ó
±™xTc           @   sõ  d  d l  m Z d  d l Z d  d l m Z d  d l m Z d  d l m Z d  d l m	 Z	 m
 Z
 d  d l m Z m Z d  d l m Z d  d	 l m Z d  d l Z d  d l Z d  d l Z e j j d
 d e ƒZ e Z d e f d „  ƒ  YZ d e f d „  ƒ  YZ d d „ Z d e f d „  ƒ  YZ d e d „ Z d „  Z d e j  f d „  ƒ  YZ! y d  d l" Z" Wn e# k
 r…d „  Z$ nL Xd  d l% m& Z& d „  Z$ d e& j' f d „  ƒ  YZ( d e& j) f d „  ƒ  YZ* e+ d k rñe e j, d ƒ n  d S(    iÿÿÿÿ(   t   divisionN(   t   easy_pickle(   t   easy_mp(   t   make_header(   t   Sorryt   Usage(   t   adopt_init_argst   Auto(   t   runtime_utils(   t   StringIOsö  
model = None
  .type = path
  .style = file_type:pdb bold input_file
cif_file = None
  .type = path
  .multiple = True
  .short_caption = Restraints
  .style = file_type:cif bold input_file
map_coeffs = None
  .type = path
  .short_caption = Map coefficients
  .style = file_type:hkl bold input_file OnChange:extract_ringer_map_labels
map_label = 2FOFCWT,PH2FOFCWT
  .type = str
  .input_size = 200
  .short_caption = 2Fo-FC map labels
  .style = bold renderer:draw_map_arrays_widget noauto
difference_map_label = FOFCWT,PHFOFCWT
  .type = str
  .input_size = 200
  .short_caption = Fo-Fc map labels
  .style = bold renderer:draw_map_arrays_widget noauto
map_file = None
  .type = path
sampling_method = linear *spline direct
  .type = choice(multi=False)
sampling_angle = 5
  .type = int
  .input_size = 80
grid_spacing = 1./5
  .type = float
scaling = *sigma volume
  .type = choice(multi=False)
skip_alt_confs = True
  .type = bool
  .short_caption = Skip existing alternate conformations
nproc = 1
  .type = int
  .short_caption = Processors
  .style = renderer:draw_nproc_widget
gui = False
  .type = bool
  .style = hidden
output_base = None
  .type = str
output_dir = None
  .type = path
  .style = output_dir
include scope libtbx.phil.interface.tracking_params
t   process_includest
   ringer_chic           B   s)   e  Z d  „  Z e d „ Z d d „ Z RS(   c         C   s0   t  |  t ƒ  ƒ | d k  r, d | |  _ n  d  S(   Ni    ih  (   R   t   localst   angle_current(   t   selft   idR   t	   densitiest   fofc_densitiest   sampling(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt   __init__N   s    c         C   sx   g  |  j  D] } d | ^ q
 } | rX |  j d  k	 rX g  |  j D] } d | ^ q? } n  d |  j |  j d j | ƒ f S(   Ns   %.3fs   chi%d,%.1f,%st   ,(   R   R   t   NoneR   R   t   join(   R   t   fofct   xR   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt
   format_csvS   s     #i    c         C   s
   g  } d  S(   N(    (   R   t	   thresholdt   peaks(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt
   find_peaksY   s    (   t   __name__t
