ó
©%�Tc           @   sÔ   d  d l  Z  d  d l Z e j d ƒ d  d l Z d Z e j ƒ  Z d  d l Z e j ƒ  Z d „  Z	 d Z
 d „  Z d „  Z d „  Z d	 „  Z d
 „  Z d „  Z d „  Z d d „ Z d „  Z d „  Z d „  Z d S(   iÿÿÿÿNi
   i   c          G   s/   t  j ƒ  d j t t |  ƒ ƒ GHt  j ƒ  d  S(   Nt    (   t
   safe_printt   acquiret   joint   mapt   strt   release(   t   txt(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   print_thread    s    
s   coot-pdbe-imagesc           C   s   d  S(   N(    (    (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt	   coot_pdbe)   s    c         C   s[   d d  l  } t j j |  ƒ s+ d G|  GHt St |  d ƒ } | j | ƒ } | j ƒ  | Sd  S(   Niÿÿÿÿs   file not foundt   r(   t   jsont   ost   patht   isfilet   Falset   opent   loadt   close(   t	   file_nameR   t   fint   s(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   get_recent_json-   s    	
c   
         s�  ‡ f d †  ‰  d „  ‰ t  j t  j ƒ ‰ t  j ƒ  } t  j t d ƒ } t  j ƒ  } t  j t d ƒ ‰ ˆ j | d | d ƒ ˆ j |  ƒ ˆ j	 d ƒ ˆ j
 | ƒ | j | t t d ƒ | j ˆ ƒ | j t  j t  j ƒ t ‡  ‡ f d †  | ƒ | j	 d ƒ | j | t t d ƒ t  j | ƒ } | j | t t d ƒ ‡ f d †  } | j d | ƒ ˆ j d	 | ƒ ˆ j ƒ  x t d
 ƒ D] }	 t |	 ƒ q…Wˆ S(   s  geometry is an improper list of ints.
    
    return the h_box of the buttons.
    
    a button is a list of [label, callback-thunk, text-description]
    
    If check-button-label is False, don't make one, otherwise create with with
    the given label and "on" state.
    c            s1  |  d } |  d } t  |  ƒ d k r0 |  d n t } t j ƒ  } t j t d ƒ } t j t d ƒ } t j t d ƒ } | j t j | ƒ t d ƒ | j | t d ƒ | j | t d ƒ | j | ƒ | j d | ƒ t	 | ƒ s| d }	 | d }
 ˆ  |	 |
 | | ƒ n  | j | t t d ƒ | j
 ƒ  d  S(   Ni    i   i   t   clicked(   t   lenR   t   gtkt   Buttont   HBoxt
   pack_startt   Labelt   addt   connectt   callablet   show(   t   button_infot   vboxt   button_labelt   callbackt   active_button_label_funct   buttont   button_hboxt   protein_ribbon_hboxt   ligands_hboxt   entry_idt   ligand_tlc_list(   t   make_active_ligand_button(    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt8   add_button_info_to_box_of_buttons_vbox_for_ligand_imagesR   s(    

	

	c   
      S   s·   d } x] | D]U } d | d t  | ƒ } t j j t | d t  | ƒ d ƒ } t | | | ƒ q Wd } |  d t  | ƒ d } d	 | } t j j t | ƒ }	 t | |	 | ƒ d  S(
   Nid   s:   http://www.ebi.ac.uk/pdbe-srv/pdbechem/image/showNew?code=s   &size=t   -s   .gifix   t   _cbcs   .pngs'   http://www.ebi.ac.uk/pdbe/entry-images/(   R   R   R   R   t   coot_pdbe_image_cache_dirt   cache_or_net_get_image(
   R+   R,   R*   R)   t
   image_sizet   tlct	   image_urlt
   image_namet   image_name_stubt   entry_image_file_name(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR-   w   s    		i   i    i   c            s   ˆ  |  ˆ ƒ S(   N(    (   R"   (   R.   t   inside_vbox(    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   <lambda>Ÿ   s    c             sJ   t  } t j ƒ  s< x' t j ƒ  s8 t j ƒ  t j ƒ  q Wn  ˆ  j ƒ  t  S(   N(   R   t
   coot_queuet   emptyt   gett	   task_donet   destroy(   t   argsR9   (   t   window(    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   delete_event©   s    

