R5   R6   R#   R;   (    (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/smoothProb.pyR*      s   	(    (   R7   t   mathR    t   sysR   R   t	   ExceptionR*   (    (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/rcrane/smoothProb.pyt   <module>   s
   v