ó
xTc           @   s²   d  d l  m Z d  d l m Z d  d l Z d  d l Z d  d l m Z d  d l	 Z
 d  d l m Z d  d l Z d   Z e d k r® e j   Z e   d e j   e GHn  d S(	   i’’’’(   t   division(   t   monomer_libraryN(   t   idealized_aa(   t   flexc       	   C   sž  t  j   }  t |  j    d k s* t  x5 t j j j D]$ } | j	   |  j   k s: t  q: Wt
 j j   } t
 j j   } xwt j j j D]f} | j	   } xQ| | d g D]?} t  j | } t j | j    } t
 j j d | d | d |  } | j   j   } | j d t d d  }	 |	 j d	 |  }
 |
 j   } |
 j   } |
 j   } |
 j   } d
 | Gd | Gd | GH| d d k  st  | d d k  s­t  d
 | Gd | Gd | GH| d d k  sÜt  | d d k  s³ t  q³ Wq Wd  S(   Ni*   t   _ht   mon_lib_srvt   ener_libt   raw_recordst   show_energiest   plain_pairs_radiusg      @t
   sites_carts   %5ss   bonds     : %5.3f %5.3f %5.3fs   angles     : %5.3f %5.3f %5.3fi   g333333ó?g{®Gįzt?s   bonds rmsZ: %5.3f %5.3f %5.3fs   angles rmsZ: %5.3f %5.3f %5.3fgffffffę?(   t   iaat   residue_dictt   lent   keyst   AssertionErrort   iotbxt   pdbt   amino_acid_codest   one_letter_given_three_lettert   lowerR   t   serverR   t   __dict__R   t
   std_stringt
   splitlinest   pdb_interpretationt   processt   xray_structureR
   t   geometry_restraints_managert   Falset   energies_sitest   bond_deviationst   angle_deviationst   bond_deviations_zt   angle_deviations_z(   t   dt   aacR   R   t   aac_t   residue_as_stringt   rst   processed_pdb_fileR
   t   grmt   est   bt   at   b_zt   a_z(    (    sT   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/tst_idealized_aa.pyt   exercise_00
   s@    "						t   __main__s   Time: %6.3f(   t
   __future__R    t   mmtbxR   t   mmtbx.monomer_library.servert(   mmtbx.monomer_library.pdb_interpretationt   mmtbx.monomer_libraryR   R   t   iotbx.pdb.amino_acid_codesR   t   scitbx.array_familyR   t   timeR/   t   __name__t   t0(    (    (    sT   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/tst_idealized_aa.pyt   <module>   s   	$