R   R?   i   (   R   t   Windowt   WINDOW_TOPLEVELt   ScrolledWindowt   VBoxR   t
   HSeparatort   set_default_sizet	   set_titlet   set_border_widthR   R   t   Truet   add_with_viewportt
   set_policyt   POLICY_AUTOMATICt   POLICY_ALWAYSR   R   t   pack_endR   t   show_allt   ranget   downloader_thread(
   t   window_namet   geometryt   buttonst   close_button_labelt   scrolled_wint   outside_vboxt   h_sept	   ok_buttonRB   t   i(    (   R.   R9   R-   RA   sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt(   dialog_box_of_buttons_with_async_ligandsC   s6    %	
c            si   d d  l  } d d  l ‰  d d  l } d „  } ‡  f d †  } t j |  | f ƒ t j d | | | ƒ d  S(   Niÿÿÿÿc         S   sW   t  j j |  ƒ rO t j ƒ  } | j |  ƒ | j | t t d ƒ | j ƒ  t St	 Sd  S(   Ni   (
   R   R   R   R   t   Imaget   set_from_fileR   R   R!   RK   (   R6   t   hboxt   pixmap(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   show_image_when_readyÈ   s    
c            s_   y ˆ  j  |  | ƒ \ } } Wn< t j k
 rC t d |  d ƒ n t d |  d ƒ n Xd  S(   Ns   BL ERROR:: timout downloadiÎÿÿÿs   BL ERROR:: failed download(   t   urlretrievet   sockett   timeoutR   (   t   urlR   t   url_info(   t   urllib(    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt	   get_imageÔ   s    iè  (   t   threadRh   t	   threadingR;   t   putt   gobjectt   timeout_add(   R5   R6   R`   Rj   Rk   Rb   Ri   (    (   Rh   sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR2   Â   s    		c            s/   d d  l  ‰  ‡  f d †  } t j | d ƒ d  S(   Niÿÿÿÿc             s¤   x� t  rŸ y{ t j ƒ  \ }  } y ˆ  j |  | ƒ \ } } Wn< t j k
 ra t d |  d ƒ n t d |  d ƒ n Xt j ƒ  Wq t j	 k
 r› d  SXq Wd  S(   Ns   BL ERROR:: timout downloadiÎÿÿÿs   BL ERROR:: failed download(
   RK   R;   R=   Rc   Rd   Re   R   R>   t   Queuet   Empty(   Rf   R   Rg   (   Rh   (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyRi   ä   s    	(    (   Rh   Rj   t   start_new_thread(   t	   thread_noRi   (    (   Rh   sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyRS   à   s    c         C   sø   t  j j d t t |  ƒ ƒ ƒ } | d } | } d }	 d }
 d } t } d } d } t } d } d } t } t t t j	 ƒ r� t j
 d ƒ n	 d g a t |  | | | |	 |
 | | | | | | | d | | | ƒ } | a t  j j | ƒ rð | St Sd  S(   Ns   coot-refmacs   -refmaced.pdbt    i    s   MAKE NEWLIGAND CONTINUE(   R   R   R   t
   strip_patht   file_name_sans_extensionR   t   refmac_extra_paramst
   isinstancet   typest   ListTypet   appendt   run_refmac_by_filenameR   (   t   pdb_in_file_namet   mtz_file_namet   mtz_refmaced_file_namet   f_colt   sigf_colt
   r_free_colt   refmac_stubt   pdb_out_file_namet   mtz_out_file_namet   extra_cif_lib_filenamet   imol_refmac_countt   swap_map_colours_post_refmact   imol_mtz_moleculet   show_diff_map_flagt   phase_combine_flagt   phib_fom_pairt   force_n_cyclest   make_molecules_flagt   save_refmac_extra_paramst   refmac_result(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt%   refmac_calc_sfs_make_mtz_with_columns÷   sD    
	c         C   s   t  |  | | d d d ƒ d  S(   Ns
   F.F_sigF.Fs   F.F_sigF.sigFs   Rfree.Flag.flag(   R�   (   R|   R}   R~   (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   refmac_calc_sfs_make_mtz)  s    	Rs   c            sE  d d  l  ‰ d d  l ‰ d  a t d ƒ } | d k sC t d ƒ nþd „  ‰ ‡ f d †  } ‡ f d †  } d } d	 ˆ | } d
 ˆ d } t j j d ˆ | ƒ }	 t j j d d ˆ d ƒ }
 t j j d d ˆ d ƒ } t j j d d ˆ d ƒ ‰ d t	 t
 ƒ d ‰ | |	 |
 ƒ } | d ‰ | d ‰	 | d ‰ | d ‰ | d ‰ | d ‰ | d ‰ | d ‰  | d ‰
 | d ‰ | d ‰ | d } | d } | d } | d  ‰ ‡ ‡ f d! †  ‰ d" „  ‰ ‡  ‡ ‡ ‡ ‡ ‡ ‡ ‡	 ‡