   __module__R   t   FalseR   R   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR   M   s   	t   ringer_residuec           B   s5   e  Z d  „  Z d „  Z d „  Z d „  Z d „  Z RS(   c         C   s   t  |  t ƒ  ƒ i  |  _ d  S(   N(   R   R   t   _angles(   R   t   resnamet   chain_idt   residt   altloct   n_chit   xyz(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR   ^   s    c         C   sM   |  j  d k r) d |  j |  j |  j f Sd |  j |  j |  j |  j  f Sd  S(   Nt    s   %s%2s%ss   %s%2s%s (conformer %s)(   R%   R"   R#   R$   (   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt   formatb   s    c         C   sð   |  j  d k r. d |  j |  j |  j f } n" d |  j |  j |  j |  j  f } g  } xŠ t d |  j d ƒ D]r } |  j | ƒ } | d  k	 rm | j | d | j	 ƒ  ƒ | j
 d  k	 rß | j | d | j	 d t ƒ ƒ qß qm qm Wd j | ƒ S(	   NR(   s   %s%2s%s,s   %s%2s%s %s,i   s	   2mFo-DFc,s   mFo-DFc,R   s   
(   R%   R"   R#   R$   t   rangeR&   t	   get_angleR   t   appendR   R   t   TrueR   (   R   t   prefixt   linest   it   chi(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR   i   s    +c         K   s    t  | �  } | |  j | j <d  S(   N(   R   R!   R   (   R   t   kwdsR1   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt	   add_anglex   s    c         C   s   |  j  j | d  ƒ S(   N(   R!   t   getR   (   R   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR+   |   s    (   R   R   R   R)   R   R3   R+   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR    ]   s
   				c	         C   sE  d  }	 | d  k r3 | d  k	 s$ t ‚ | j ƒ  } n  | j ƒ  }	 | j d k s` | d  k	 s` t ‚ d d l m }
 d d l m } | d | d d | d d	 | d
 d | d t	 ƒ } d } g  } g  } xr| d k  r:| d | d d | d d	 | d | j
 d t	 ƒ } | j d | ƒ } d  } } | j d k rn| d  k	 rn| j | ƒ } | d  k	 r| j | ƒ } qn“ | j d k s‰| d  k ræ| d  k r¶|
 j d | d |	 d | ƒ } q| j | ƒ } | d  k	 r| j | ƒ } qn | j d | d | ƒ j } | j | ƒ | d  k	 r*| j | ƒ n  | | j
 7} qÉ W| | f S(   Nt   directiÿÿÿÿ(   t   maptbx(   t   rotate_point_around_axist   axis_point_1i   t   axis_point_2i   t   pointi   t   anglet   degi    ih  t	   site_cartt   splinet   lineart   mapt   gridding_matrixt	   site_fract   sigma(   R   t   AssertionErrort	   unit_cellt   fractionalization_matrixt   sampling_methodt   cctbxR6   t   scitbx.matrixR7   R-   t   sampling_anglet   fractionalizet   tricubic_interpolationt.   non_crystallographic_eight_point_interpolationt   eight_point_interpolationt   direct_summation_at_pointt   realR,   (   t   i_seqst
   sites_cartt
   map_coeffst   real_mapt   difference_mapRC   t   angle_startt   paramsRE   t   frac_matrixR6   R7   R:   t	   n_degreesR   t   difference_densitiest
   point_fract   rhot   rho_fofst   rho_fofc(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt   sample_angle   s^    
!


	

		
		t   iterate_over_residuesc           B   s,   e  Z d d d d d d  „ Z e d „ Z RS(   c      	   C   s[  | d  k r t j } n  t |  t ƒ  ƒ | j ƒ  } t | ƒ d k rU t d ƒ ‚ n  d  |  _ |  _	 |  _
