ó
±™xTc           @   s³   d  d l  m Z d  d l m Z m Z d  d l m Z d  d l Z d  d l Z d Z	 d e
 f d „  ƒ  YZ d e f d	 „  ƒ  YZ e j d
 „ Z e d k r¯ e e j d ƒ n  d S(   iÿÿÿÿ(   t   division(   t   Sorryt   Usage(   t   slots_getstate_setstateNs´   
mtz_file = None
  .type = path
f_obs_label = F-obs-filtered
  .type = str
f_calc_label = F-model
  .type = str
r_free_label = R-free-flags
  .type = str
n_bins = 10
  .type = int
t   r_factor_shellc           B   s/   e  Z d  d d d g Z d „  Z d d „ Z RS(   t   d_mint   d_maxt   r_workt   r_freec         C   s(   | |  _  | |  _ | |  _ | |  _ d  S(   N(   R   R   R   R   (   t   selfR   R   R   R   (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/show_r_factors_by_shell.pyt   __init__   s    			s     c         C   s-   | d | |  j  |  j |  j |  j f IJd  S(   Ns   %s%6.3f - %6.3f  %6.4f  %6.4f(   R   R   R   R   (   R	   t   outt   prefix(    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/show_r_factors_by_shell.pyt   show   s    (   t   __name__t
   __module__t	   __slots__R
   R   (    (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/show_r_factors_by_shell.pyR      s   	t   r_factor_shellsc           B   s2   e  Z d  d g Z d d „ Z e j d d „ Z RS(   t   shellst   overalli
   c         C   s!  d  | | | g k s t ‚ | j ƒ  j ƒ  | j ƒ  j ƒ  k sE t ‚ | j d | ƒ } | j d | ƒ g  |  _ d  |  _ x| j ƒ  j	 ƒ  D]ñ } | j ƒ  j
 | ƒ } | j | ƒ } | j | ƒ } | j | ƒ }	 | j |	 j ƒ  ƒ }
 | j |	 j ƒ  ƒ } | j |	 j ƒ  ƒ } | j |	 j ƒ  ƒ } t d |
 j ƒ  d |
 j ƒ  d d |
 j | ƒ d | j | ƒ ƒ } |  j j | ƒ qŒ W| j | j ƒ  ƒ }
 | j | j ƒ  ƒ } | j | j ƒ  ƒ } | j | j ƒ  ƒ } t d | j ƒ  d | j ƒ  d d |
 j | ƒ d | j | ƒ ƒ |  _ d  S(   Nt   othert   n_binsR   R   i    R   R   (   t   Nonet   AssertionErrort   datat   sizet
   common_sett   setup_binnerR   R   t   binnert
   range_usedt	   selectiont   selectR   R   t	   d_max_mint	   r1_factort   append(   R	   t   f_obst   f_calct   r_free_flagsR   t   bint   sele_bint	   f_obs_bint
   f_calc_bint   r_free_flags_bint
   f_obs_workt   f_calc_workt
   f_obs_freet   f_calc_freet   shell(    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/show_r_factors_by_shell.pyR
   %   s<    *		s     c         C   se   | d IJx' |  j  D] } | j d | d | ƒ q W| d IJ|  j j d | d | ƒ | d IJd  S(   Nt    R   R   (   R   R   R   (   R	   R   R   R/   (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/show_r_factors_by_shell.pyR   E   s    

(   R   R   R   R
   t   syst   stdoutR   (    (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/show_r_factors_by_shell.pyR   "   s    c      	   C   sã  t  |  ƒ d k s d |  k r1 t d t ƒ ‚ n  d d l m } d d  l } | j j d |  d t d d	 d
 d ƒ } | j j	 ƒ  } | j
 d  k r¡ t d ƒ ‚ n  | j | j
 d d d t ƒ} d  } } }	 xÛ | j j D]Í }
 |
 j ƒ  j } t j d d | d ƒ } | d | j k s*| | j k r3|
 } qÚ | d | j k sU| | j k rdt |
 ƒ } qÚ | d | j k s†| | j k rÚ |
 j d |
 j ƒ  d k ƒ }	 qÚ qÚ Wt d | d | d |	 d | j ƒ } | j d | ƒ | S(   Ni    s   --helpsþ   mmtbx.show_r_factors_by_shell DATA_FILE [OPTIONS]

example:
  mmtbx.show_r_factors_by_shell refine_001.mtz 10

Shows a table of R-factors by resolution shell, starting from the reflections
in a typical phenix.refine output MTZ file.

Full parameters:
%s
iÿÿÿÿ(   t   file_readert   argst   master_phil_stringt   reflection_file_deft   mtz_filet   integer_defR   s   No MTZ file supplied!t
   force_typet   hklt   raise_sorry_if_errorss   \(.*R0   R   i   R#   R$   R%   R   (   t   lenR   t   master_philt   iotbxR3   t
   iotbx.philt   philt   process_command_line_with_filest   workt   extractR7   R   R   t   any_filet   Truet   file_servert   miller_arrayst   infot   labelst   ret   subt   f_obs_labelt   f_calc_labelt   abst   r_free_labelt   customized_copyR   R   R   R   (   R4   R   R3   R>   t   cmdlinet   paramst   mtz_inR$   R#   R%   t   arrayRI   t   first_label_non_anomR   (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/show_r_factors_by_shell.pyt   runM   sH    
			%t   __main__i   (   t
   __future__R    t   libtbx.utilsR   R   t   libtbxR   RJ   R1   R=   t   objectR   R   R2   RV   R   t   argv(    (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/show_r_factors_by_shell.pyt   <module>   s   +/