 ‡ ‡ ‡ ‡ ‡ ‡ ‡ f d# †  } t j d$ | ˆ ˆ ˆ | ˆ  ˆ | ˆ	 ˆ ˆ ˆ ˆ ˆ ƒ t j j |	 ƒ sœd% a t j ˆ | |	 ˆ	 ˆ f ƒ } x  t d% k r˜t j t ƒ q|Wn  t d& k rAt |	 ƒ } t | ƒ s×d' |	 } t | ƒ n  |  d( k rìd) a qAt j j |
 ƒ ot j j ˆ ƒ s8t j | | |
 | |	 ˆ ˆ ˆ f ƒ qAd) a n  d  S(*   Niÿÿÿÿs   coot-downloadi    s!   Failed to make download directoryc         S   s6   t  |  d d d d d ƒ t  |  d d d d d ƒ d  S(   Nt   FWTt   PHWTRs   i    t   DELFWTt   PHDELWTi   (   t   make_and_draw_map(   t   refmac_out_mtz_file_name(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   make_and_draw_map_localD  s    c   	         s  ‡  f d †  } d G| G| G| Gˆ  GHt  j j ˆ  ƒ rW t  j ˆ  ƒ j d k rW d a nµ t d ƒ d k sv t d ƒ n– t  j j | ƒ r© t  j | ƒ j d k r© d a nD d a t j	 ˆ |  | | | f ƒ } x t d k rì t
 j t ƒ qÐ Wt d	 k r| | | | ƒ n  d  S(
   Nc            sƒ   d a  t |  | ƒ } | d k s= d |  d } | GHd a  nB d a  t | | ˆ  ƒ } d G| GHt | t j ƒ sy d a  n d	 a  d  S(
   Ns   converting-to-mtzi   s   WARNING:: Failed to convert s    to an mtz filet   fails   running-refmac-for-phasess         refmac-result: s   fail-refmact   done(   t   download_thread_statust   mmcif_sfs_to_mtzR‘   Rw   Rx   t	   TupleType(   t   sfs_cif_file_namet   sfs_mtz_file_namet   pdb_file_namet   convert_statusR   R�   (   R—   (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   convert_to_mtz_and_refmacP  s    					s   in get_sfs_run_refmaci    Rš   t   coot_refmacs'   Can't make output directory coot-refmact   converts   downloading-sfss   done-download(   R   R   R   t   statt   st_sizeR›   t   make_directory_maybet   info_dialogRj   Rq   R   t   main_iterationR   (	   t   sfs_cif_urlRž   RŸ   R    R—   t   cif_progress_barRA   R¢   t
   cif_thread(   t   download_file_and_update_widget(   R—   sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   get_sfs_run_refmacH  s,    &			c            sÝ  t  j t  j ƒ ‰  d ˆ } t  j t d ƒ } t  j d ƒ } t  j t d ƒ } t  j t d ƒ } t  j t d ƒ } t  j t d ƒ } t  j d ƒ }	 t  j d ƒ }
 t  j d ƒ } t  j d ƒ } t  j d	 ƒ } t  j ƒ  } t  j ƒ  } t  j ƒ  } t  j	 d
 d ƒ } t  j	 d
 d ƒ } t  j	 d
 d ƒ } t  j	 d d ƒ } t  j	 d d ƒ } t  j	 d d ƒ } t  j	 d d ƒ } t  j	 d d ƒ } t  j	 d d ƒ } t  j
 ƒ  } ˆ  j | ƒ | j | t t d ƒ | j |	 t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j |
 t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j | t t d ƒ | j d ƒ ˆ  j | ƒ ˆ  j d ƒ ˆ  j ƒ  | j ƒ  | j ƒ  | j ƒ  | j ƒ  | j ƒ  | j ƒ  | j ƒ  | j ƒ  | j t ƒ | j t ƒ | j t ƒ ‡  f d †  } | j d | ƒ i ˆ  d 6| d 6| d 6| d 6| d 6| d 6| d 6| d 6| d 6| d 6| d 6| d 6| d 6| d 6| d  6S(!   Ns   Download and make SFS for i   s
     Cancel  i   s   Download PDB:  s   Download SFs cif:s   Running Refmac:s   Running Refmac Faileds   Something Went Wrongs   gtk-executei   s   gtk-oks   gtk-noi   i   c             s   ˆ  j  ƒ  d a d  S(   Nt	   cancelled(   R?   R›   (   R@   (   RA   (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   cancel_button_cbñ  s    
R   RA   t   pdb_progress_barR«   t   refmac_progress_bart   refmac_fail_labelt
   fail_labelt   pdb_execute_icont   cif_execute_icont   refmac_execute_icont   pdb_fail_icont   cif_fail_icont   refmac_fail_icont   pdb_good_icont   cif_good_icont   refmac_good_icon(   R   RC   RD   RF   R   R   R   R   t   ProgressBart   image_new_from_stockRG   RI   R   RK   RJ   R   RQ   t   hidet   set_sensitiveR   (   R    Rž   t   dialog_namet	   main_vboxt   cancel_buttont   buttons_hboxt   pdb_hboxt   cif_hboxt   refmac_hboxt	   pdb_labelt	   cif_labelt   refmac_labelR³   R´   R±   R«   R²   Rµ   R¶   R·   R»   R¼   R½   R¸   R¹   Rº   RZ   R°   (   R+   (   RA   sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   progress_dialog¤  s¤    










