ó
‹™xTc           @   s  d  d l  m Z d e f d „  ƒ  YZ d „  Z d e f d „  ƒ  YZ d e f d „  ƒ  YZ d	 e f d
 „  ƒ  YZ d e f d „  ƒ  YZ	 d e f d „  ƒ  YZ
 d e f d „  ƒ  YZ d e f d „  ƒ  YZ d e f d „  ƒ  YZ d e f d „  ƒ  YZ d e f d „  ƒ  YZ d S(   iÿÿÿÿ(   t   divisiont   FormatErrorc           B   s   e  Z RS(    (   t   __name__t
   __module__(    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR      s    c         C   s   |  d d k r |  d S|  S(   Ni    t    i   (    (   t   id(    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyt   chain_id_strip   s     t   _basec           B   s   e  Z d  „  Z d „  Z RS(   c         C   s:   t  | ƒ d k  r- | d d t  | ƒ 7} n  | |  _ d  S(   NiP   R   (   t   lent   pdb_str(   t   selfR	   (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyt   __init__
   s     c         C   s   t  d | |  j f ƒ ‚ d  S(   Ns
   %s:
  "%s"(   R   R	   (   R
   t   msg(    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyt   raise_FormatError   s    (   R   R   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR      s   	t   headerc           B   s   e  Z d  „  Z RS(   c         C   sM   t  j |  | ƒ |  j d d !|  _ |  j d d !|  _ |  j d d !|  _ d  S(   Ni
   i2   i;   i>   iB   (   R   R   R	   t   classificationt   depdatet   idcode(   R
   R	   (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR      s    (   R   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR      s   t   expdtac           B   s   e  Z d  „  Z RS(   c         C   s‹   t  j |  | ƒ |  j d d !|  _ |  j d d !|  _ |  j j ƒ  } g  |  _ x6 d D]. } | j | ƒ d k rU |  j j | ƒ qU qU Wd  S(   Ni   i
   iF   s   ELECTRON DIFFRACTIONs   FIBER DIFFRACTIONs   FLUORESCENCE TRANSFERs   NEUTRON DIFFRACTIONt   NMRs   THEORETICAL MODELs   X-RAY DIFFRACTIONi    (   s   ELECTRON DIFFRACTIONs   FIBER DIFFRACTIONs   FLUORESCENCE TRANSFERs   NEUTRON DIFFRACTIONR   s   THEORETICAL MODELs   X-RAY DIFFRACTION(	   R   R   R	   t   continuationt	   techniquet   uppert   keywordst   findt   append(   R
   R	   t   TECHt   keyword(    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR   !   s    	     
(   R   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR      s   t
   remark_002c           B   s   e  Z d  „  Z RS(   c         C   s²   t  j |  | ƒ |  j d d !|  _ |  j d d !j ƒ  } d  |  _ t | ƒ d k r® | d j ƒ  d k r® | d j ƒ  d k r® y t	 | d	 ƒ |  _ Wq® t
 k
 rª q® Xn  d  S(
   Ni   iF   i&   i   i    s   RESOLUTION.i   s
   ANGSTROMS.i   (   R   R   R	   t   textt   splitt   Nonet
   resolutionR   R   t   floatt
   ValueError(   R
   R	   t   flds(    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR   9   s    	  (   R   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR   7   s   t   cryst1c           B   s   e  Z d  „  Z RS(   c         C   sl  t  j |  | ƒ |  j } | d d !| d d !| d d !| d d !| d d !| d d !g |  _ | d d	 !j ƒ  |  _ | d	 d
 !} t d j |  j ƒ j ƒ  ƒ d k r± d  |  _ nJ y) g  |  j D] } t	 | ƒ ^ q¾ |  _ Wn t
 k
 rú |  j d ƒ n Xt |  j ƒ d k rd  |  _ n  | j ƒ  r_y t | ƒ |  _ Wqht
 k
 r[|  j d ƒ qhXn	 d  |  _ d  S(   Ni   i   i   i!   i(   i/   i6   i7   iB   iF   R   i    s   Corrupt unit cell parameterss   Corrupt Z value(   R   R   R	   t   ucparamst   stript   sgroupR   t   joinR   R!   R"   R   t   intt   z(   R
