ó
¢™xTc           @   sá  d  d l  m Z d  d l Z d  d l Z d  d l Z d  d l m Z e j j	 d d d e j
 j ƒ Z e d „ Z e d ƒ j Z e d	 ƒ j Z e d
 ƒ j Z e d ƒ j Z d e d <d e d <d e f d „  ƒ  YZ d „  Z i  Z x¸ e ƒ  j ƒ  D]§ Z e j d ƒ sqö n  d e d  e f Z e d Ue d k rFd e e <qö e d k r_d e e <qö e d k rxd e e <qö e d k r‘d e e <qö d sö t ‚ qö Wd „  Z e d k rÝe j  d  Z! e j  d  3e e ƒ  ƒ n  d S(!   iÿÿÿÿ(   t   divisionN(   t   Sorryt   relative_paths   chem_data/curated_datasetst   testc         C   s‡   d d  l  } y" | j |  t g ƒ \ } } } Wn t k
 rM d sN t ‚ n X| rk |  GH| GH| GH| GHn  | j |  | | | ƒ } | S(   Niÿÿÿÿi    (   t   impt   find_modulet   curated_repository_dirt	   Exceptiont   AssertionErrort   load_module(   t   namet   verboseR   t   fpt   pathnamet   descriptiont   m(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/datasets.pyt   imp_dataset   s    "t   top8000t   rna11t   hiq54t   iridiums  
The HiQ54 dataset for tests in methods development: small (60-200 residues),
monomeric, non-redundant, high-quality (both resolution and MolProbity score
both >=1.4), with no tightly-bound ligands.

Literature reference: Leaver-Fay et al (2013) Meth Enzymol 523: 109-143.t   infoss   
The Iridium dataset for ligands as curated by Nat Echols to have the original
(as best as possible) search model.
t   dataset_itemc           B   s   e  Z d  „  Z d „  Z RS(   c         C   s5   x. t  | ƒ D]  \ } } t |  | | | ƒ q Wd  S(   N(   t	   enumeratet   setattr(   t   selft   attrst   itemst   it   attr(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/datasets.pyt   __init__+   s    c         C   s;   d } x. |  j  D]# } | d | t |  | ƒ f 7} q W| S(   NR   s   
  %-20s : %s(   t   __dict__t   getattr(   R   t   outlR   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/datasets.pyt   __repr__/   s    !(   t   __name__t
   __module__R   R"   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/datasets.pyR   *   s   	c         c   sQ   |  j  d d ƒ r& |  j  d d ƒ GHn  x$ |  d D] } t |  d | ƒ Vq1 Wd  S(   NR   t    t   datat   headers(   t   getR   (   R&   t   row(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/datasets.pyt   generate_data_items5   s     t   _datas%   generate_%s = generate_data_items(%s)iûÿÿÿt   top8000_datas   Top 8000t
   rna11_datas   RNA 11t
   hiq54_datat   HiQ54t   iridium_datat   Iridiumi    c         C   s¼   t  d  k r t d ƒ ‚ n  d Gt  GHx‘ |  j ƒ  D]ƒ } | j d ƒ sL q1 n  d Gd t | d GHxP t |  j d | d  g  ƒ ƒ D]. \ } } d	 d
 GH| G| GH| d k r‚ Pq‚ q‚ Wq1 Wd  S(   Ns,   chem_data/curated_datasets is not available.s   
Curated Repository DirR+   s   
s   %s i
   s   generate_%siûÿÿÿt   -iP   i    (   R   t   NoneR   t   keyst   endswitht   data_lookupsR   R(   (   t   localt   keyR   t   item(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/datasets.pyt   runH   s    	 -		 t   __main__i   ("   t
   __future__R    t   ost   syst   libtbx.load_envt   libtbxt   libtbx.utilsR   t   envt   find_in_repositoriest   patht   isdirR   t   FalseR   R&   R,   R-   R.   R0   t   objectR   R*   R6   t   localsR4   R8   R5   t   cmdR   R:   R#   t   argvt   args(    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/validation/datasets.pyt   <module>   sH   

	 

    	