s   .ents)   http://www.ebi.ac.uk/pdbe/entry-files/pdbs'   http://www.ebi.ac.uk/pdbe/entry-files/rs   sf.entR
   s   sf.cifs   sf.mtzs   -refmac.mtzs   refmac-from-coot-s   .logRA   R±   R«   R²   R³   R´   Rµ   R¶   R·   R»   R¼   R½   R¸   R¹   Rº   c            sÔ   d „  ‰  ‡ f d †  } y> t  j | ƒ ˆ j |  | | ‡  f d † ƒ \ } } d a Wnw t j k
 r d G|  d GHd a nQ t k
 r¢ d G|  d GHd a n. t d	 k sÇ d
 G|  d GHd a qÐ d GHn Xd  S(   Nc         S   sd   t  |  | d | d ƒ } t d k r4 t j ƒ  n  | d k rI d } n  t j | j | d ƒ d  S(   Nid   R¯   g      Y@(   t   minR›   t   syst   exitRm   t   idle_addt   set_fraction(   t	   numblockst	   blocksizet   filesizet   progress_bart   percent(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   update_progressbar_in_download-  s    	c              s%   ˆ  j  d ƒ d t k r t St Sd  S(   Ng{®Gáz„?t   downloading(   t   sleepR›   RK   R   (    (   t   time(    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   sleeper9  s    c            s   ˆ  |  | | | ƒ S(   N(    (   t   nbt   bst   fsRÕ   (   R×   (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR:   D  s    s   done-downloads   BL ERROR:: timout downloadiÎÿÿÿR™   s   BL ERROR:: ioerror downloadingR¯   s&   BL ERROR:: general problem downloadings   BL INFO:: cancelled download(   Rm   RÐ   Rc   R›   Rd   Re   t   IOError(   Rf   R   RÕ   RA   RÛ   t   file_name_localRg   (   RÚ   Rh   (   R×   sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR­   *  s$    	
			c         S   sj   d } t  | ƒ } | rf | d } | d k rf | | } | d k rc | d k rc |  j | ƒ qc qf n  d  S(   Ni^  g      Y@i    g      ð?g        (   t   file_n_linesRÑ   (   R²   t   log_file_namet	   max_linest   n_linest   n_lines_restt   f(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   update_refmac_progress_barU  s    

