ó
ąxTc           @   s   d  d l  m Z d  d l m Z m Z d  d l m Z d  d l Z d  d l	 Z	 d   Z
 e	 j d  Z e d k r e e	 j d  n  d S(	   i˙˙˙˙(   t   division(   t   make_headert   make_sub_header(   t   easy_pickleNc          C   s)   d d l  m }  |  d t d t d d  S(   Ni˙˙˙˙(   t    generate_master_phil_with_inputst   enable_stop_for_unknownst    enable_pdb_interpretation_paramst   phil_stringsr   
ignore_inconsistent_occupancy = True
  .type = bool
pickle = False
  .type = bool
verbose = False
  .type = bool
(   t   mmtbx.command_lineR   t   Falset   True(   R   (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/analyze_static_disorder.pyt   master_phil	   s
    c         C   sŐ  d d l  m } d d  l } d d  l } | j j d |  d t   d t d t d t d d	 d
 |  } | j	 } | j
 } | j j j d | d | j d | j d | j d | j d d  d t d t d t  	} g  } t d d
 | | j rö | d IJn  | j d | d | d | j d |  }	 t d d
 | | j d
 |  t d d
 | |	 j d k ri| d IJn |	 j d
 | d | j  | j rŃt j j t j j | j j  j! d  d  d }
 t" j# |
 |	  n  |	 S(   Ni˙˙˙˙(   t   analyze_modelt   argsR   t   require_datat   create_fmodelt   process_pdb_filet   usage_strings'   mmtbx.analyze_static_disorder model.pdbt   outt   pdb_hierarchyt   xray_structuret   fmodelt   crystal_symmetryt   geometry_restraints_managert   header_infot   keep_hydrogenst   outliers_onlyt   nuclears   Analyzing models*   Discontinuous occupancies will be ignored.t
   validationt   ignore_inconsistent_occupancyt   logs   MolProbity validations   Disorder analysisi    s!   No alternate conformations found.t   verboses   .pkl($   t   mmtbx.disorderR   t   mmtbx.validation.molprobityR   t   command_linet   load_model_and_dataR   R	   R
   R   t   paramsR   t
   molprobityR   R   R   t   geometryt   NoneR   R   t   process_pdb_hierarchyR   t   show_summaryt   n_disorderedt   showR   t   picklet   ost   patht   basenamet   splitextt   inputt   pdbt	   file_nameR   t   dump(   R   R   R   t   mmtbxt   cmdlinet	   hierarchyR$   R   t   segmentst   processR3   (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/analyze_static_disorder.pyt   run   sV    															*t   __main__i   (   t
   __future__R    t   libtbx.str_utilsR   R   t   libtbxR   t   os.pathR-   t   sysR   t   stdoutR:   t   __name__t   argv(    (    (    sX   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/mmtbx/command_line/analyze_static_disorder.pyt   <module>   s   	.