   R	   t   psR*   t   u(    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR   F   s(    		'$ )   (   R   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR$   D   s   t   scalenc           B   s   e  Z d  „  Z RS(   c         C   sà   t  j |  | ƒ t |  j d ƒ |  _ g  } x� d d d d g D]{ } |  j | | d !} t | j ƒ  ƒ d k rz d } n3 y t | ƒ } Wn  t k
 r¬ |  j	 d ƒ ‚ n X| j
 | ƒ q? W| \ |  _ |  _ |  _ |  _ d  S(   Ni   i
   i   i   i-   i    s   Invalid floating-point value(   R   R   R)   R	   t   nR   R&   R!   R"   R   R   t   sn1t   sn2t   sn3t   un(   R
   R	   t   valuest   it   fldt   value(    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR   c   s    	 (   R   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR-   a   s   t   conectc           B   s   e  Z d  „  Z RS(   c         C   sõ   t  j |  | ƒ |  j d d !|  _ g  } g  } g  } xž d | f d | f d | f d | f d | f d | f d | f d	 | f d
 | f d | f g
 D]< \ } } |  j | | d !} | d k r– | j | ƒ q– q– W| |  _ | |  _ | |  _ d  S(   Ni   i   i   i   i   i   i$   i)   i.   i3   i8   i   s        (   R   R   R	   t   serialR   t   serial_numbers_bonded_atomst$   serial_numbers_hydrogen_bonded_atomst!   serial_numbers_salt_bridged_atoms(   R
   R	   t   bat   hbat   sbaR4   t   lR5   (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR   y   s    '+ 		(   R   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR7   w   s   t   linkc           B   s   e  Z d  „  Z RS(   c         C   sk  t  j |  | ƒ |  j d d !|  _ |  j d |  _ |  j d d !|  _ t |  j d d !ƒ |  _ |  j d d !|  _ |  j d |  _	 y t
 |  j d d !ƒ |  _ Wn t k
 r» d  |  _ n X|  j d	 d
 !|  _ |  j d
 |  _ |  j d d !|  _ t |  j d d !ƒ |  _ |  j d d !|  _ |  j d |  _ |  j d d !|  _ |  j d d !|  _ |  j d d !|  _ d  S(   Ni   i   i   i   i   i   i   i(   i*   i.   i/   i2   i4   i8   i;   iA   iB   iH   iP   (   R   R   R	   t   name1t   altloc1t   resname1R   t	   chain_id1t   resseq1t   icode1R!   t   distanceR"   R   t   name2t   altloc2t   resname2t	   chain_id2t   resseq2t   icode2t   sym1t   sym2t   margin(   R
   R	   (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR   •   s(      (   R   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR@   “   s   t   sltbrgc           B   s   e  Z RS(    (   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyRQ   ¹   s    t   ssbondc           B   s   e  Z d  „  Z RS(   c         C   sþ   t  j |  | ƒ |  j d d !|  _ |  j d d !|  _ t |  j d d !ƒ |  _ |  j d d !|  _ |  j d |  _ |  j d d	 !|  _	 t |  j d	 d
 !ƒ |  _
 |  j d d !|  _ |  j d |  _ |  j d d !|  _ |  j d d !|  _ |  j d d !|  _ d  S(   Ni   i
   i   i   i   i   i   i   i   i   i   i#   i;   iA   iB   iH   iP   (   R   R   R	   t   sernumRC   R   RD   RE   RF   RJ   RK   RL   RM   RN   RO   RP   (   R
   R	   (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyR   ½   s    (   R   R   R   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyRR   »   s   N(   t
   __future__R    t   RuntimeErrorR   R   t   objectR   R   R   R   R$   R-   R7   R@   RQ   RR   (    (    (    s?   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/iotbx/pdb/records.pyt   <module>   s   		&