 | d  k	 rR| j ƒ  |  _ | j d k rÌ |  j j ƒ  |  _ | j ƒ  sÌ |  j j ƒ  |  _ qÌ n  | j d k sê | j d k rR|  j j d | j ƒ }	 | j d k r3|	 j ƒ  j ƒ  |  _ |	 j ƒ  n
 |	 j ƒ  |	 j ƒ  |  _	 qRn | d  k	 sdt ‚ |  j d IJ| j d |  j d d	 ƒ | j j ƒ  |  _	 d |  _ d
 d l m }
 | j ƒ  } | j ƒ  d | j  d } | j ƒ  d | j  d } | j ƒ  d | j  d } | j ƒ  d d !\ } } } |
 j | | | | | | f ƒ |  _ | d  k	 r| j d k r£|  j! j ƒ  |  _! | j ƒ  s£|  j! j ƒ  |  _! q£n  | j d k sÁ| j d k r|  j! j d | j ƒ }	 | j d k rõ|	 j ƒ  n
 |	 j ƒ  |	 j ƒ  |  _
 qn  g  } d
 d l" m# } | j$ t% ƒ |  _& | j' ƒ  j( ƒ  |  _) g  |  _* x. | d j+ ƒ  D] } |  j* j, | j* ƒ  ƒ qkW| j- d  t. g k s¯| j- d k rt/ j0 d | j- d |  j1 d t2 t |  j* ƒ ƒ ƒ } g  |  _3 xi | D] } |  j3 j, | ƒ qòWnH g  |  _3 x< t2 t |  j* ƒ ƒ D]% } |  j3 j, |  j1 | d t4 ƒƒ q.Wd  S(   Ni   s$   Multi-model PDB files not supported.R5   RC   t   resolution_factors   CCP4 map statistics:t   outR.   s     iÿÿÿÿ(   t   uctbxi    i   i   i   (   t   sidechain_anglest	   processest
   fixed_funct   argst   verbose(5   R   t   syst   stdoutR   R   t   modelst   lenR   RC   RT   RU   RE   RG   RS   t   expand_to_p1t   anomalous_flagt   generate_bijvoet_matest   scalingt   fft_mapt   grid_spacingt
   statisticst   apply_sigma_scalingt   apply_volume_scalingt   real_map_unpaddedRD   t   logt   show_summaryt   datat	   as_doubleRH   Rc   t
   parameterst   unit_cell_gridt   difference_map_coeffst   mmtbx.rotamerRd   t   SidechainAnglesR   t   angle_lookupt   atomst   extract_xyzRR   t   residue_groupst   chainst   extendt   nprocR   R   t   pool_mapt   sample_densityR*   t   resultsR-   (   R   t   pdb_hierarchyRW   RS   R}   t   ccp4_mapRE   Rw   Rk   Rq   Rc   t   at   bt   ct   alphat   betat   gammaR‰   Rd   t   chaint   results_t   result_listt   i_res(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR   ¾   s|     
	$
	$				 	c         C   s=  d d  l  } | j j } |  j | } | j ƒ  } g  } xÿt | j ƒ  ƒ D]ë\ } }	 | d k rt |  j j rt qJ n  |	 j ƒ  }
 | |
 j	 ƒ d k rJ t
 |  j j j |
 j	 j ƒ  d ƒ ƒ } | d k rÎ qJ n  d  } x6 |
 j ƒ  D]( } | j j ƒ  d k rá | j } Pqá qá Wt d |
 j	 d | j ƒ  j d |
 j ƒ  d |	 j d	 | d
 | ƒ } | ro|  j d |
 j ƒ  IJn  x³t d | d ƒ D]ž} y |  j j d | |
 ƒ } Wn t k
 r¹qƒX| d  k rÊPn  g  | D] } | j ^ qÑ} g  | D] } |  j | ^ qí} d d l  m! } | d | d d d d ƒ } | rT|  j d | | j" f IJn  t# d | d | d |  j$ d |  j% d |  j& d |  j' d | j" d |  j( d |  j ƒ 	\ } } t) | ƒ d k rÉd  } n t) | ƒ t) | ƒ k sçt* ‚ | rðn  | j+ d | d | j" d | d | d  |  j j, ƒ qƒW| j- | ƒ qJ qJ W| S(!   Niÿÿÿÿi    t   common_amino_acidt   CAR"   R#   R$   R%   R&   R'   s     %s:i   s   chi%d(   t   dihedralt   sitest   angle_idealt   weights       chi%d = %.1fRQ   RR   RS   RT   RU   RE   RV   RC   RW   R   R   R   R   R   (.   t	   iotbx.pdbt   pdbt   common_residue_names_get_classRƒ   t
