ó
�™xTc           @   s@   d  Z  d d l m Z d d l m Z d e f d „  ƒ  YZ d S(   s6   http://cms.mpi.univie.ac.at/vasp/vasp/POSCAR_file.htmliÿÿÿÿ(   t   division(   t   slots_getstate_setstatet   readerc           B   sM   e  Z d  j ƒ  Z d d „ Z d „  Z d d „ Z d d „ Z d d „ Z	 RS(	   sO   
    title
    scale
    lattice_vectors
    types
    type_counts
    sites
  c         C   så  t  | ƒ d k s t ‚ | d |  _ | d j ƒ  } t  | ƒ d k sM t ‚ t | d ƒ |  _ g  |  _ xn d d d g D]] } | | j ƒ  } t  | ƒ d k s§ t ‚ g  | D] } t | ƒ ^ q® } |  j j | ƒ qy Wd } | | j ƒ  }	 t  |	 ƒ d k st ‚ |	 d } y t | ƒ WnQ t	 k
 rs|	 |  _
 d } | | j ƒ  }	 t  |	 ƒ t  |  j
 ƒ k s}t ‚ n
 Xd  |  _
 g  |	 D] } t | ƒ ^ q„|  _ | | d j ƒ  }
 |
 d	 k r(d
 d l m } | d  k	 rþd
 d l m } d | | ƒ } n d } | d |
 | d d | f ƒ ‚ n  t |  j ƒ } t  | ƒ | d | k sWt ‚ g  |  _ x~ t | d | d | ƒ D]a } | | j ƒ  } t  | ƒ d k sªt ‚ g  | d  D] } t | ƒ ^ qµ} |  j j | ƒ q|Wd  S(   Ni   i    i   i   i   i   i   i   t   Directiÿÿÿÿ(   t   Sorry(   t   show_strings    of %st    s)   POSCAR "%s" is not supported (line %d%s).(   t   lent   AssertionErrort   titlet   splitt   floatt   scalet   lattice_vectorst   appendt   intt
   ValueErrort   typest   Nonet   type_countst   stript   libtbx.utilsR   t   libtbx.str_utilsR   t   sumt   sitest   xrange(   t   Ot   linest   source_infot	   scale_strt   it   vec_strt   _t   vect   i_type_countst   type_counts_strt   keyR   R   t   st   n_sitest   site_strt   site(    (    s:   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/poscar.pyt   __init__   sR    	
	%	" 	"#c         C   s¼   d d l  m } g  |  j D] } | j | ƒ ^ q } g  | D] } | j ƒ  ^ q< } xH t d ƒ D]: } | j | | d d j | | d d d t ƒƒ qa Wd d l	 m
 } | j | ƒ S(   Niÿÿÿÿ(   t   matrixi   i   i   t   deg(   t   uctbx(   t   scitbxR*   R   t   colt   lengthR   R   t   anglet   Truet   cctbxR,   t	   unit_cell(   R   R*   R    t   vecst   paramsR   R,   (    (    s:   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/poscar.pyR3   >   s    %8t   Sic         C   s/   |  j  d  k r+ | g t |  j ƒ |  _  n  |  S(   N(   R   R   R   R   (   R   t   default(    (    s:   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/poscar.pyt   make_up_types_if_necessaryG   s    i    c   	      C   s÷   |  j  d  k	 s t ‚ d d l m } d d l m } | j ƒ  } t |  j	 ƒ } x t
 |  j  |  j ƒ D]h \ } } xY t | ƒ D]K } | j | j d d | t | ƒ d f d | d | j ƒ  d	 | ƒ ƒ q Wqf Wt | ƒ t |  j	 ƒ k só t ‚ | S(
   Niÿÿÿÿ(   t   xray(   t   flext   labels   %s%di   t   scattering_typeR(   t   u(   R   R   R   R2   R9   t   cctbx.array_familyR:   t   xray_scatterert   iterR   t   zipR   R   R   t	   scattererR   t   next(	   R   t   u_isoR9   R:   t   resultR   t   typet   countR    (    (    s:   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/poscar.pyt
   scatterersL   s    "!c         C   sZ   d d l  m } d d l  m } | j d | j d |  j ƒ  d d ƒ d |  j d	 | ƒ ƒ S(
   Niÿÿÿÿ(   R9   (   t   crystalt   crystal_symmetryR3   t   space_group_symbolt   P1RH   RD   (   R2   R9   RI   t	   structuret   symmetryR3   RH   (   R   RD   R9   RI   (    (    s:   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/poscar.pyt   xray_structure\   s    		N(
   t   __name__t
   __module__R
   t	   __slots__R   R)   R3   R8   RH   RO   (    (    (    s:   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/poscar.pyR      s   	-		N(   t   __doc__t
   __future__R    t   libtbxR   R   (    (    (    s:   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/poscar.pyt   <module>   s   