ó
¥™xTc           @   s‚   d  Z  d d l m Z d d l m Z d e f d „  ƒ  YZ d e f d „  ƒ  YZ d e f d	 „  ƒ  YZ d
 e f d „  ƒ  YZ	 d S(   sI   
Base classes for visualization of MolProbity analysis using matplotlib.
iÿÿÿÿ(   t   division(   t   slots_getstate_setstatet   rotarama_plot_mixinc           B   sA   e  Z d  d d  d g Z d „  Z d e d d d d d d „ Z RS(   i    ih  c         C   s\   t  |  d ƒ s t ‚ g  |  _ g  |  _ |  j j d ƒ |  _ |  j j d d d d g ƒ d  S(   Nt   figureio   gš™™™™™¹?g333333ë?(   t   hasattrt   AssertionErrort   _pointst   _xyzR   t   add_subplott   plott   set_position(   t   self(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt   __init__   s
    		t   jetc
      	   C   s"  d d  l  }
 g  |  _ g  |  _ t |
 j | ƒ } |  j j ƒ  | d  k rU |  j } n t	 | ƒ d k sm t
 ‚ | GH|  j j | d d d | d | ƒ| d  k	 rÈ |  j j | | d d d d d | ƒn  |	 d  k rá |  j ƒ  n |  j d	 |	 ƒ |  j j | ƒ | d  k	 r| d  k	 r:t	 | ƒ t	 | ƒ k s:t
 ‚ n  xÔ t | ƒ D]Ã \ } \ } } } } | rè|  j j | f | f d
 d d ƒ| r¬|  j j | | | d d ƒn  |  j j | | f ƒ | d  k	 r
|  j j | | ƒ q
qG|  j j | f | f d
 d d ƒqGWn  |  j j ƒ  d  S(   Niÿÿÿÿi   t   origint   lowert   cmapt   extentt   colorst   kt   y_markst   bot   markerfacecolort   redt   colort   blackt   white(   t   matplotlib.cmR   R   t   getattrt   cmR	   t   cleart   NoneR   t   lenR   t   imshowt   contourt
   set_labelst	   set_titlet	   enumeratet   textt   appendt   canvast   draw(   R   t   statst   titlet   pointst   show_labelst   colormapt   contourst   xyzR   R   t
   matplotlibR   t   it   xt   yt   labelt
   is_outlier(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt	   draw_plot   s@    
		"
 !%")N(   t   __name__t
   __module__R   R   R   t   TrueR7   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyR   	   s   	
t   residue_binc           B   sh   e  Z d  d d g Z d „  Z d „  Z d „  Z d „  Z d „  Z d „  Z d	 „  Z	 d
 „  Z
 d „  Z RS(   t   residuest   markst   labelsc         C   s   g  |  _  g  |  _ g  |  _ d  S(   N(   R<   R=   R>   (   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyR   A   s    		c         C   s{   |  j  j | ƒ t |  j  ƒ } | d d k rw |  j j | ƒ | d  k	 rd |  j j | j ƒ  ƒ qw |  j j d ƒ n  d  S(   Ni
   i    t    (   R<   R'   R    R=   R   R>   t   residue_group_id_str(   R   t   residuet   n_res(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt   add_residueF   s    c         C   s(   x! t  | ƒ D] } |  j d  ƒ q Wd  S(   N(   t   rangeRC   R   (   R   t   nR2   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt	   add_emptyP   s    c         C   s   t  |  j ƒ S(   N(   R    R<   (   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyRB   T   s    c         C   sÈ   d  } } d } xM | t |  j ƒ k  r_ |  j | d  k	 rR |  j | j ƒ  } Pn  | d 7} q Wt |  j ƒ d } xD | d k r¹ |  j | d  k	 r¬ |  j | j ƒ  } Pn  | d 8} qv Wd | | f S(   Ni    i   s   %s - %s(   R   R    R<   R@   (   R   t	   bin_startt   bin_endR2   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt   get_residue_rangeW   s    
c         C   s   t  t |  j ƒ ƒ S(   N(   RD   R    R<   (   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt   x_valuesg   s    c         C   s   |  j  | S(   N(   R<   (   R   t   index(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt   get_selectedj   s    c         C   sr   d d  l  } g  } xJ |  j D]? } | d  k	 rD | j | j ƒ  ƒ q | j | j g d ƒ q W| j | ƒ j ƒ  S(   Niÿÿÿÿi   (   t   numpyR<   R   R'   t   get_real_space_plot_valuest   NaNt   arrayt	   transpose(   R   RM   R4   RA   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyRN   m   s    c         C   sr   d d  l  } g  } xJ |  j D]? } | d  k	 rD | j | j ƒ  ƒ q | j | j g d ƒ q W| j | ƒ j ƒ  S(   Niÿÿÿÿi   (   RM   R<   R   R'   t   get_outlier_plot_valuesRO   RP   RQ   (   R   RM   R4   RA   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyRR   w   s    (   R8   R9   t	   __slots__R   RC   RF   RB   RI   RJ   RL   RN   RR   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyR;   ?   s   		
						
