ó
±™xTc           @   s§   d  d l  m Z d  d l m Z d  d l m Z d  d l Z d  d l Z d e j f d „  ƒ  YZ	 d e j
 f d „  ƒ  YZ
 d	 „  Z e d
 k r£ e e j d ƒ n  d S(   iÿÿÿÿ(   t   division(   t	   wx_viewer(   t   libtbx_option_parserNt   viewerc           B   s   e  Z d  d „ Z RS(   gÍÌÌÌÌÌô?c         C   s\  | j  } | j ƒ  | j d d d d ƒ } xC t | j j ƒ  ƒ D], \ } } x | j ƒ  D] } | | _ qZ WqA W| j ƒ  |  _	 | j
 j r;d } | j j ƒ  d k }	 xj | j j ƒ  D]Y }
 |	 rÙ |
 j j ƒ  d } n  x4 t |
 j ƒ  ƒ D]  } |  j j | t | ƒ ƒ qì Wq· Wt |  j ƒ |  j	 j ƒ  k sŸt ‚ nd t ƒ  } xX | D]P } | j } | | k r‚| j | ƒ | j ƒ  } n	 | j } |  j j | ƒ qKWd d l m } | d	 |  j	 d
 | j ƒ  ƒ } xÕ t | ƒ D]Ç \ } } x¸ | D]° } | | k  rí| | f } g  | D] } | | ^ q\ } } | j | ƒ r�|  j  j | ƒ | j | j k r„| j d d k r{d } qŠd } n d } | |  j! | <q�qíqíWqÚW~ d d l" m# } m$ } | |  j	 d d ƒ} | d | j% ƒ  d | j& ƒ  | ƒ |  _# t' |  _( t' |  _) | j
 j* } | d k p7t |  j	 ƒ | k |  _+ d  |  _- d  |  _. d  |  _/ d  S(   Nt   first_valuei    t	   incrementt    i   t   :iÿÿÿÿ(   t   build_simple_two_way_bond_setst
   sites_cartt   elementsi   (   t   minimum_covering_spheret	   sphere_3dt   epsilong{®Gáz„?t   centert   radius(   i    i    i   (   i    i   i    (   i   i    i    (0   t	   pdb_atomst(   set_chemical_element_simple_if_necessaryt	   reset_tmpt	   enumeratet   pdb_hierarchyt   residue_groupst   atomst   tmpt   extract_xyzt   pointst   cot   serial_labelst   models_sizet   modelst   idt   stript   xranget
   atoms_sizet   labelst   appendt   strt   lent   sizet   AssertionErrort   sett   addt   id_strt   namet)   cctbx.crystal.distance_based_connectivityR   t   extract_elementt   is_in_same_conformer_ast   line_i_seqst   line_colorst   scitbx.mathR   R   R   R   t   Falset!   flag_show_minimum_covering_spheret   flag_show_rotation_centert   labels_thresholdt   flag_show_labelst   Nonet   labels_display_listt   lines_display_listt   points_display_list(   t   Ot   appt"   minimum_covering_sphere_view_scaleR   t   atom_tmp_sentinelt   it   rgt   atomt   mt   need_mt   mdlt   rg_donet   lR   t	   bond_setst   bond_sett   jt   linet   _t   ait   ajt   colorR   R   t   mcs(    (    sP   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/pdb_view_ad_hoc.pyt   set_points_and_lines   sl    	
" "'				#				$		(   t   __name__t
   __module__RP   (    (    (    sP   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/pdb_view_ad_hoc.pyR   
   s   t   Appc           B   s   e  Z d  „  Z d „  Z RS(   c   	      C   s(  d d  l  } t d d | j j ƒ j d  d d d d d d	 d  d
 d d d ƒj d  d d d d d d	 d d
 d d d ƒj d  d d d d	 t ƒj d | d d ƒ } | j |  _	 | j
 d } d d  l } | j j d | ƒ |  _ |  j j ƒ  |  _ |  j j ƒ  |  _ | GHd G|  j j ƒ  GHd G|  j j ƒ  GH|  j	 j d  k	 r|  j	 j j ƒ  } d d l m } d | | ƒ GHx’ |  j j ƒ  D]h } | j j ƒ  | k r€| j j j ƒ  |  _ |  j j | ƒ |  j j ƒ  |  _ d G|  j j ƒ  GHPq€q€Wt d | | ƒ ƒ ‚ n  t t  |  ƒ j! d | j j ƒ d  S(    Niÿÿÿÿt   usages   %s [options] pdb_files
   --model_idt   actiont   storet   typeR$   t   defaultt   helps   only show model with given idt   metavart   STRs   --labels_thresholdt   inti   s:   do not show atom labels if more than given number of atomst   INTs   --serial_labelst
   store_truet   argst   nargsi   i    t	   file_names     number of models:s     number of atoms:(   t   show_strings   Selecting model with id %ss%   --model-id=%s is not in the pdb file.t   title("   t   libtbx.load_envR   t   envt   dispatcher_namet   optionR7   R2   t   processt   optionsR   R_   t	   iotbx.pdbt   pdbt   inputt   pdb_inpt   construct_hierarchyR   R   R   R   R&   t   model_idR   t   libtbx.str_utilsRb   R   R   t	   hierarchyt   roott   append_modelt   RuntimeErrort   superRS   t   __init__(	   R;   R_   t   libtbxt   command_lineRa   t   iotbxt   midRb   RD   (    (    sP   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/pdb_view_ad_hoc.pyRv   M   sT    					c         C   sz   t  j t  j ƒ } t |  j d d ƒ|  _ |  j j |  ƒ | j |  j t  j t  j ƒ |  j j	 | ƒ | j
 |  j ƒ d  S(   NR&   iX  (   iX  iX  (   t   wxt   BoxSizert   VERTICALR   t   framet   view_objectsRP   t   Addt   EXPANDt   SetSizert   SetSizeHints(   R;   t   box(    (    sP   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/pdb_view_ad_hoc.pyt   init_view_objectsz   s    (   RQ   RR   Rv   R…   (    (    (    sP   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/pdb_view_ad_hoc.pyRS   K   s   	-c         C   s   t  |  ƒ j ƒ  d  S(   N(   RS   t   MainLoop(   R_   (    (    sP   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/pdb_view_ad_hoc.pyt   run‚   s    t   __main__i   (   t
   __future__R    t   gltbxR   t   libtbx.option_parserR   R{   t   syst   show_points_and_lines_mixinR   RS   R‡   RQ   t   argv(    (    (    sP   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/pdb_view_ad_hoc.pyt   <module>   s   A7	