c             sI  t  d k r ˆ j t ƒ n  t  d k rY ˆ j d ƒ ˆ j ƒ  ˆ j ƒ  ˆ  j t ƒ n  t  d k r‚ ˆ j d ƒ ˆ j d ƒ n  t  d k rÙ ˆ j d ƒ ˆ j d ƒ ˆ j t ƒ ˆ  j ƒ  ˆ j ƒ  ˆ ˆ ˆ ƒ n  t  d k rˆ
 j ƒ  ˆ j ƒ  ˆ	 j ƒ  t St  d k r!ˆ j ƒ  t St  d k rEˆ ˆ ƒ ˆ j ƒ  t St S(	   Ns   downloading-pdbs   downloading-sfsg      ð?s   converting-to-mtzs   running-refmac-for-phasess   fail-refmacR™   Rš   (   R›   RÁ   RK   RÑ   RÀ   R!   R   R?   (   R@   (   R¶   R¼   R«   R´   R˜   Rµ   R»   R±   R·   Rº   R³   t   refmac_log_file_nameR—   R²   Rç   RA   (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt    update_dialog_and_check_downloadc  s>    










iÈ   s   downloading-pdbs   done-downloads    Oops - failed to correctly read s   include-sfsRš   (   Rh   RÚ   t   NoneR›   R§   R¨   R   R   R   R   t   refmac_countRm   Rn   R   Rj   Rq   R   R©   R   t   read_pdbt   valid_model_molecule_qm(   t   include_get_sfs_flagR+   t   method_stringt   statusR®   RÌ   t   coords_typet   pdb_urlRª   R    Rž   RŸ   t   progr_widgetsR½   R¸   R¹   Ré   t
   pdb_threadt   imolR   (    (   R¶   R¼   R«   R­   R+   R´   R˜   Rµ   R»   R±   R·   Rº   R³   Rè   R—   R²   RÚ   Rç   Rh   RA   sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   pdbe_get_pdb_and_sfs_cif3  s‚    	\f














