ó
˜™xTc           @   s°   d  d l  m Z d  d l m Z d  d l Z e j j d ƒ sM d Z	 e
 Z n d  d l Z	 e Z d e f d „  ƒ  YZ e s„ d Z n	 e ƒ  Z d e f d „  ƒ  YZ d	 „  Z d S(
   iÿÿÿÿ(   t   division(   t   geometry_restraintsNt   conformation_dependent_geometryt
   pgd_serverc           B   s   e  Z d  „  Z d „  Z RS(   c         C   s   t  j j t  j j ƒ |  _ d  S(   N(   R   t   anglest   create_all_databasest	   databasest   lib(   t   self(    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyt   __init__   s    	c         C   s:   t  j j d |  j d | d | d | d | ƒ \ } } | S(   Nt   dblistt   residuet   next_residuet   phit   psi(   R   R   t   get_geometryR   (   R   R   R   R   R   t   fieldst   geometry(    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyt   lookup   s    	(   t   __name__t
   __module__R	   R   (    (    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyR      s   	t!   conformation_dependent_restraintsc           B   sY   e  Z d  „  Z d „  Z e e ƒ Z d „  Z e e ƒ Z d „  Z e e ƒ Z d „  Z RS(   c         C   sC   | |  _  | |  _ | |  _ | |  _ | |  _ | |  _ | |  _ d  S(   N(   t   residue_namet   next_residue_namet   conformation_proxiest   i_phi_proxyt   i_psi_proxyt   i_dynamic_anglest   i_dynamic_dihedrals(   R   R   R   R   R   R   R   R   (    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyR	      s    						c         C   s0   | d  k	 r, t j d |  d | | ƒ } | Sd  S(   Nt
   sites_cartt   proxy(   t   NoneR   t   dihedral(   R   t   dihedral_proxiest   i_proxyR    (    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyt   _get_dihedral(   s    	c         C   s0   | d  k	 r, t j d |  d | | ƒ } | Sd  S(   NR   R   (   R   R   t   angle(   R   t   angle_proxiesR"   R$   (    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyt
   _get_angle3   s    	c         C   sN   t  j j d | ƒ } t  j j d | ƒ } t |  | ƒ d t |  | ƒ d f S(   Nt   geometry_namei   i   (   R   R   t#   get_database_attribute_average_namet%   get_database_attribute_deviation_namet   getattr(   R   t
   param_namet   pgd_param_average_namet   pgd_param_deviation_name(    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyt   _get_average_and_weight>   s    		c      	   C   sX  d d l  m } | ƒ  } y( |  j d | d |  j d |  j ƒ } Wn t k
 rZ d  } n Xy( |  j d | d |  j d |  j ƒ } Wn t k
 rœ d  } n X| d  k	 rÈ | d I| j I| j	 IJn  | d  k	 ró | d I| j I| j	 IJn  | d  k	 rT| d  k	 rTt
 j d |  j d	 |  j d | j d | j ƒ } g  |  j D]$ }	 |  j d | d
 | d |	 ƒ ^ qE}
 xÇ t |
 t j j |  j ƒ D]ª \ } } }	 |	 d  k	 r‹|  j | | ƒ \ } } t j d | |	 j d | d | ƒ } | | |	 <| |	 } | |  j I|  j I| | I| j I| j I| j IJq‹q‹Wg  |  j D]$ }	 |  j d | d | d |	 ƒ ^ qC} xä t | t j j |  j ƒ D]Ä \ } } }	 |	 d  k	 r‰|  j | | ƒ \ } } | |	 j } | |	 j } t j d | |	 j d | d | ƒ } | | |	 <| |	 } | |  j I|  j I| | I| j I| j I| j IJq‰q‰Wn  d  S(   Niÿÿÿÿ(   t   null_outR   R!   R"   R   R   R   R   R%   t   i_seqst   angle_idealt   weight(   t   libtbx.utilsR/   R#   R   R   t	   ExceptionR   R   t   angle_modelt   deltat   pgd_libR   R   R   R   R&   t   zipR   R   t   angle_namesR.   R   t   angle_proxyR0   R1   R2   R   t   dihedral_namest   dihedral_proxy(   R   R   R!   R%   R/   t   logR   R   R   R"   R   R$   t
   angle_namet   new_angle_idealt
   new_weightt   new_angle_proxyR   t	   dihedralsR    t   dihedral_namet   new_dihedral_proxy(    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyt   update_restraintsK   sx    			
		
				1			

,1			

(   R   R   R	   R#   t   staticmethodR&   R.   RE   (    (    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyR      s   							c         C   sE  t  | ƒ d k s t ‚ | d d k r1 d } n | d j } | d d k rW d } n | d j } g  } t j ƒ  }	 xÊt t j j	 ƒ D]¶\ }
 } g  } xR | D]J \ } } | | } | d k	 r¢ | j
 t | j j | ƒ d d ƒ ƒ q¢ q¢ Wt  | ƒ d k rù| j d ƒ d k rù|
 d k rnt j d | d d	 d
 d d d d ƒ } |	 j
 | ƒ | j
 d ƒ d } q?|
 d k rÅt j d | d d d
 d d d d ƒ } |	 j
 | ƒ | j
 d ƒ d } q?|
 d k r?| j | ƒ \ } } | j
 | ƒ q?q‰ |
 d k rd } q‰ |
 d k r#d } q‰ |
 d k r‰ | j
 d ƒ q‰ q‰ Wg  } xÂ t j j D]´ } g  } xR | D]J \ } } | | } | d k	 ri| j
 t | j j | ƒ d d ƒ ƒ qiqiWt  | ƒ d k rý| j d ƒ d k rý|  j | ƒ } | j
 | ƒ qV| j
 d ƒ qVWt d | d | d |	 d | d | d | d | ƒ } | S(   s›   
  Sets up conformation_dependent_restraints object.

  Finds atom indexes from registries

  Looks for C_prev in m_i, most atoms in m_j, N_next in m_k.
  i   i   i   t   i_seqi   i    R0   R1   g      N@R2   g      4@t   periodicityg      d@g      >@R   R   R   R   R   R   R   Ng      y@g      Œ@(   t   lent   AssertionErrorR   R   R   t   shared_dihedral_proxyt	   enumerateR   R   t   dihedral_atomst   appendR*   t   expected_atomst   gett   countR<   t   lookup_i_proxyt   angle_atomsR   (   t   angle_proxy_registryt   dihedral_proxy_registryt   monomer_mappingst   connectivity_i_jt   connectivity_j_kR   R   R   t   dihedral_i_proxiesR   t   dihedral_numbert   dihedral_definitionR0   t   residue_indext	   atom_namet   mmR   R   R   R   t   dihedral_i_proxyt   dihedral_signt   angle_i_proxiest   angle_definitiont   angle_i_proxyt   cfd(    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyt*   build_conformation_dependent_angle_proxies¹   s‚    		
,'	
			
				
,'	(   t
   __future__R    t   cctbxR   t   libtbx.load_envt   libtbxt   envt
   has_moduleR   R   t   Falset   is_availablet&   conformation_dependent_geometry.anglest   Truet   objectR   R7   R   Re   (    (    (    se   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/monomer_library/conformation_dependent_restraints.pyt   <module>   s   			›