t   residue_binnerc           B   s)   e  Z d  e d „ Z d „  Z d „  Z RS(   id   c         C   s¾  g  |  _  d  } } x¤t | ƒ D]–\ } } t |  j  ƒ d k sZ |  j  d j ƒ  | k rp |  j  j t ƒ  ƒ n  | j } | j ƒ  }	 | d  k	 r–| | k s­ |	 | d k r	| | k r¿ | sÜ |  j  d j ƒ  | d k rò |  j  j t ƒ  ƒ q“|  j  d j	 d ƒ q–|	 | d k r–|  j  d j ƒ  d k r–|	 | d }
 d } xJ | |
 k  r�|  j  d j ƒ  | k  r�|  j  d j	 d ƒ | d 7} qIWq–n  |  j  d j
 | ƒ | } |	 } q  Wd  S(   Ni    iÿÿÿÿi
   i   i   (   t   binsR   R%   R    RB   R'   R;   t   chain_idt   resseq_as_intRF   RC   (   R   t   res_listt   bin_sizet   one_chain_per_bint
   last_chaint   last_resseqR2   RA   t   chaint   resseqt   gap(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyR   ‚   s,    	
.	)(c         C   s   |  j  | S(   N(   RU   (   R   t   i_bin(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt   get_binœ   s    c         C   s    g  |  j  D] } | j ƒ  ^ q
 S(   N(   RU   RI   (   R   t   bin(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt
   get_rangesŸ   s    (   R8   R9   t   FalseR   Ra   Rc   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyRT   �   s   	t   multi_criterion_plot_mixinc           B   s   e  Z d  „  Z d „  Z RS(   c         C   s   | |  _  | |  _ t |  _ d  S(   N(   t   binnert   y_limitsRd   t   disabled(   R   Rf   Rg   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyR   £   s    		c      
   C   s%  |  j  r d  S|  j j ƒ  |  j j | ƒ } | |  _ d } | j ƒ  } | j ƒ  } | j ƒ  \ } } } }	 |  j j | d | ƒ }
 |
 j	 d d d d g ƒ |
 j
 | | d d d d d	 d
 ƒ|
 j
 | | d d d d d	 d ƒ|
 j d ƒ |
 j ƒ  } | j d d |  j d ƒ ƒ| j d d ƒ |  j d \ } } | j | | ƒ | j j |  j ƒ |  j j | d | d d |
 ƒ} | j	 d d d d g ƒ | j
 | | d d d d d	 d ƒ| j ƒ  } | j d d |  j d ƒ d	 d ƒ| j d d ƒ |  j d \ } } | j | | ƒ | j ƒ  d j t ƒ | j ƒ  } | j	 d d d d g ƒ | j
 | | d d d d d	 d ƒ| j ƒ  } | j d d |  j d ƒ d	 d ƒ|  j d \ } } | j | | ƒ | j ƒ  d j t ƒ | j ƒ  } | j d d |  j d ƒ ƒ| j | j ƒ | j | j d |  j d ƒ ƒ| j ƒ  d j t ƒ | j ƒ  } | j
 | | d d d ƒ | j
 | | d d  d! ƒ | j
 | | d d" d# ƒ | j
 | | d d$ d% ƒ |  j j | j  | j  |
 j  d& d' d( d) d* d d+ d, g d- |  j d. ƒ ƒ|  j! j" ƒ  d  S(/   Ni   i   g333333³?g      ä?gffffffê?gÍÌÌÌÌÌÔ?t   -t	   linewidthR   t   gi   R   s   Multi-criterion validationt   Densityt   fontpropertiesR5   iÿÿÿÿie   t   rhot   sharexgš™™™™™á?t   bs   Local real-space CCt   cci    t   rs   B-factort   Residuet   basicg®Gáz®ï?t   og\�Âõ(\ï?t   ^g
×£p=
ï?t   sg¸…ëQ¸î?t   dt   CCt   Ramachandrant   Rotamers   C-betas	   Bad clasht   Fcs   2mFo-DFct   propt   legend(#   Rh   R   R   Rf   Ra   t   _current_binRJ   RN   R   R
   R	   R$   t   get_axest
   set_ylabelt   get_fontt   set_xlimRg   t   set_ylimt   xaxist   set_major_formattert   null_fmtt   get_yticklabelst   set_visibleRd   t   twinxt
   set_xlabelt
   set_xticksR=   t   set_xticklabelsR>   RR   R~   t   linesR(   R)   (   R   R`   Rb   t   n_plotsR3   R4   t   b_isoRq   t   fmodelt   two_fofct   p1t   a1t   rho_mint   rho_maxt   p2t   a2t   cc_mint   cc_maxt   p3t   a3t   b_mint   b_maxt   y2(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt
   plot_range¨   sj    	 	##"###(   R8   R9   R   R    (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyRe   ¢   s   	N(
   t   __doc__t
   __future__R    t   libtbxR   t   objectR   R;   RT   Re   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/graphics.pyt   <module>   s   6B!