ó
šxTc           @   sç  d  d d d d d d d d d	 d
 d d d d d d d d d d d d d d d d d d d d g Z  d d d d d d  d! d" d# d$ d% d& d' d( d) d* d+ d, d, d, d, d, d, d- d, d, d, d, d, d, d, g Z d d d d d d d d d. d/ d0 d1 d2 d3 d4 d5 d6 d7 d8 d9 d: d; d< d, d= d, d, d, d, d, d, g Z d> d? d@ dA dB dC dD dE dF dG dH dI dJ dK dL dM dN dO dP dQ g Z dR dS dT dU dV dW dX dY dZ d[ d\ d] d^ d_ d` da db dc dd de df dg dh di dj dk dl dm dn do g Z dp dq l Z dr e f ds „  ƒ  YZ dt e f du „  ƒ  YZ dv e f dw „  ƒ  YZ	 dx e f dy „  ƒ  YZ
 dz e f d{ „  ƒ  YZ dp d| l m Z dp d} l m Z e d~ e d d€ d� e j e ƒ ƒ d‚ d dƒ d ƒ Z e d~ e d„ d€ d… e j e ƒ ƒ d‚ d dƒ d ƒ Z e j d† e d‡ e ƒ Z dq S(ˆ   g        g      à?g      ð?g      ø?g       @g      @g      @g      @g      @g      @g      @g      @g      @g      @g      @g      @g       @g      !@g      "@g      #@g      $@g      %@g      &@g      '@g      (@g      )@g      *@g      +@g      ,@g      -@g      .@i    gçéWOqÉ�?g®#8}—<x?gAŠ­—7“?g¬¿xÚg;³?gÂ»ÀX“»?gcTï³ÅÊÐ?gÑ¡ì"NTÞ?gþOŽš`¼å?góœuÑEí?gî;‚ûî?g`X³;±ï?gºp>zelï?i   g±@…u´yï?g66S�q?g\áâ‹«?gz”yñ'¢?g}˜Æ¹‰ö­?g^ˆyø©è¼?gt–æ	µÐ?g'‚4{’ïã?g¼¦ÆH�ë?gqlÜ«æî?g£RE!lï?gˆ'W“Åï?gV…ü¦FÅï?gºÊÃï?g!Û÷}ßï?g2 CükÄï?g¼ÄÙo”Ýï?g±ðÚ†…¦ð?gŠde�ä?g“d
Ä†×š¿gØ÷/Ö6È¿g¨ÚqêÚÁ¢?gŽgl×vJ½?g*=Í•TÑ—¿g„è‹8°¿g¤F{Ã—?gA³Ì¨U¦?gûgæü…Û’¿g¤ÍªøˆŸ¿gm3rD­H‡?gD<§Ú²í‰?g‡hYÜde‘¿gŠbL–nõ”¿gç—âËðp?gI¨a`öUd?g‚ØÖ¼J3†¿go¿ï‘)ˆ¿g?ö‚èÉ¿gÅ[¨úÖý?gþ©qó¿g×S¾'í?goMñ_íŸî¿gýn\jk§ï?g«]”`l>è¿gÈW»Þ—ß?g¼»/_6dÖ¿gš¥šG€Ð?g€tK_¬¿gÍã3O/Æ¿g•ýêë¾Õ?gkÁF@rnÚ¿gÇ'`ìá?g—·@”øä¿g“ñÈYç?gø&ôA*Öæ¿gêià¶=�æ?gKo‹Çuæ¿g¸²ÝˆÊáä?g²ˆ¹Ù0â¿g#ïWÞ?g¢Á	Í¼Ú¿g^DðBüDÔ?ge9Ìh.ZÎ¿gõ	ÉzÂ?gË{Yõ´»¿g2Á ?¾@¯?gEŸF^Â¦¡¿iÿÿÿÿNt   TFZvsProbabilityCurvec           B   s    e  Z d  Z d „  Z d „  Z RS(   sE   
    Expansion of empirical probability on Chebyshev polynomials
    c         C   s   | |  _  | |  _ | |  _ d  S(   N(   t
   polynomialt   tfz_mint   tfz_max(   t   selfR   R   R   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyt   __init__9   s    		c         C   s[   | |  j  k  r d S|  j  | k rS | |  j k  rS t t |  j j | ƒ d ƒ d ƒ Sd Sd  S(   Ng        g      ð?(   R   R   t   mint   maxR   t   f(   R   t   tfz(    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyt   probability_for@   s
    "(   t   __name__t
   __module__t   __doc__R   R
   (    (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR    4   s   	t   TFZvsProbabilityCurveCollectionc           B   sM   e  Z d  Z d „  Z d „  Z e d „  ƒ Z e d „  ƒ Z e d „  ƒ Z	 RS(   s<   
    Select appropriate scoring curve from a selection 
    c         C   s   | |  _  d  S(   N(   t   condition_curve_pairs(   R   R   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR   Q   s    c         C   s:   x3 |  j  D] \ } } | d | ƒ r
 | Sq
