ó
¾™xTc           @   s»   d  d l  m Z d  d l m Z d  d l Z d  d l m Z d  d l Z d  d l	 m
 Z
 d  d l m Z d  d l Z d  d l Z d  d l m Z d „  Z e d	 k r· e ƒ  e ƒ  GHn  d S(
   iÿÿÿÿ(   t   division(   t   monomer_libraryN(   t   pdb_interpretation(   t   approx_equal(   t   format_cpu_times(   t   flexc    	      C   sq  t  j j d d d t j j ƒ }  t j d t j	 j	 ƒ  d t j	 j
 ƒ  d |  ƒ } | j ƒ  } | j d d ƒ } | j d	 | j ƒ  ƒ d
 d d „  ƒ  Y} t j | j ƒ  j ƒ  t ƒ } | j ƒ  j | j ƒ  ƒ x› t t g D]� } t j j d | d | d | d t d
 | ƒ } | j d | j ƒ  d d  d d ƒ } t | j | j ƒ sNt ‚ t | j  | j  ƒ sÜ t ‚ qÜ Wd  S(   Nt   relative_paths(   phenix_regression/pdb/adp_restraints.pdbt   testt   mon_lib_srvt   ener_libt	   file_namet   plain_pairs_radiusg      @t
   sites_cartt
   parametersc           B   s    e  Z d  Z d Z d Z d Z RS(   gš™™™™™ù?g        g�íµ ÷Æ°>(   t   __name__t
   __module__t   sphere_radiust   distance_powert   average_powert	   min_u_sum(    (    (    sQ   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/regression/tst_adp_restraints.pyR      s   t   geometry_restraints_managert   xray_structuret   use_hdt   use_u_local_onlyt	   variablest   type_indicest   type_weightsg      ð?(    (!   t   libtbxt   envt   find_in_repositoriest   ost   patht   isfileR   t   processR   t   serverR	   R   R   t   pair_proxiesR   R   t   boolt
   scattererst   sizet   Truet   flags_set_grad_u_isot
   iselectiont   Falset   cctbxt   adp_restraintst   energies_isot   harmonic_restraintst   extract_u_iso_or_u_equivt   NoneR   t   residual_sumt   AssertionErrort	   gradients(	   t   pdb_file_namet   processed_pdb_fileR   t   grmR   t   selR   t   energies_adpt   u_iso_restraints(    (    sQ   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/regression/tst_adp_restraints.pyt   run   s4    							t   __main__(   t
   __future__R    t   mmtbxR   t   mmtbx.monomer_library.servert   mmtbx.monomer_libraryR   t   cctbx.adp_restraintsR+   t   libtbx.test_utilsR   t   libtbx.utilsR   t   libtbx.load_envR   R   t   cctbx.array_familyR   R:   R   (    (    (    sQ   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/regression/tst_adp_restraints.pyt   <module>   s   	 