   conformerst	   enumerateRW   t   skip_alt_confst   only_residueR"   t   intR€   t	   chisPerAAR4   t   lowerR   R�   t   namet   stripR'   R    t   parentR   R$   R%   Rw   t   id_strR*   t   extract_chi_atomst   AttributeErrort   i_seqRR   t   cctbx.geometry_restraintsR˜   t   angle_modelR_   RS   RT   RU   RE   RC   Rl   RD   R3   RJ   R,   (   R   R•   Rh   t   iotbxt	   get_classt   residue_groupRŸ   R‰   t   i_conft	   conformert   residueR&   R'   t   atomt   res_outR0   R�   RQ   R¬   t	   sites_chiR˜   R1   R   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyRˆ     s„    ' 				 								 		N(   R   R   R   R   R   Rˆ   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR`   ½   s   Kc         C   sã  t  j  ƒ  } | d  k r$ t j } n  t |  ƒ d k r† t ƒ  } t j d | d d ƒ t d d d d d	 d
 d | j	 ƒ  ƒ ‚ n  d d l
 m } d d  l } | j j d |  d t d d d d d d d d ƒ } | j j ƒ  | j j ƒ  } t | ƒ | j | j d d ƒ}	 |	 j d ƒ |	 j j }
 |
 j ƒ  j ƒ  d  } } } | j d  k	 r<| j | j d d ƒ} | j d ƒ d  } g  } g  } x | j j D]ò } | j ƒ  r�| j ƒ  j ƒ  } | | j k rÙ| } q�| | j  k rñ| } q�| j d  k rS| j! | ƒ | j" d ƒ s:| j" d ƒ s:| j" d ƒ rS| } | j! | ƒ qSn  | j  d  k r�| j" d ƒ s€| j" d ƒ rŒ| } qŒq�q�q�W| d  k rjt | ƒ d k rÀt# d  ƒ ‚ n^ | d  k rìt# d! d" d# j$ | ƒ ƒ ‚ n2 t | ƒ d$ k rt# d% d" d& j$ | ƒ ƒ ‚ n  | } | d' | d IJqjn. | j | j% d d( ƒ} | j d( ƒ | j } t& d) d | ƒt  j  ƒ  } t' d* |
 d | d+ | d( | d, | d- | ƒ j( } t  j  ƒ  } | rï| d. | | IJ| d/ | | IJn  | j) d  k r3t* j+ j, | j ƒ } t* j+ j- | ƒ d d0 | _) n  t. j/ d1 | j) | ƒ | d2 | j) IJd3 j$ g  | D] } | j0 ƒ  ^ qhƒ } t1 d4 | j) d5 ƒ j2 | ƒ | d6 | j) IJ| d7 IJ| d8 IJ| j3 rÛt4 | ƒ n | Sd  S(9   Ni    Rb   R.   s       s9   ringer.py [model.pdb] [map.mtz] [cif_file ...] [options]
s     Reference:
sB       Lang PT, Ng HL, Fraser JS, Corn JE, Echols N, Sales M, Holton
s>       JM, Alber T.  Automated electron-density sampling reveals
sE       widespread conformational polymorphism in proteins. Protein Sci.
s2       2010 Jul;19(7):1420-31. PubMed PMID: 20499387
s     Full parameters:
%siÿÿÿÿ(   t   file_readerRg   t   master_philt   pdb_file_deft   modelt   reflection_file_defRS   t   map_file_deft   map_filet   cif_file_deft   cif_filet
   force_typeR�   t   hklt   2FOFCWTt   2mFoDFct   FWTt   FOFCWTt   DELFWTs7   No valid (pre-weighted) map coefficients found in file.s9   Couldn't automatically determine appropriate map labels. s   Choices:
  %ss     
i   s5   Multiple appropriate map coefficients found in file. s   
  s(     Guessing %s for input map coefficientsR‹   s   Iterating over residuesRŠ   R}   RW   Rw   s   Time excluding I/O: %8.1fss   Overall runtime:    %8.1fst   _ringers   %s.pkls   Wrote %s.pkls   
s   %s.csvt   ws   Wrote %s.csvs   
Reference:sí     Lang PT, Ng HL, Fraser JS, Corn JE, Echols N, Sales M, Holton JM, Alber T.