 Wt d ‚ d  S(   Nt   descriptions   No appropriate curve found(   R   t   RuntimeError(   R   R   t	   conditiont   curve(    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyt   probability_curve_forV   s    c         C   s%   |  d |  j  | f |  j | f g ƒ S(   NR   (   t   select_nonpolart   select_polar(   t   clst   polart   nonpolar(    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyt   PolarNonpolar`   s    c         C   s(   d t  |  j ƒ k  p' |  j j ƒ  d k S(   Ni   i    (   t   lent   peakst   space_group_infot*   number_of_continuous_allowed_origin_shifts(   R   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR   j   s    c         C   s(   t  |  j ƒ d k o' d |  j j ƒ  k S(   Ni   (   R   R   R   R   (   R   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR   q   s    (
   R   R   R   R   R   t   classmethodR   t   staticmethodR   R   (    (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR   L   s   		

t"   TFZBasedProbabilityPeakDescriptionc           B   s#   e  Z d  Z d d „ Z d „  Z RS(   sQ   
    Stores data about a peak in structure that is used in TFZ-based scoring
    t	   componentc         C   s   | |  _  | |  _ d  S(   N(   R	   t
   annotation(   R   R	   R#   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR   }   s    	c         C   s   d |  j  |  j f S(   Ns   %s TFZ=%.2f(   R#   R	   (   R   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyt   __str__ƒ   s    (   R   R   R   R   R$   (    (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR!   x   s   t'   TFZBasedProbabilityStructureDescriptionc           B   s   e  Z d  Z d „  Z RS(   sI   
    Stores data about a structure that is used in TFZ-based scoring
    c         C   s   | |  _  | |  _ d  S(   N(   R   R   (   R   R   R   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR   �   s    	(   R   R   R   R   (    (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR%   ˆ   s   t   TFZBasedProbabilityc           B   s/   e  Z d  Z d „  Z e d „  ƒ Z d „  Z RS(   s7   
    Calculates probability scores for a structure
    c         C   sV   | j  d | ƒ |  _ | j |  _ g  |  j D] } |  j j d | j ƒ ^ q+ |  _ d  S(   NR   R	   (   R   R   R   R
   R	   t   individuals(   R   t
   collectionR   t   p(    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR   ˜   s    c         C   s   t  t j |  j d ƒ S(   Ng      ð?(   t   reducet   operatort   mulR'   (   R   (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyt   total¡   s    c         C   sn   g  t  t |  j |  j ƒ d d ƒD]% \ } \ } } d | | | f ^ q" } | j d |  j ƒ d j | ƒ S(   Nt   starti   s   %d. %s => P(i)=%.2fs   P(total)=%.2fs   
(   t	   enumeratet   zipR   R'   t   appendR-   t   join(   R   t   indext   peakt   probt   lines(    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR$   §   s    J(   R   R   R   R   t   propertyR-   R$   (    (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyR&   “   s   		(   t   chebyshev_polynome(   t   flexR   i   iýÿÿÿi   R   R   i   i   R   R   (   t   TFZ_BINSt   TFZ_POLAR_SOLVED_FRACSt   TFZ_NONPOLAR_SOLVED_FRACSt%   TFZ_POLAR_SOLVED_FRAC_CHEBYSHEV_COEFSt(   TFZ_NONPOLAR_SOLVED_FRAC_CHEBYSHEV_COEFSR+   t   objectR    R   R!   R%   R&   t   scitbx.mathR8   t   scitbx.array_familyR9   t   doublet   tfz_polar_singlet   tfz_nonpolarR   t   TFZ_POLAR_NONPOLAR(    (    (    sH   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/phaser/pipeline/evaluation.pyt   <module>   s\   -'!$															, 			