+	<-		
		
	c            sÂ   d d  l  ‰ d d  l } d  a d „  } d ‰ d „  ‰ d „  ‰ ‡ ‡ ‡ f d †  ‰ ‡ f d †  ‰ d „  } ‡ ‡ ‡ ‡ f d	 †  ‰  ‡  f d
 †  } | | |  ƒ ƒ } t d d d g | d ƒ d  S(   Niÿÿÿÿc         S   s   |  d d S(   Nt	   ResultSett   Result(    (   t   js(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   get_dic_all_entriesÐ  s    i   c         S   s7   t  |  ƒ } | d k  r  d |  Sd |  d d !d Sd  S(   Ni<   s   
     i    s   ...(   R   (   t   namet   sl(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   pad_and_truncate_nameÙ  s    c         S   s/   t  |  ƒ } | d k  r |  S|  d d !d Sd  S(   NiF   i    s   ...(   R   (   Rû   Rü   (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   truncate_nameá  s    c            sñ   |  s
 d Sg  } xª |  D]¢ } | d } | d } | d } | sT | j  d ƒ q n  | ss | j  ˆ | ƒ ƒ q n  | ˆ  k r¬ | r– | d | } n  | j  ˆ | ƒ ƒ q | j  d ƒ q Wˆ j | d ƒ } t | ƒ d k ré d | Sd Sd  S(   NRs   t   Namet   Codet   NumberOfAtomss   : i    s	   
Ligands:(   Rz   R   R   (   t
   ligand_dict   ligand_string_listt   ligandRû   t   codet   n_atomst   ligand_string(   t   n_atoms_limit_small_ligandsRý   t   string(    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   make_ligands_stringé  s,    


c            s~   |  s
 g  Sg  } xc |  D][ } | d } | d } | s= q n  | sV | j  | ƒ q q | ˆ  k r | j  | ƒ q q W| Sd  S(   NR   R  (   Rz   (   R  t   ligand_listR  R  R  (   R  (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   make_ligands_tlc_list  s    

c         S   s   d  S(   N(    (   R+   R,   (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   make_active_ligand_button_func+  s    c            sV  d „  } t  t ƒ t |  d ƒ ‰  ˆ  r/ ˆ  n d } |  d } |  d } |  d } | |  d ƒ } | ro | n d ‰ | r‡ ˆ | ƒ n d	 } t | t ƒ r¨ ˆ | ƒ n d	 } |  d
 }	 ˆ |	 ƒ }
 ˆ |	 ƒ } | rà d | n d	 } | d ˆ  d ˆ | | |
 } ˆ d k r3| ‡  ‡ f d †  ˆ  | g g S| ‡  ‡ f d †  ˆ  | g g Sd  S(   Nc         S   sB   d } |  s d } n) |  d } | s. d } n t  | d ƒ } | S(   NRs   s   No Authors listedi    s   No Citation tablet   Authors(   t   string_append_with_spaces(   t   citation_dict   citationt   citation_js(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   make_authors_string5  s    	
	t   EntryIDs   missing entry idt   Methodt
   Resolutiont   Titlet   Citations   Unknown methodRs   t   ContainsLigandss        Resolution: s   
s   : s   x-ray diffractionc            s   t  d ˆ  ˆ ƒ S(   Ns   include-sfs(   Rö   (   t   func(   R+   t   method_label(    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR:   Y  s   c            s   t  d ˆ  ˆ ƒ S(   Ns   no-sfs(   Rö   (   R  (   R+   R  (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR:   a  s   (   R§   R1   R   Rw   (   t   dicR  t   entry_labelt   method_itemt   resolution_itemt
   title_itemt   authors_stringt   title_labelt   authors_labelt   ligandst   ligands_stringR,   t   resolution_stringt   label(   R
  R  Rý   Rþ   (   R+   R  sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   handle_pdb_entry_entity2  s.    	