  Automated electron-density sampling reveals widespread conformational
  polymorphism in proteins. Protein Sci. 2010 Jul;19(7):1420-31. PubMed PMID:
  20499387(5   t   timeR   Ri   Rj   Rl   R	   R¹   t   showR   t   getvalueR¯   R¸   t
   iotbx.philt   philt   process_command_line_with_filest   workt   extractt   validate_paramst   any_fileR»   t   check_file_typet   file_objectt	   hierarchyR�   t   reset_i_seqRS   t   file_servert   miller_arrayst   is_complex_arrayt   infot   label_stringt	   map_labelt   difference_map_labelR,   t
   startswithR   R   R¾   R   R`   R‰   t   output_baset   ost   patht   basenamet   splitextR   t   dumpR   t   opent   writet   guit   run_app(   Rg   Rb   Rh   t   t0t   phil_outR¸   R¯   t   cmdlineRW   t   pdb_inRÖ   RS   R‹   R}   t   mtz_int
   best_guesst   best_labelst
   all_labelst   arrayt   labelst   ccp4_map_int   t1R‰   t   t2t   pdb_baset   rt   csv(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt   runU  s²     		
			 (
	c         C   s¯   |  j  d  k r t d ƒ ‚ n  |  j d  k rK |  j d  k rK t d ƒ ‚ n  d |  j k  oe d k  n s} t d d ƒ ‚ n  d |  j k  o— d k  n s« t d	 ƒ ‚ n  t S(
   Ns'   No PDB file supplied (parameter: model)s4   No map coefficients supplied (parameter: map_coeffs)i   i<   s7   The sampling angle must be an integer between 1 and 60 t   degreesi    g      à?s<   The grid spacing must be greater than zero but less than 0.5(   R»   R   R   RS   R¾   RJ   Rr   R-   (   RW   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyRÒ   ¹  s    t   launcherc           B   s   e  Z d  „  Z RS(   c         C   s?   t  j |  j ƒ t  j |  j ƒ t d t |  j ƒ d t j ƒ S(   NRg   Rb   (	   Rá   t   makedirst
   output_dirt   chdirRú   t   listRg   Ri   Rj   (   R   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyRú   Æ  s    (   R   R   Rú   (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyRü   Å  s   c         C   s   t  d ƒ ‚ d  S(   Ns   wxPython not available.(   R   (   R‰   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyRé   Ï  s    (   t   plotsc         C   sF   t  j d ƒ } t d  d d ƒ } | j |  ƒ | j ƒ  | j ƒ  d  S(   Ni    iÿÿÿÿs   Ringer results(   t   wxt   Appt   RingerFrameR   t   show_resultst   Showt   MainLoop(   R‰   t   appt   frame(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyRé   Ô  s
    
R  c           B   s>   e  Z d  „  Z d „  Z d „  Z d „  Z d „  Z d „  Z RS(   c         C   s/   t  |  d d ƒ} | j j t j |  j ƒ | S(   Nt   figure_sizei   i   (   i   i   (   t
   RingerPlott   canvast   BindR  t   EVT_CHARt   OnChar(   R   t   plot(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt   create_plot_panelÜ  s    c         C   s'  t  j |  d t  j ƒ|  _ t  j t  j ƒ } |  j j | ƒ t  j t  j ƒ } | j | ƒ t  j	 |  j d d ƒ } | j | d t  j
 t  j Bd ƒ t  j |  j d d d ƒ|  _ | j |  j d t  j
 t  j Bd ƒ |  j t  j |  j |  j ƒ |  j t  j |  j ƒ |  j j t  j |  j ƒ |  j S(	   Nt   styleiÿÿÿÿs   Residue to display:i    i   t   sizeiÈ   (   iÈ   iÿÿÿÿ(   R  t   Panelt   SUNKEN_BORDERt	   top_panelt   BoxSizert   VERTICALt   SetSizert
   HORIZONTALt   Addt
   StaticTextt   ALLt   ALIGN_CENTER_VERTICALt   Choicet   chooserR  t
