ó
É™xTc           @   s3   d  d l  m Z d „  Z e d k r/ e ƒ  n  d S(   iÿÿÿÿ(   t   divisionc             s¾  d d l  m }  d d  l } d d  l } d d l m } xd d d d d d	 d
 d d d d g D]ð } |  j | ƒ } t | j ƒ d k s� t	 ‚ | j
 d  k	 s¥ t	 ‚ x¨ | j D]� } | j j j ƒ  } | | _ | | _ d t | j
 ƒ | _
 | j j j ƒ  } | | _ | | _ d j |  j | ƒ ƒ | _
 |  j | | ƒ d% k s¯ t	 ‚ q¯ Wq` Wx. | j ƒ  D]  } |  j | ƒ |  j | ƒ qaWd d l m } d d l m }	 | j j ƒ  }
 g  t | j ƒ D]B } | j d ƒ rÄt t | j | ƒ t ƒ rÄt | j | ƒ ^ qÄ} i d d 6d d 6d d 6d d 6d d 6} x0| D](} x| D]} |	 | |
 ƒ } | d  k rpqIn  xí | j  ƒ  j! ƒ  D]Ù } |  j" d | d | j# ƒ \ } } d d l$ m% ‰  d  ˆ  f ‡  f d! †  ƒ  Y} | d | j# d | d" d# ƒ } |  j | ƒ |  j | ƒ } } | | k r8| | | k s8t	 ‚ n  | | k sJt	 ‚ | | k sƒt	 ‚ qƒWqIWq<WxJ | j j& D]< } |  j | ƒ d k s–t	 ‚ |  j | ƒ d k sut	 ‚ quWd$ GHd  S(&   Niÿÿÿÿ(   t   server(   t   chemical_elementst   NAt   MGt   Kt   CAt   MNt   FEt   NIt   COt   CUt   ZNt   CDi    t   +s   {:+}(   t   monomer_library(   t   mon_lib_queryt   common_residue_namest   Hi   t   Ciýÿÿÿt   Niþÿÿÿt   Ot   St   resnamet   element(   t
   group_argst   GAtomc              s)   e  Z ‡  f d  †  Z d „  Z d „  Z RS(   c            s   ˆ  d |  j  ƒ S(   NR   (   R   (   t   self(   R   (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/ions/tst_parameters.pyt   fetch_labels9   s    c         S   s   d j  |  j |  j ƒ S(   Ns   gatom="{} {}"(   t   formatR   R   (   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/ions/tst_parameters.pyt   id_str;   s    c         S   s   t  |  j ƒ S(   N(   t   intt   charge(   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/ions/tst_parameters.pyt   charge_as_int=   s    (   t   __name__t
   __module__R   R   R!   (    (   R   (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/ions/tst_parameters.pyR   8   s   	R    t   0t   OK(   NN('   t
   mmtbx.ionsR   t   iotbx.pdb.hierarchyt	   iotbx.pdbt   cctbx.eltbxR   t   get_metal_parameterst   lent   allowed_coordinating_atomst   AssertionErrorR    t   Nonet   pdbt	   hierarchyt   atomt   nameR   t   strR   t
   get_charget   get_valence_paramst   proper_upper_listt   get_elementt   mmtbxR   t   mmtbx.rotamer.rotamer_evalR   t   dirt
   startswitht
   isinstancet   getattrt   listt	   atom_dictt   valuest   _get_charge_paramst   type_symbolt   libtbxR   t   common_residue_names_water(   t   st   iotbxR   t   elemt   paramst   elem2t   atom1t   atom2R   R   t   mon_lib_srvt   it   common_residuest   common_atomst   commont   resnt   mlqR1   R    R   t   gatomt   get_charge_valt   get_elem_val(    (   R   sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/ions/tst_parameters.pyt   exercise   sp    .				&3
		t   __main__N(   t
   __future__R    RV   R"   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/ions/tst_parameters.pyt   <module>   s   	M