!
"c            s   t  ˆ  |  ƒ S(   N(   R   (   R  (   R(  (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   handle_pdb_entry_entitiesk  s    s   Recent Entriesi¼  iô  s    Close (   R	  Rj   Rê   R›   R]   (   t   tRj   Rú   R  R)  t   button_list(    (   R(  R
  R  R  Rý   R	  Rþ   sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   recent_structure_browserÈ  s    			" 	9c          C   s¬   t  j t  j ƒ }  d } t  j t d ƒ } t  j d ƒ } t  j ƒ  } |  j | ƒ | j | t t d ƒ | j | t t d ƒ |  j	 | ƒ |  j
 d ƒ |  j ƒ  | |  f S(   Ns   Getting recent entries list...i   (   R   RC   RD   RF   R   R   R¾   RI   R   R   RJ   RQ   (   RA   RÂ   RÃ   R'  RÕ   (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   recent_entries_progress_dialogs  s    
c             sË   d d  l  ‰ d d  l }  d } d ‰ t d ƒ t ƒ  } d |  j f d „  ƒ  Y‰  d ˆ j f ‡  ‡ f d †  ƒ  Y} | | ˆ | d	 | d
 ƒ ‰ ˆ j ƒ  ‡ ‡ f d †  } ‡ f d †  } t j | ƒ d  S(   Niÿÿÿÿs8   http://www.ebi.ac.uk/pdbe-apps/jsonizer/latest/released/s   latest-releases.jsons%   Retrieving list of latest releases...t   MyURLopenerc           B   s   e  Z d  „  Z RS(   c         S   s   d  S(   N(    (   t   selfRf   t   fpt   errcodet   errmsgt   headers(    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   http_error_default–  s    (   t   __name__t
   __module__R4  (    (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR.  •  s   t   GetUrlThreadc              sJ   e  Z ‡ f d  †  Z d „  Z d „  Z d „  Z d „  Z ‡  f d †  Z RS(   c            sA   | |  _  | |  _ | |  _ | |  _ d  |  _ ˆ  j j |  ƒ d  S(   N(   Rf   R   RA   t   progressbarRê   Rð   t   Threadt   __init__(   R/  Rf   R   R8  RA   (   Rk   (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR:  œ  s    					c         S   s   |  j  S(   N(   Rð   (   R/  (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   get_url_status¤  s    c         S   s/   t  | | d | ƒ } t j |  j | ƒ d  S(   Nid   (   t   intRm   RÐ   t   update_progressbar(   R/  t   countt	   blockSizet	   totalSizeRÖ   (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   update_function§  s    c         S   s   |  j  j ƒ  t S(   N(   R8  t   pulseR   (   R/  R>  (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR=  ¬  s    c         S   s   |  j  j ƒ  d  S(   N(   RA   R?   (   R/  (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   destroy_window°  s    c            s¢   y7 ˆ  ƒ  j  |  j |  j |  j ƒ \ |  _ } d |  _ WnT t j k
 rY d G|  j GHn5 t k
 rn d GHn  d |  _ t j	 t
 d ƒ n Xt j	 |  j ƒ d  S(   Ni    s   BL ERROR:: timout downloads   BL ERROR:: ioerrori   s,   Failed to get recent entry list from server.(   t   retrieveRf   R   RA  Rð   Rd   Re   Rß   Rm   RÐ   R¨   RC  (   R/  Rg   (   R.  (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   run³  s    *	(   R5  R6  R:  R;  RA  R=  RC  RE  (    (   R.  Rk   (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyR7  ›  s   				i    i   c              s*   ˆ j  ƒ  d k r& t t ˆ  ƒ ƒ t St S(   Ni    (   R;  R,  R   R   RK   (    (   t   json_file_nameRj   (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   start_tableÅ  s    c              s'   ˆ  j  ƒ  d k r t St j d ƒ t S(   Ni    g{®Gáz”?(   R;  R   RÚ   RÙ   RK   (    (   Rj   (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   run_sleeperË  s    (	   Rk   Rh   t   add_status_bar_textR-  t   FancyURLopenerR9  t   startRm   RÐ   (   Rh   Rf   t   progress_barsR7  RG  RH  (    (   R.  RF  Rj   Rk   sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   pdbe_latest_releases_guiˆ  s    
	"&	
(   Rm   Rd   t   setdefaulttimeoutRo   t	   max_queueR;   Rj   t   allocate_lockR   R   R1   R	   R   R]   R2   RS   R�   R‘   Rö   R,  R-  RM  (    (    (    sV   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/python2.7/site-packages/coot/get_recent_pdbe.pyt   <module>   s*   							2	ÿ •	«	