   EVT_CHOICEt   OnSelectR  R  (   R   t	   panel_szrt   szr2t   txt1(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt   draw_top_panelá  s     #c         C   sA   | j  ƒ  j ƒ  } |  j j |  j | ƒ |  j |  j | ƒ d  S(   N(   t   GetEventObjectt   GetSelectiont
   plot_panelt   show_residueR‰   t   selection_callback(   R   t   eventt	   selection(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR"  ð  s    c         C   s   d  S(   N(    (   R   R´   (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR+  ö  s    c         C   sc   | |  _  g  | D] } | j ƒ  ^ q } |  j j | ƒ |  j j d ƒ |  j j |  j  d ƒ d  S(   Ni    (   R‰   R)   R   t   SetItemst   SetSelectionR)  R*  (   R   R‰   t   resultt   choices(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR  ù  s
    	c         C   s  | j  ƒ  } t |  j ƒ d k r% d  S|  j j ƒ  } | t j t j t j g k r™ | t |  j ƒ d k  rx | d 7} qÝ t |  j ƒ d k rÝ d } qÝ nD | t j	 t j
 g k rÝ | d k rÊ | d 8} qÝ t t ƒ d } n  |  j j | ƒ |  j j |  j | ƒ d  S(   Ni    i   (   t
   GetKeyCodeRl   R‰   R   R(  R  t   WXK_TABt
   WXK_RETURNt	   WXK_SPACEt
   WXK_DELETEt   WXK_BACKR/  R)  R*  (   R   R,  t   keyR-  (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR     s     (   R   R   R  R&  R"  R+  R  R  (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR  Û  s   					R  c           B   s   e  Z d  „  Z RS(   c   
   
   C   s¢  |  j  r d  S|  j j ƒ  g  } xt d | j d ƒ D]ó} | j | ƒ } | d  k r^ q7 n  t | ƒ d k r• |  j j d d | d | d ƒ} n+ |  j j d d | ƒ } | j	 | j
 ƒ  ƒ | j d d d | d d d g ƒ g  t t | j ƒ ƒ D] } | | j ^ qû } | j | | j d	 d
 d ƒ| j d  k	 rj| j | | j d d d d d d g ƒn  | j | j d d d
 d d d ƒ| j d d d d d d
 d ƒ| j d d d d d d ƒ| j d d d d d d ƒ| j d d ƒ | j ƒ  } | j d ƒ | j d | ƒ | j | ƒ q7 Wx< | d  D]0 } x' | j ƒ  j ƒ  D] }	 |	 j t ƒ qRWq9W|  j j ƒ  |  j j ƒ  |  j ƒ  |  j  j! ƒ  d  S(   Ni   i    i   t   sharexg333333Ã?g333333ç?gÍÌÌÌÌÌÌ?gš™™™™™é?s   r-t	   linewidtht	   linestyles   --t   colorg      à?g        g      ð?R�   i   gš™™™™™Ù?g333333Ó?t	   facecolort   greenR�   iÿÿÿÿt   greyih  t   Rhos   Chi%d(   gš™™™™™Ù?gš™™™™™Ù?gš™™™™™Ù?("   t   disabledt   figuret   clearR*   R&   R+   R   Rl   t   add_subplott	   set_titleR)   t   set_positionR   R   R  R   t   axvlineR   t   axhlinet   axhspant   set_xlimt   get_axest
   set_ylabelt
   set_xlabelR,   t   get_xticklabelst   set_visibleR   R  t   drawt   Fitt   LayoutR¨   t   Refresh(
   R   R´   t   subplotsR0   R1   t   pt   kR   t   axt   label(    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR*    sB    	  %%/+"
(   R   R   R*  (    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyR    s   t   __main__i   (-   t
   __future__R    t   libtbx.philt   libtbxR   R   t   libtbx.str_utilsR   t   libtbx.utilsR   R   R   R   R   t	   cStringIOR	   RÊ   Rá   Ri   RÎ   t   parseR-   R¹   t   master_paramst   objectR   R    R   R_   R`   Rú   RÒ   t   target_with_save_resultRü   R  t   ImportErrorRé   t   wxtbxR  t
   plot_frameR  t   plot_containerR  R   t   argv(    (    (    sG   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/ringer.pyt   <module>   s>   	2+5˜d		6#